rna866, rna866 (mRNA) Nannochloropsis gaditana

Overview
Namerna866
Unique Namerna866
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1705
Alignment locationCM002456.1:599445..600616 +

Link to JBrowse

Properties
Property NameValue
Producthad family hydrolase
Orig transcript idgnl|cribi|Naga_100017g58.318.mrna
Orig protein idgnl|cribi|Naga_100017g58.318
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:599445..600616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g58gene829Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna866rna866-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29820.1cds866Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna866 ID=rna866|Name=rna866|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp
CTTCTTTTTGGTTCCTCCCTAGAAAGCAGCATATTGTAAGATACATGTTG
ACCGTATCTTACAGAGCTCGTTGAACCAGGGACATCGGAAAGAATCCTTG
ATGGAGGTCACGAGGACGTACGAGCGTGATTTGGCCAAGTTGCAGCAGGA
GGTTGGGATTCACAATCTGGCCGACAAAAGCCTGGCAAACGCTTTAGATG
AGAGAAACATCTGTTTCAGAAGCCAGTTTATCATCCCTTTGAACGGCTCT
GCAATCTATTTGTGTACTAACAGCTTGGGGCTTCAACCCCGGCGTCTCCG
AGACGACGTCGGGGAGGTCTTAAATAAATGGGGACAAGAGGGTGTGACTT
CTTGGTTTCGAGGGCGCAAGCCTTTCGCCAATGTAGATGAATCAGTTCTT
GATGAATTGGCATCAATAATTGGAGCAAAGGATTCACATGAAGTTGTGGC
CATGAACAGCCTGAGCCTCAACATCCACCTTATGCTTGCTACATTCTACC
GCCCCACCCCAATTCGACGCAAAATAATTGTGGAGGAGAATGCCTTTCCC
TCGGACATCCAGGTGTTGCGGTCCCATCTTGCGCTTGTATATCGGCAAGC
TAACGAAAAAGAACAAGCGCGTGGAAAAAACAAGGGAGATGGCGAACATG
AAGATGAGGACGACTTCCTTCTCATTATCCGACGCCGGCCTGGCGAGTCC
ACTTGGCGGGCATCTGACATTATTACCTTTCTCAAAGATCATGGAAAAGA
TACCGCTCTCCTCTTCCTCAGTGGCTTGCATTTCGCCTCTGGACAATGTT
TTGACATGTCGGGAATCACGGCGGCAGCCCACGCTCAAGGAATCCTGGTT
GGCTTTGACTTGGCCCATGCGATCGGAAACGTTGAGTTACATCTCCATGA
GTGGGGTGTTGATTTCGCATGTTGGTGCCATTACAAGTACATGTGCGCGG
GGCCTGGAGCAGTAGGGGGGGTGTATGTCCACGAGAAACATACAAAGAGA
ACGCCACCTCTGCCGCGCCTGGCTGGGTGGTGGGGGCAAGCCAAAGCCGC
GCGCTTTACGTTCAATGAAGCCATGTTTGAGCCCGCTCCCGGTGCCCTGG
GTTTCCAGCTCTCGACTCCCTCCCCGCTGATGCTCGCATGCTTGGAAAGC
GCCCTCAGACTCTTCAAGGCCGCCGGGGGGATGCCTGCGTTGCGGAAGAA
GTCCGTCCTCCTGACAGGATACCTGCAGCTCTTGCTCGAGCAAACGTTGT
CAGACACAGTGCAGATCATTACGCCAGCGGCGTCCGAAGAAAGGGGGTGC
CAGCTGTCCCTGACGTTCAAGGTGGAGAGGCTGGAGGCTGCACAGGTCCT
GGAGGCGCTTGAGGCCCGTGGGGTCATGGGCGATGTGCGGCATCCCAACG
TCATCCGCGTTGCACCTTCCCCCTTATACACACGCTTTGTGGACGTGTGG
CGCTTCGTGATGATCTTAAAGGACGTGTTGGAAGAAGCTCGAGACTCACC
CCGGGAGACGAGGGAGAAGGGCTAAGTTGTCACGAGGGGATACGGGGGCC
GCTATTTGCCGCGGTTCACCCGCAGGATTGGAGCTAAAGTCAAACATCAC
GGCGAGCTTTTTGAACGAATGTACCACCAACATTTCGACAATATATGTAT
AATTTGCCCACTCTTCCTGGCAGAAAAAGAAAAAATGCATGCTCACATAC
GTTTC
back to top

protein sequence of rna866

>rna866-protein ID=rna866-protein|Name=rna866|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSV
RTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLK
FAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEA
LYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLK
DRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLAS
AVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN
back to top

mRNA from alignment at CM002456.1:599445..600616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna866 ID=rna866|Name=rna866|organism=Nannochloropsis gaditana|type=mRNA|length=1172bp|location=Sequence derived from alignment at CM002456.1:599445..600616+ (Nannochloropsis gaditana)
AGCGGCTGGGCAACTGAGAACGTAAACTTGTCTCATCCTCCCGCTATATG
ATACAGTTTCCGACTACTGCGGCCACATCTGCTTGTTGGATGTCGATATC
GTGCCCGTTTCCCTTTTATCTGGCCCTTACTGTCGTTGTTTTGACGCTGA
GGTGAGTTGAACAGGCATCTCTGCCCTACTAGCTAGGGCCTCCATGAATT
CCCATTCTCATGTTCTTAGTTTCCTTTTGCCGATTTGTTTCACGCAAACG
CTGTGATTAATTATGCACTAGGTCTAGCTGCGTGGCAGCTTTTTGTTTTC
CATCCCGACTGTCGGTTCGCACCTCAAAGAGCTATATCCGGAGCCGCCAA
AACAGTGTTGTCATGTCTATCTCACCGCATATAAAGGGAATATGTTTTGA
CATGGACGGCACCCTCACTAATAGTGATGATTTACACTTTGAAACTTACC
GAGATACTCTTTTGAAATTTGCCCCCGAGTACAATGACGGCCGCCCTCTG
GAGCGCGCCTTCTACGACCAAAAACTCTCTGGGAGCGCGAATGAAATCAT
TGTCCCCATGCTCCTTCCTCACTGGCCCCAAGACCGCATGGAGGAGCTAT
GGCTTGCCAAGGAAGCATTGTACCGAGAACGATCGGCAAACATCTCTCCT
CTGCCCGGAGTAATTCGCTTGCTGGACTGGTGCACGGAAAATAAGATCGG
ATATGTACTCGTCACCAATGCCCCGCGCGTCGAGTGCCTTCATACCCTCC
ACTCTTTGAAGCTCAAGGATCGATTCCATGACAGTAAAATAATAATTGGA
CAAGAAATGGCGAGGCCAAAACCGTTTCCTGACGCTTACAATGAAGGCTT
GCGCCGCTTGGGTCTCGCCGCAAAGGAGTGCATTGCCTTCGAAGATTCTT
TCAGCGGTCTGGCCTCGGCTGTCGCGGCCGGAATTCCCACCGTTGCGGTG
TTGACGAGTCGTTCCGAAGCAGAGATGATCGACCGAGGAGCATTCATGTC
GGTGAAGGATTTTGATGAGCCGAGTTTGTGGGCTCTCTTAGAGGCCAAGA
ATTAGTCACTGAAATGATTGATTGTGCATCTGAAAGGAATAAAGATCACC
GAATCATCATGCATGGCTTCTCGCGGGGGATGAAATACGCTACAAAGAAA
ATGACGCTAAGTCGAGTCCCGC
back to top

Coding sequence (CDS) from alignment at CM002456.1:599445..600616+

>rna866 ID=rna866|Name=rna866|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002456.1:599445..600616+ (Nannochloropsis gaditana)
ATGATACAGTTTCCGACTACTGCGGCCACATCTGCTTGTTGGATGTCGAT
ATCGTGCCCGTTTCCCTTTTATCTGGCCCTTACTGTCGTTGTTTTGACGC
TGAGGTCTAGCTGCGTGGCAGCTTTTTGTTTTCCATCCCGACTGTCGGTT
CGCACCTCAAAGAGCTATATCCGGAGCCGCCAAAACAGTGTTGTCATGTC
TATCTCACCGCATATAAAGGGAATATGTTTTGACATGGACGGCACCCTCA
CTAATAGTGATGATTTACACTTTGAAACTTACCGAGATACTCTTTTGAAA
TTTGCCCCCGAGTACAATGACGGCCGCCCTCTGGAGCGCGCCTTCTACGA
CCAAAAACTCTCTGGGAGCGCGAATGAAATCATTGTCCCCATGCTCCTTC
CTCACTGGCCCCAAGACCGCATGGAGGAGCTATGGCTTGCCAAGGAAGCA
TTGTACCGAGAACGATCGGCAAACATCTCTCCTCTGCCCGGAGTAATTCG
CTTGCTGGACTGGTGCACGGAAAATAAGATCGGATATGTACTCGTCACCA
ATGCCCCGCGCGTCGAGTGCCTTCATACCCTCCACTCTTTGAAGCTCAAG
GATCGATTCCATGACAGTAAAATAATAATTGGACAAGAAATGGCGAGGCC
AAAACCGTTTCCTGACGCTTACAATGAAGGCTTGCGCCGCTTGGGTCTCG
CCGCAAAGGAGTGCATTGCCTTCGAAGATTCTTTCAGCGGTCTGGCCTCG
GCTGTCGCGGCCGGAATTCCCACCGTTGCGGTGTTGACGAGTCGTTCCGA
AGCAGAGATGATCGACCGAGGAGCATTCATGTCGGTGAAGGATTTTGATG
AGCCGAGTTTGTGGGCTCTCTTAGAGGCCAAGAATTAGATGATACAGTTT
CCGACTACTGCGGCCACATCTGCTTGTTGGATGTCGATATCGTGCCCGTT
TCCCTTTTATCTGGCCCTTACTGTCGTTGTTTTGACGCTGAGGTCTAGCT
GCGTGGCAGCTTTTTGTTTTCCATCCCGACTGTCGGTTCGCACCTCAAAG
AGCTATATCCGGAGCCGCCAAAACAGTGTTGTCATGTCTATCTCACCGCA
TATAAAGGGAATATGTTTTGACATGGACGGCACCCTCACTAATAGTGATG
ATTTACACTTTGAAACTTACCGAGATACTCTTTTGAAATTTGCCCCCGAG
TACAATGACGGCCGCCCTCTGGAGCGCGCCTTCTACGACCAAAAACTCTC
TGGGAGCGCGAATGAAATCATTGTCCCCATGCTCCTTCCTCACTGGCCCC
AAGACCGCATGGAGGAGCTATGGCTTGCCAAGGAAGCATTGTACCGAGAA
CGATCGGCAAACATCTCTCCTCTGCCCGGAGTAATTCGCTTGCTGGACTG
GTGCACGGAAAATAAGATCGGATATGTACTCGTCACCAATGCCCCGCGCG
TCGAGTGCCTTCATACCCTCCACTCTTTGAAGCTCAAGGATCGATTCCAT
GACAGTAAAATAATAATTGGACAAGAAATGGCGAGGCCAAAACCGTTTCC
TGACGCTTACAATGAAGGCTTGCGCCGCTTGGGTCTCGCCGCAAAGGAGT
GCATTGCCTTCGAAGATTCTTTCAGCGGTCTGGCCTCGGCTGTCGCGGCC
GGAATTCCCACCGTTGCGGTGTTGACGAGTCGTTCCGAAGCAGAGATGAT
CGACCGAGGAGCATTCATGTCGGTGAAGGATTTTGATGAGCCGAGTTTGT
GGGCTCTCTTAGAGGCCAAGAATTAG
back to top
Synonyms
Publications