rna8677, rna8677 (mRNA) Nannochloropsis gaditana

Overview
Namerna8677
Unique Namerna8677
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length641
Alignment locationKK037249.1:569967..571187 +

Link to JBrowse

Properties
Property NameValue
Productretinoblastoma binding protein 9
Orig transcript idgnl|cribi|Naga_100881g3.2309.mrna
Orig protein idgnl|cribi|Naga_100881g3.2309
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:569967..571187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100881g3gene8410Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8677rna8677-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22025.1cds8648Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8677 ID=rna8677|Name=rna8677|organism=Nannochloropsis gaditana|type=mRNA|length=641bp
TTCCTCCCCTTCCCCCCCGCATCCCGTGCCTGCGTCCCTCCTTTCCCCCC
GTGCCACCGCCCCCCTCTCACCAGCGCCCCTCCTACCCTAGAGGCTCGCC
CTGCCCGAGACCCACTTCCTGCTCGACTACGTCCGGCCCGACATGCTCCT
CCTCCGCGTCCTCGCACGCGCGCTCGTGCTCTGGGACAGCGTGGAGGCGA
CGCCCGCCTGGATCGAGGGGCAGGTGCCCGCCTTCCTGGCCACGGCCTTC
GCGAGGCTGGGGAAAGAGGGAGCCCGGGGGGGGGAGGAGGGCGGGGAGGC
AGTGGACTGGCAGAGCATCCGGCAGGGCCACGCCTTCATCCTGGCCGGGG
CCTGTCTGGCCCTGGGGCTCCGTTTTGCCTCCACGGCCGACAAAGGGGCG
GCTCAGAGCGTGCGTGGCGTTCTCCTCCACTTCCGCCGCATGCGGGAGAC
TTATCCGGGCGGGAAGGGAGGGCGGGAGGGAGGGCGAGACCCGGTGGCCC
GCGCCCAGCGGCCGGAGAGGCCCGTCCTAGAGATGTGCCTGGGGACAGCG
GCCGTGGCCCTGGGCCTGGTTATGGCGGGCTCGGGAGACCTGGCCTCCTT
TAAGCTGCTGCGGGCGCTCAGGTGGAGGGCGGACCCAGAGG
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protein sequence of rna8677

>rna8677-protein ID=rna8677-protein|Name=rna8677|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MSRKSTLLPFYIVLLIARRLLAFSSAPKMALSTRRLVIVPGNGGGEVTRA
NWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTV
VIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRW
TEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPT
FPRLREALRAQLLADGTASPAHVETSA
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mRNA from alignment at KK037249.1:569967..571187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8677 ID=rna8677|Name=rna8677|organism=Nannochloropsis gaditana|type=mRNA|length=1221bp|location=Sequence derived from alignment at KK037249.1:569967..571187+ (Nannochloropsis gaditana)
ATATGATCGCGCTGGACACACCCCGCCCGTCAGCAGGCCTGGATTCGAAT
GCGCTCTTCGTTCAAATGAAAAACAGTCCTCCCTCATGCATGTTCGAACC
TGGATGCGTGCATTTCGCTTTGTTGCTTGAGTGGGAGTGCCCTCACCCAG
CAttctaacctcctccccttctcccgggGAACCGTTCAAGCCCACAACGA
CACTGCCGTCTCAACAAATCTCAAGGCTGGCTTGGTCTTGATGTCCAGAA
AATCCACCTTATTACCATTTTATATTGTGCTTCTTATTGCTCGACGCTTG
CTGGCTTTCTCCTCTGCGCCCAAGATGGCATTATCCACACGACGGCTGGT
CATTGTCCCcgggaacgggggaggggaggtgactCGCGCCAACTGGTATG
GCTGGGCACAGCGGGCTCTAGCAGACCTGCCTGGGATAGAGGAGGTCCAA
CTGGAGAACATGCCAGACCCCTATACTGCGCGCGAGAGCGTCTGGCTGCC
ATTCATGAAAGATCGCTTGAAATGCGACGCGTCCACGGTTGTCATTGGCC
ACTCGAGTGGTGCGGAGGCCGCCATGCGCTTTGCAGAGTCCCATCGCGTG
GCCGGTTTGGTCTTAGTCTCTGCCTGCGTGACAGACTTGGGCGACGCCAA
CGAGCGAGCTAGTGGGTACTACAATCGACCCTGGCGATGGACGGAAATAA
AGGCCAATGCAGGGTTCGTTCTCCAGTTTGGGAGCGCCGATGACCCCTTC
ATACCGTGGGAAGAGCAGCAAGCTGTGCACGAGGGGATAGGAAGTACGCT
CTTCGCCTACAAGAGCGAGGGGCATTTTATGACTCCGACGTTCCCGCGGC
TCAGGGAGGCCTTACGCGCCCAACTTCTGGCTGACGGAACTGCGAGCCCG
GCCCATGTAGAAACCAGCGCTTAAGAAAGGGATCTGCTCGAAGGGTATCG
ATCCAAGCCGGCGCCTCGTGTCAACCTACGATGGACGCGTCCTGTGATGT
TCAACCGACGGGACATGAAAGAAACTACCATAAAAAGGAAATCTGAAGGC
GTCCAGCGGTCACGTATAGACATTTTCTTTATGTCAAAATCGAATTAAAA
AAGCCCACTTCTTCTCAAATTTAATGCACTATAATACTCTTATCGTCTGC
GCCTCTCTTCGCGATAATTCCGACTCCAAATACACGCCCAGTCAGCTCac
cgccctcgaccccgggccccc
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Coding sequence (CDS) from alignment at KK037249.1:569967..571187+

>rna8677 ID=rna8677|Name=rna8677|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037249.1:569967..571187+ (Nannochloropsis gaditana)
ATGTCCAGAAAATCCACCTTATTACCATTTTATATTGTGCTTCTTATTGC
TCGACGCTTGCTGGCTTTCTCCTCTGCGCCCAAGATGGCATTATCCACAC
GACGGCTGGTCATTGTCCCcgggaacgggggaggggaggtgactCGCGCC
AACTGGTATGGCTGGGCACAGCGGGCTCTAGCAGACCTGCCTGGGATAGA
GGAGGTCCAACTGGAGAACATGCCAGACCCCTATACTGCGCGCGAGAGCG
TCTGGCTGCCATTCATGAAAGATCGCTTGAAATGCGACGCGTCCACGGTT
GTCATTGGCCACTCGAGTGGTGCGGAGGCCGCCATGCGCTTTGCAGAGTC
CCATCGCGTGGCCGGTTTGGTCTTAGTCTCTGCCTGCGTGACAGACTTGG
GCGACGCCAACGAGCGAGCTAGTGGGTACTACAATCGACCCTGGCGATGG
ACGGAAATAAAGGCCAATGCAGGGTTCGTTCTCCAGTTTGGGAGCGCCGA
TGACCCCTTCATACCGTGGGAAGAGCAGCAAGCTGTGCACGAGGGGATAG
GAAGTACGCTCTTCGCCTACAAGAGCGAGGGGCATTTTATGACTCCGACG
TTCCCGCGGCTCAGGGAGGCCTTACGCGCCCAACTTCTGGCTGACGGAAC
TGCGAGCCCGGCCCATGTAGAAACCAGCGCTTAA
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Synonyms
Publications