EWM29820.1, cds866 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|585112401|gb|EWM29820.1| (had family hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query: 1 MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN 295
MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN
Sbjct: 1 MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN 295
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|299116083|emb|CBN74499.1| (haloacid dehalogenase-like hydrolase family protein [Ectocarpus siliculosus]) HSP 1 Score: 184.496 bits (467), Expect = 4.031e-54 Identity = 96/213 (45.07%), Postives = 130/213 (61.03%), Query Frame = 0
Query: 79 MDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291
MDGTLT+SD LHFE YR+T LK P +N G + R +YD +SG++N IV L P + LW AKE +YR+ S ++ LPG++ LD C + +LVTNAPR++ +HTL+ L L DRF ++ ++IG E R KP PD Y EGL RL L A C+AFEDS +G++SAV+AG+ T V E G + V D+ + L A L
Sbjct: 1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEET-MVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAAL 212
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1189188223|ref|WP_085615565.1| (MULTISPECIES: haloacid dehalogenase [Pseudomonas]) HSP 1 Score: 176.407 bits (446), Expect = 6.305e-51 Identity = 89/223 (39.91%), Postives = 141/223 (63.23%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAK 294
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ +EL KEAL+R+ S + P+PG++RLL+ + IG +VTNAPR+ H L+++ L RF +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ ++ GA + + DF++P+LWAL+E +
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHARAHDIGMCVVTNAPRLNAEHMLNAMGLGQRF--EHVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAGLVIDDFNDPALWALIERR 217
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|515085663|ref|WP_016715310.1| (MULTISPECIES: HAD family phosphatase [Pseudomonas] >gi|936609589|gb|KPM59212.1| haloacid dehalogenase [Pseudomonas putida] >gi|1028001633|gb|OAH56490.1| haloacid dehalogenase [Pseudomonas monteilii]) HSP 1 Score: 176.022 bits (445), Expect = 7.658e-51 Identity = 90/222 (40.54%), Postives = 140/222 (63.06%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ + L KEAL+R+ S ++ P+PG++RLL IG +VTNAPR+ H L+++ L RF + +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ ++ GA + V DFD+P+LWAL+E+
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRDMSPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAAQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGARLVVNDFDDPALWALIES 216
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|644594847|ref|WP_025339262.1| (HAD family phosphatase [Pseudomonas sp. FGI182] >gi|568240029|gb|AHD14751.1| HAD family hydrolase [Pseudomonas sp. FGI182]) HSP 1 Score: 175.637 bits (444), Expect = 1.014e-50 Identity = 89/223 (39.91%), Postives = 140/223 (62.78%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAK 294
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ +EL KEAL+R+ S + P+PG++RLL+ IG +VTNAPR+ H L+++ L RF +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ ++ GA + + DF++P+LWAL+E +
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHARARDIGMCVVTNAPRLNAEHMLNAMGLGQRFE--HVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAGLVIDDFNDPALWALIERR 217
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|983313943|ref|WP_060499328.1| (haloacid dehalogenase [Pseudomonas sp. NBRC 111133]) HSP 1 Score: 175.252 bits (443), Expect = 1.343e-50 Identity = 90/222 (40.54%), Postives = 140/222 (63.06%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ + L KEAL+R+ S ++ P+PG++RLL IG +VTNAPR+ H L+++ L RF + +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ ++ GA + V DFD+P+LWAL+E+
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRDISPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAAQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAKLVVNDFDDPALWALIES 216
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1125701800|ref|WP_075045310.1| (HAD family phosphatase [Pseudomonas sp. DRA525] >gi|1120732183|gb|APO82629.1| haloacid dehalogenase [Pseudomonas sp. DRA525]) HSP 1 Score: 175.252 bits (443), Expect = 1.529e-50 Identity = 88/220 (40.00%), Postives = 140/220 (63.64%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ +EL KEAL+R+ S + P+PG++RLL+ IG +VTNAPR+ H L+++ L RF + +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ ++ GA + V+DF++P+LW+L+
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHAQARDIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAKLVVRDFNDPALWSLI 214
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1022667955|ref|WP_063424158.1| (HAD family phosphatase [Pseudomonas putida] >gi|1021684288|gb|KZO54381.1| haloacid dehalogenase [Pseudomonas putida]) HSP 1 Score: 175.252 bits (443), Expect = 1.759e-50 Identity = 88/221 (39.82%), Postives = 140/221 (63.35%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLE 292
+ + FD+DGTLT++D LH + +R L + DGR L +A +D ++SG AN + L ++ + L KEAL+R S +++P+PG++RLL+ + IG +VTNAPR+ H L+++ L +F +++ +E+ARPKP P Y GL+RLG A++ +AFEDS G+A+A AGI TV V T+++ ++ GA + V DF++P+LWAL+E
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----QDGRELSQAQFDAQVSGRANGELFAELFSGASVEQCQALADRKEALFRALSTSLAPMPGLLRLLEHAKAHDIGMCVVTNAPRLNAEHMLNAMGLGQQFE--HVLVAEELARPKPDPLPYLTGLQRLGAEARQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLQAGAKLVVNDFNDPALWALIE 215
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|512742852|ref|WP_016499560.1| (HAD family phosphatase [Pseudomonas putida] >gi|512383489|dbj|BAN54339.1| hypothetical protein PP4_24860 [Pseudomonas putida NBRC 14164]) HSP 1 Score: 174.866 bits (442), Expect = 1.897e-50 Identity = 88/221 (39.82%), Postives = 142/221 (64.25%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLE 292
+ + FD+DGTLT++D LH + +R L + +DGR L +A +D ++SG AN + L ++ + L KEAL+R+ S ++ P+PG++RLL+ + IG +VTNAPR+ H L+++ L +F +++ +E+ARPKP P Y GL+RLG A++ +AFEDS G+A+A AGI TV V T+++ +++ GA + V DF++P+LWAL+E
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSGASVEQCQALADRKEALFRDLSPSLDPMPGLLRLLEHAKAHDIGMCVVTNAPRLNAEHMLNAMGLGQQF--EHVLVAEELARPKPDPLPYLTGLQRLGAEARQALAFEDSLPGVAAASGAGIFTVGVATTQTPQRLLEAGAKLVVNDFNDPALWALIE 215
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|517928885|ref|WP_019099093.1| (MULTISPECIES: HAD family phosphatase [Pseudomonas] >gi|1175076987|emb|SMD10767.1| haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [Pseudomonas sp. URIL14HWK12:I5]) HSP 1 Score: 174.866 bits (442), Expect = 2.329e-50 Identity = 90/222 (40.54%), Postives = 137/222 (61.71%), Query Frame = 0
Query: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
+ + FD+DGTLT++D LH + +R L + DGR L +A +D ++SG AN + L ++ + L KEAL+R S ++ P+PG++RLL IG +VTNAPR+ H L+++ L RF + +++ +E+ARPKP P Y GL+RLG A + +AFEDS G+A+A AGI TV V T+++ + GA + V DFD+P+LWAL+E+
Sbjct: 2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----QDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRNMSPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEATQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLFAAGARLVVNDFDDPALWALIES 216 The following BLAST results are available for this feature:
BLAST of EWM29820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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