rna867, rna867 (mRNA) Nannochloropsis gaditana

Overview
Namerna867
Unique Namerna867
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1052
Alignment locationCM002456.1:600514..602257 -

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Properties
Property NameValue
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100017g59.358.mrna
Orig protein idgnl|cribi|Naga_100017g59.358
GeneLhcv3
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:600514..602257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Lhcv3gene830Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna867rna867-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29860.1cds867Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna867 ID=rna867|Name=rna867|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp
AGCGGCTGGGCAACTGAGAACGTAAACTTGTCTCATCCTCCCGCTATATG
ATACAGTTTCCGACTACTGCGGCCACATCTGCTTGTTGGATGTCGATATC
GTGCCCGTTTCCCTTTTATCTGGCCCTTACTGTCGTTGTTTTGACGCTGA
GGTCTAGCTGCGTGGCAGCTTTTTGTTTTCCATCCCGACTGTCGGTTCGC
ACCTCAAAGAGCTATATCCGGAGCCGCCAAAACAGTGTTGTCATGTCTAT
CTCACCGCATATAAAGGGAATATGTTTTGACATGGACGGCACCCTCACTA
ATAGTGATGATTTACACTTTGAAACTTACCGAGATACTCTTTTGAAATTT
GCCCCCGAGTACAATGACGGCCGCCCTCTGGAGCGCGCCTTCTACGACCA
AAAACTCTCTGGGAGCGCGAATGAAATCATTGTCCCCATGCTCCTTCCTC
ACTGGCCCCAAGACCGCATGGAGGAGCTATGGCTTGCCAAGGAAGCATTG
TACCGAGAACGATCGGCAAACATCTCTCCTCTGCCCGGAGTAATTCGCTT
GCTGGACTGGTGCACGGAAAATAAGATCGGATATGTACTCGTCACCAATG
CCCCGCGCGTCGAGTGCCTTCATACCCTCCACTCTTTGAAGCTCAAGGAT
CGATTCCATGACAGTAAAATAATAATTGGACAAGAAATGGCGAGGCCAAA
ACCGTTTCCTGACGCTTACAATGAAGGCTTGCGCCGCTTGGGTCTCGCCG
CAAAGGAGTGCATTGCCTTCGAAGATTCTTTCAGCGGTCTGGCCTCGGCT
GTCGCGGCCGGAATTCCCACCGTTGCGGTGTTGACGAGTCGTTCCGAAGC
AGAGATGATCGACCGAGGAGCATTCATGTCGGTGAAGGATTTTGATGAGC
CGAGTTTGTGGGCTCTCTTAGAGGCCAAGAATTAGTCACTGAAATGATTG
ATTGTGCATCTGAAAGGAATAAAGATCACCGAATCATCATGCATGGCTTC
TCGCGGGGGATGAAATACGCTACAAAGAAAATGACGCTAAGTCGAGTCCC
GC
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protein sequence of rna867

>rna867-protein ID=rna867-protein|Name=rna867|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGT
LVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQ
DPELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQEL
LTGQGPIEQITSGHISPFGDGQGLF
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mRNA from alignment at CM002456.1:600514..602257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna867 ID=rna867|Name=rna867|organism=Nannochloropsis gaditana|type=mRNA|length=1744bp|location=Sequence derived from alignment at CM002456.1:600514..602257- (Nannochloropsis gaditana)
GGTCTTGAACTTAAATCGCAGATCTGTGTTTGCGGAGGGTGGGATTGCTT
GAGGTGCATCCAAACCGCTCTTCTCGCCCGCTTCGCACTCCCTTCGTTGT
CTCTTCTCAACTTTGTCTCAAAAAGACTCTCTCCACTGACTTGCACCCTT
CTATATCTTCATTAGTCTTGTTACTTCCATTTTTTGTCGCCCAAAATGTA
AGACATAGCCATTTTATTGTTGCGCGTTAGCGCTCGTCTTCCTGCTTGCT
GTTGCCGCCTCCGCGTAGGGCAGATCCCATGGCTACCCCCTGGCCCTTAT
TCCTTTATCAAAGCAAGCGATGAATGTCGTGTAAAGTCGATCTGTACATT
TCAAACAGGACATCTTCTTTCCTTCGTAAGCCAACATGAAGTTCCTCGCA
GTCCTTACTGGTGTCCTCGCCACAGCCTCTGCTTTCGTAAGTGCTCGAGA
AGACAGATCGTGCTCTTTTGAGCCTTTAGACTTGTTTCTATTATTTTGTT
CGGTTCGCCCCCTGTCTTGCGCCTGGATTGTTCTAGATTGCTCTGCTACT
ATACTGCATGGTGGTAATCACATGTTGACACTCTCCCGCTCCGCGTCTGG
CTAGGTGCCTCATTTCTCGCTCTCCGCTGGGCGACGAAGCAGCAGCGCTC
TGAGGATGTCGGCATCGGACATGATCGGGATTGACGTCGAGACGGGCGGT
CTGTTCGATCCCCTGGGCTTCTCCAAGGATGAACAATCCCTGTACAAGTA
CCGGCAAGTCGAGCTCAAGCACGGCCGAGTGGCGATGCTCGCCTGCCTGG
GCACCCTGGTGCAGTCCTACACCCACCTCCCCGACGACGTTTTCAGCAAT
CCCCGGCCCCTGGGAGCACTCGGACAGCTCCTGTCCGAGCGTCCCTTGGC
AATCCTCCAGATCGTCATAGCCATCACTTTGATCGAGGTGACGAGCGGGA
AGCAGGACCCCGAGCTGGCGCCCGGTCAGTTGGGACGCTTCGGTGAGGCC
TTCAAGCCCGAGGGCGAGGCCGAAATGGCCGCCGTCCAGCTCAAGGAGCT
TAAAAATGGGCGACTTGCGATGGTAAGACAAGGATGGAGCTTGTTGAGAT
TTAGAATGCTGTGGGAAGGGGTGGGGGAAAGAATTGAATGAGCTGGACCA
TTGCTTACGCGCTCGATGTTTTTTGAAGGTCGCCATCATCGGACAGTGGG
TGCAAGAGCTGTTGACGGGCCAGGGCCCCATTGAGCAGATCACCTCCGGG
CACATCTCCCCCTTCGGCGACGGACAGGGTCTTTTCTGTAAGTGCCAGTT
AAACAACCACCAAGTCCTCATTGGTTGAGAGTGCTTTGAATGTGTAATAA
AATGGTGAGGCTGAAATCATGTCATGGTCTTTTGAAAAATGCATTATAAT
CCCACAGAAGAGGCTGGAAGGGGGAACATGGAGGTGGCGCGCAGGCATTA
GGAAACTACACGTCGCTGGCGGGCAAGCGGAGCACAGGGGTAGAACGGGG
AGGAAAAACGTCGAGACGTCAACCGGAATACCTTTATTTTGCTTGTGATA
CTGGAAGAAGAGGGGCGTTGAGTGTGTCATTGGGCTGGGGATGAAGAGCA
TGGAAAAGAAAACAGATACACAGAACGGGTGTGCAAGAAAAGCGGGACTC
GACTTAGCGTCATTTTCTTTGTAGCGTATTTCATCCCCCGCGAGAAGCCA
TGCATGATGATTCGGTGATCTTTATTCCTTTCAGATGCACAATC
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Coding sequence (CDS) from alignment at CM002456.1:600514..602257-

>rna867 ID=rna867|Name=rna867|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at CM002456.1:600514..602257- (Nannochloropsis gaditana)
AAGTCGCCATCATCGGACAGTGGGTGCAAGAGCTGTTGACGGGCCAGGGC
CCCATTGAGCAGATCACCTCCGGGCACATCTCCCCCTTCGGCGACGGACA
GGGTCTTTTCTATGTCGGCATCGGACATGATCGGGATTGACGTCGAGACG
GGCGGTCTGTTCGATCCCCTGGGCTTCTCCAAGGATGAACAATCCCTGTA
CAAGTACCGGCAAGTCGAGCTCAAGCACGGCCGAGTGGCGATGCTCGCCT
GCCTGGGCACCCTGGTGCAGTCCTACACCCACCTCCCCGACGACGTTTTC
AGCAATCCCCGGCCCCTGGGAGCACTCGGACAGCTCCTGTCCGAGCGTCC
CTTGGCAATCCTCCAGATCGTCATAGCCATCACTTTGATCGAGGTGACGA
GCGGGAAGCAGGACCCCGAGCTGGCGCCCGGTCAGTTGGGACGCTTCGGT
GAGGCCTTCAAGCCCGAGGGCGAGGCCGAAATGGCCGCCGTCCAGCTCAA
GGAGCTTAAAAATGGGCGACTTGCGATGAAGTCGCCATCATCGGACAGTG
GGTGCAAGAGCTGTTGACGGGCCAGGGCCCCATTGAGCAGATCACCTCCG
GGCACATCTCCCCCTTCGGCGACGGACAGGGTCTTTTCTATGTCGGCATC
GGACATGATCGGGATTGACGTCGAGACGGGCGGTCTGTTCGATCCCCTGG
GCTTCTCCAAGGATGAACAATCCCTGTACAAGTACCGGCAAGTCGAGCTC
AAGCACGGCCGAGTGGCGATGCTCGCCTGCCTGGGCACCCTGGTGCAGTC
CTACACCCACCTCCCCGACGACGTTTTCAGCAATCCCCGGCCCCTGGGAG
CACTCGGACAGCTCCTGTCCGAGCGTCCCTTGGCAATCCTCCAGATCGTC
ATAGCCATCACTTTGATCGAGGTGACGAGCGGGAAGCAGGACCCCGAGCT
GGCGCCCGGTCAGTTGGGACGCTTCGGTGAGGCCTTCAAGCCCGAGGGCG
AGGCCGAAATGGCCGCCGTCCAGCTCAAGGAGCTTAAAAATGGGCGACTT
GCGATGAAGTCGCCATCATCGGACAGTGGGTGCAAGAGCTGTTGACGGGC
CAGGGCCCCATTGAGCAGATCACCTCCGGGCACATCTCCCCCTTCGGCGA
CGGACAGGGTCTTTTCTATGTCGGCATCGGACATGATCGGGATTGACGTC
GAGACGGGCGGTCTGTTCGATCCCCTGGGCTTCTCCAAGGATGAACAATC
CCTGTACAAGTACCGGCAAGTCGAGCTCAAGCACGGCCGAGTGGCGATGC
TCGCCTGCCTGGGCACCCTGGTGCAGTCCTACACCCACCTCCCCGACGAC
GTTTTCAGCAATCCCCGGCCCCTGGGAGCACTCGGACAGCTCCTGTCCGA
GCGTCCCTTGGCAATCCTCCAGATCGTCATAGCCATCACTTTGATCGAGG
TGACGAGCGGGAAGCAGGACCCCGAGCTGGCGCCCGGTCAGTTGGGACGC
TTCGGTGAGGCCTTCAAGCCCGAGGGCGAGGCCGAAATGGCCGCCGTCCA
GCTCAAGGAGCTTAAAAATGGGCGACTTGCGATG
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Synonyms
Publications