EWM22025.1, cds8648 (CDS) Nannochloropsis gaditana

Overview
NameEWM22025.1
Unique Namecds8648
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:570207..570890 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22025.1
Productretinoblastoma binding protein 9
Orig transcript idgnl|cribi|Naga_100881g3.2309.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:570207..570890 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR010662Hydrolase_RBBP9/YdeN
IPR029058AB_hydrolase
Homology
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|585102436|gb|EWM22025.1| (retinoblastoma binding protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 468.774 bits (1205), Expect = 2.662e-167
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 MSRKSTLLPFYIVLLIARRLLAFSSAPKMALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLLADGTASPAHVETSA 227
            MSRKSTLLPFYIVLLIARRLLAFSSAPKMALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLLADGTASPAHVETSA
Sbjct:    1 MSRKSTLLPFYIVLLIARRLLAFSSAPKMALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLLADGTASPAHVETSA 227          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|919088378|ref|XP_013381212.1| (PREDICTED: putative hydrolase RBBP9 [Lingula anatina] >gi|919088381|ref|XP_013381213.1| PREDICTED: putative hydrolase RBBP9 [Lingula anatina])

HSP 1 Score: 254.603 bits (649), Expect = 3.500e-83
Identity = 113/175 (64.57%), Postives = 136/175 (77.71%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALR 209
            R+VI+PGNG G+V  ANWYGW    L     I    LENMPDP TARESVW+PFMK+ LKCD ST+++GHSSGA+AAMR+AE ++V G+++VS CVTDLGD NERASGYYNRPW W +I+ANA FVLQFGS DDPFIPWEEQQ VH+G+ S L  Y+ +GH M  TFP L  A++
Sbjct:    4 RVVIIPGNGAGDVYHANWYGWLHNKLNTKENIP-CALENMPDPVTARESVWIPFMKETLKCDESTIIVGHSSGAQAAMRYAEKYKVLGIIVVSGCVTDLGDENERASGYYNRPWEWEKIRANATFVLQFGSTDDPFIPWEEQQQVHQGLQSKLHKYEDKGHCMNSTFPDLLNAVK 177          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|762167269|ref|XP_011421961.1| (PREDICTED: putative hydrolase RBBP9 isoform X2 [Crassostrea gigas])

HSP 1 Score: 254.603 bits (649), Expect = 4.242e-83
Identity = 107/178 (60.11%), Postives = 141/178 (79.21%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQL 212
            ++ I+PGNG G+V  ANWYGWA + +  +  +    L NMPDP TA+ES+W+PFM+++++CD +TV+IGHSSGAEAAMRFAE ++V G++LVSACVTDLGD NERASGYY+RPW WT IKAN  FV+QFGS DDPFIPWEEQQAV +G+ S L  +  +GHFM  +FP+L E ++ ++
Sbjct:   14 KVAIIPGNGAGDVFHANWYGWAHKQINKMENVS-CDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 190          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|762167271|ref|XP_011421963.1| (PREDICTED: putative hydrolase RBBP9 isoform X3 [Crassostrea gigas] >gi|405945175|gb|EKC17187.1| Putative hydrolase RBBP9 [Crassostrea gigas])

HSP 1 Score: 253.832 bits (647), Expect = 5.762e-83
Identity = 107/178 (60.11%), Postives = 141/178 (79.21%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQL 212
            ++ I+PGNG G+V  ANWYGWA + +  +  +    L NMPDP TA+ES+W+PFM+++++CD +TV+IGHSSGAEAAMRFAE ++V G++LVSACVTDLGD NERASGYY+RPW WT IKAN  FV+QFGS DDPFIPWEEQQAV +G+ S L  +  +GHFM  +FP+L E ++ ++
Sbjct:    2 KVAIIPGNGAGDVFHANWYGWAHKQINKMENVS-CDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 178          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|1139854278|ref|XP_011421960.2| (PREDICTED: putative hydrolase RBBP9 isoform X1 [Crassostrea gigas])

HSP 1 Score: 254.218 bits (648), Expect = 9.298e-83
Identity = 107/178 (60.11%), Postives = 141/178 (79.21%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQL 212
            ++ I+PGNG G+V  ANWYGWA + +  +  +    L NMPDP TA+ES+W+PFM+++++CD +TV+IGHSSGAEAAMRFAE ++V G++LVSACVTDLGD NERASGYY+RPW WT IKAN  FV+QFGS DDPFIPWEEQQAV +G+ S L  +  +GHFM  +FP+L E ++ ++
Sbjct:   24 KVAIIPGNGAGDVFHANWYGWAHKQINKMENVS-CDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 200          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|524912460|ref|XP_005111078.1| (PREDICTED: putative hydrolase RBBP9 isoform X1 [Aplysia californica])

HSP 1 Score: 248.825 bits (634), Expect = 3.340e-80
Identity = 123/202 (60.89%), Postives = 144/202 (71.29%), Query Frame = 0
Query:   12 IVLLIARR-LLAFSS----APKMALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREAL 208
            + LL ARR  LA ++     P  + +  R VIVPGNG G+V RANWYGW  R L D  G+E   LENMPDP TARESVWLPFM+  L+CD +TV++GHSSGAEAAMR+AESH+V  +VLVSACVTDLGD NE ASGYYNRPW W  IK N   + QFGS DD FIPW EQQ V EG+ S LF +  +GHFM   FP+L + L
Sbjct:   22 LALLSARRPRLAANTITRVVPMASCNKVRFVIVPGNGAGDVHRANWYGWLFRKLCD-AGME-CCLENMPDPITARESVWLPFMEKELRCDENTVIVGHSSGAEAAMRYAESHKVYSIVLVSACVTDLGDPNEAASGYYNRPWDWESIKGNVKVIAQFGSTDDSFIPWSEQQQVVEGLSSKLFEFSDKGHFMNSQFPQLLKYL 221          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|524912462|ref|XP_005111079.1| (PREDICTED: putative hydrolase RBBP9 isoform X2 [Aplysia californica] >gi|524912464|ref|XP_005111080.1| PREDICTED: putative hydrolase RBBP9 isoform X2 [Aplysia californica] >gi|524912466|ref|XP_005111081.1| PREDICTED: putative hydrolase RBBP9 isoform X2 [Aplysia californica] >gi|871270850|ref|XP_012945027.1| PREDICTED: putative hydrolase RBBP9 isoform X2 [Aplysia californica])

HSP 1 Score: 247.284 bits (630), Expect = 3.649e-80
Identity = 115/174 (66.09%), Postives = 131/174 (75.29%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREAL 208
            R VIVPGNG G+V RANWYGW  R L D  G+E   LENMPDP TARESVWLPFM+  L+CD +TV++GHSSGAEAAMR+AESH+V  +VLVSACVTDLGD NE ASGYYNRPW W  IK N   + QFGS DD FIPW EQQ V EG+ S LF +  +GHFM   FP+L + L
Sbjct:    8 RFVIVPGNGAGDVHRANWYGWLFRKLCD-AGME-CCLENMPDPITARESVWLPFMEKELRCDENTVIVGHSSGAEAAMRYAESHKVYSIVLVSACVTDLGDPNEAASGYYNRPWDWESIKGNVKVIAQFGSTDDSFIPWSEQQQVVEGLSSKLFEFSDKGHFMNSQFPQLLKYL 179          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|1207945330|ref|XP_021362478.1| (putative hydrolase RBBP9 [Mizuhopecten yessoensis] >gi|1207945332|ref|XP_021362479.1| putative hydrolase RBBP9 [Mizuhopecten yessoensis])

HSP 1 Score: 244.973 bits (624), Expect = 2.016e-79
Identity = 104/179 (58.10%), Postives = 133/179 (74.30%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLL 213
            ++ I+PGNG G+V  ANWYGWA   + D+PG+    L NMPDP TARES+W+PFM+  + CD ST++IGHSSGAEAAMRFAE ++V G++LVSAC+TDLGD NER SGYY+RPW W +IKAN  F++QFGS DDPFI WEE Q V +G+ S L  +   GHFM   FP L   ++++L 
Sbjct:    2 KVAIIPGNGAGDVFSANWYGWAYEKINDIPGVT-ADLRNMPDPITARESIWIPFMRGEMSCDESTIIIGHSSGAEAAMRFAEKYKVKGIILVSACITDLGDENERESGYYSRPWEWEKIKANTEFIVQFGSTDDPFIQWEEHQQVADGLQSALHKFSDRGHFMNSVFPELINVVKSKLC 179          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|1205896353|gb|OWF46054.1| (hydrolase RBBP9 [Mizuhopecten yessoensis])

HSP 1 Score: 246.514 bits (628), Expect = 4.792e-79
Identity = 104/179 (58.10%), Postives = 133/179 (74.30%), Query Frame = 0
Query:   35 RLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLL 213
            ++ I+PGNG G+V  ANWYGWA   + D+PG+    L NMPDP TARES+W+PFM+  + CD ST++IGHSSGAEAAMRFAE ++V G++LVSAC+TDLGD NER SGYY+RPW W +IKAN  F++QFGS DDPFI WEE Q V +G+ S L  +   GHFM   FP L   ++++L 
Sbjct:   74 KVAIIPGNGAGDVFSANWYGWAYEKINDIPGVT-ADLRNMPDPITARESIWIPFMRGEMSCDESTIIIGHSSGAEAAMRFAEKYKVKGIILVSACITDLGDENERESGYYSRPWEWEKIKANTEFIVQFGSTDDPFIQWEEHQQVADGLQSALHKFSDRGHFMNSVFPELINVVKSKLC 251          
BLAST of EWM22025.1 vs. NCBI_GenBank
Match: gi|260822459|ref|XP_002606619.1| (hypothetical protein BRAFLDRAFT_277797 [Branchiostoma floridae] >gi|229291963|gb|EEN62629.1| hypothetical protein BRAFLDRAFT_277797 [Branchiostoma floridae])

HSP 1 Score: 242.276 bits (617), Expect = 2.532e-78
Identity = 106/184 (57.61%), Postives = 139/184 (75.54%), Query Frame = 0
Query:   29 MALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQL 212
            MA    R VIVPGNG G+V  +NWY W +  L D+P  +   L+NMPDP  ARE++W+PFM++ L+CD  T+VIGHSSGAEAA+R+AE ++V G+VLVSACVTDLGD NERASGYY+RPW+W ++KAN  +V+QFGS DDPFIPWEEQQ V +G+ + L  + + GHFM+  FP L E ++  +
Sbjct:    1 MAARAERAVIVPGNGAGDVYNSNWYDWVKSNLDDIPNFQ-CTLKNMPDPVMARENIWIPFMREELQCDERTIVIGHSSGAEAAIRYAEQYQVFGIVLVSACVTDLGDENERASGYYSRPWQWDKVKANTRWVVQFGSRDDPFIPWEEQQQVAQGLSTELHKFANRGHFMSYDFPELVEVVKTHV 183          
The following BLAST results are available for this feature:
BLAST of EWM22025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102436|gb|EWM22025.1|2.662e-167100.00retinoblastoma binding protein 9 [Nannochloropsis ... [more]
gi|919088378|ref|XP_013381212.1|3.500e-8364.57PREDICTED: putative hydrolase RBBP9 [Lingula anati... [more]
gi|762167269|ref|XP_011421961.1|4.242e-8360.11PREDICTED: putative hydrolase RBBP9 isoform X2 [Cr... [more]
gi|762167271|ref|XP_011421963.1|5.762e-8360.11PREDICTED: putative hydrolase RBBP9 isoform X3 [Cr... [more]
gi|1139854278|ref|XP_011421960.2|9.298e-8360.11PREDICTED: putative hydrolase RBBP9 isoform X1 [Cr... [more]
gi|524912460|ref|XP_005111078.1|3.340e-8060.89PREDICTED: putative hydrolase RBBP9 isoform X1 [Ap... [more]
gi|524912462|ref|XP_005111079.1|3.649e-8066.09PREDICTED: putative hydrolase RBBP9 isoform X2 [Ap... [more]
gi|1207945330|ref|XP_021362478.1|2.016e-7958.10putative hydrolase RBBP9 [Mizuhopecten yessoensis]... [more]
gi|1205896353|gb|OWF46054.1|4.792e-7958.10hydrolase RBBP9 [Mizuhopecten yessoensis][more]
gi|260822459|ref|XP_002606619.1|2.532e-7857.61hypothetical protein BRAFLDRAFT_277797 [Branchiost... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8677rna8677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications