EWM29820.1, cds866 (CDS) Nannochloropsis gaditana

Overview
NameEWM29820.1
Unique Namecds866
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:599492..599595 +
Alignment locationCM002456.1:599716..600499 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29820.1
Producthad family hydrolase
Orig transcript idgnl|cribi|Naga_100017g58.318.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:599492..599595 +
CM002456.1supercontigCM002456.1:599716..600499 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR006439HAD-SF_hydro_IA
Homology
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|585112401|gb|EWM29820.1| (had family hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN 295
            MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN
Sbjct:    1 MIQFPTTAATSACWMSISCPFPFYLALTVVVLTLRSSCVAAFCFPSRLSVRTSKSYIRSRQNSVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAKN 295          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|299116083|emb|CBN74499.1| (haloacid dehalogenase-like hydrolase family protein [Ectocarpus siliculosus])

HSP 1 Score: 184.496 bits (467), Expect = 4.031e-54
Identity = 96/213 (45.07%), Postives = 130/213 (61.03%), Query Frame = 0
Query:   79 MDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291
            MDGTLT+SD LHFE YR+T LK  P +N G  + R +YD  +SG++N  IV  L P    +    LW AKE +YR+ S  ++ LPG++  LD C    +  +LVTNAPR++ +HTL+ L L DRF ++ ++IG E  R KP PD Y EGL RL L A  C+AFEDS +G++SAV+AG+ T  V     E      G  + V D+ +  L A L
Sbjct:    1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEET-MVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAAL 212          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1189188223|ref|WP_085615565.1| (MULTISPECIES: haloacid dehalogenase [Pseudomonas])

HSP 1 Score: 176.407 bits (446), Expect = 6.305e-51
Identity = 89/223 (39.91%), Postives = 141/223 (63.23%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAK 294
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ +EL   KEAL+R+ S  + P+PG++RLL+    + IG  +VTNAPR+   H L+++ L  RF    +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   ++  GA + + DF++P+LWAL+E +
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHARAHDIGMCVVTNAPRLNAEHMLNAMGLGQRF--EHVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAGLVIDDFNDPALWALIERR 217          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|515085663|ref|WP_016715310.1| (MULTISPECIES: HAD family phosphatase [Pseudomonas] >gi|936609589|gb|KPM59212.1| haloacid dehalogenase [Pseudomonas putida] >gi|1028001633|gb|OAH56490.1| haloacid dehalogenase [Pseudomonas monteilii])

HSP 1 Score: 176.022 bits (445), Expect = 7.658e-51
Identity = 90/222 (40.54%), Postives = 140/222 (63.06%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ + L   KEAL+R+ S ++ P+PG++RLL       IG  +VTNAPR+   H L+++ L  RF  + +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   ++  GA + V DFD+P+LWAL+E+
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRDMSPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAAQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGARLVVNDFDDPALWALIES 216          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|644594847|ref|WP_025339262.1| (HAD family phosphatase [Pseudomonas sp. FGI182] >gi|568240029|gb|AHD14751.1| HAD family hydrolase [Pseudomonas sp. FGI182])

HSP 1 Score: 175.637 bits (444), Expect = 1.014e-50
Identity = 89/223 (39.91%), Postives = 140/223 (62.78%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEAK 294
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ +EL   KEAL+R+ S  + P+PG++RLL+      IG  +VTNAPR+   H L+++ L  RF    +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   ++  GA + + DF++P+LWAL+E +
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHARARDIGMCVVTNAPRLNAEHMLNAMGLGQRFE--HVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAGLVIDDFNDPALWALIERR 217          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|983313943|ref|WP_060499328.1| (haloacid dehalogenase [Pseudomonas sp. NBRC 111133])

HSP 1 Score: 175.252 bits (443), Expect = 1.343e-50
Identity = 90/222 (40.54%), Postives = 140/222 (63.06%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ + L   KEAL+R+ S ++ P+PG++RLL       IG  +VTNAPR+   H L+++ L  RF  + +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   ++  GA + V DFD+P+LWAL+E+
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRDISPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAAQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAKLVVNDFDDPALWALIES 216          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1125701800|ref|WP_075045310.1| (HAD family phosphatase [Pseudomonas sp. DRA525] >gi|1120732183|gb|APO82629.1| haloacid dehalogenase [Pseudomonas sp. DRA525])

HSP 1 Score: 175.252 bits (443), Expect = 1.529e-50
Identity = 88/220 (40.00%), Postives = 140/220 (63.64%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ +EL   KEAL+R+ S  + P+PG++RLL+      IG  +VTNAPR+   H L+++ L  RF  + +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   ++  GA + V+DF++P+LW+L+
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFAGASAEQCQELADRKEALFRDMSPALEPMPGLVRLLEHAQARDIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEAGQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLAAGAKLVVRDFNDPALWSLI 214          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|1022667955|ref|WP_063424158.1| (HAD family phosphatase [Pseudomonas putida] >gi|1021684288|gb|KZO54381.1| haloacid dehalogenase [Pseudomonas putida])

HSP 1 Score: 175.252 bits (443), Expect = 1.759e-50
Identity = 88/221 (39.82%), Postives = 140/221 (63.35%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLE 292
            +  + FD+DGTLT++D LH + +R  L +      DGR L +A +D ++SG AN  +   L      ++ + L   KEAL+R  S +++P+PG++RLL+    + IG  +VTNAPR+   H L+++ L  +F    +++ +E+ARPKP P  Y  GL+RLG  A++ +AFEDS  G+A+A  AGI TV V T+++   ++  GA + V DF++P+LWAL+E
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----QDGRELSQAQFDAQVSGRANGELFAELFSGASVEQCQALADRKEALFRALSTSLAPMPGLLRLLEHAKAHDIGMCVVTNAPRLNAEHMLNAMGLGQQFE--HVLVAEELARPKPDPLPYLTGLQRLGAEARQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLLQAGAKLVVNDFNDPALWALIE 215          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|512742852|ref|WP_016499560.1| (HAD family phosphatase [Pseudomonas putida] >gi|512383489|dbj|BAN54339.1| hypothetical protein PP4_24860 [Pseudomonas putida NBRC 14164])

HSP 1 Score: 174.866 bits (442), Expect = 1.897e-50
Identity = 88/221 (39.82%), Postives = 142/221 (64.25%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLE 292
            +  + FD+DGTLT++D LH + +R  L +     +DGR L +A +D ++SG AN  +   L      ++ + L   KEAL+R+ S ++ P+PG++RLL+    + IG  +VTNAPR+   H L+++ L  +F    +++ +E+ARPKP P  Y  GL+RLG  A++ +AFEDS  G+A+A  AGI TV V T+++   +++ GA + V DF++P+LWAL+E
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSQAQFDAQVSGRANGELFAELFSGASVEQCQALADRKEALFRDLSPSLDPMPGLLRLLEHAKAHDIGMCVVTNAPRLNAEHMLNAMGLGQQF--EHVLVAEELARPKPDPLPYLTGLQRLGAEARQALAFEDSLPGVAAASGAGIFTVGVATTQTPQRLLEAGAKLVVNDFNDPALWALIE 215          
BLAST of EWM29820.1 vs. NCBI_GenBank
Match: gi|517928885|ref|WP_019099093.1| (MULTISPECIES: HAD family phosphatase [Pseudomonas] >gi|1175076987|emb|SMD10767.1| haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [Pseudomonas sp. URIL14HWK12:I5])

HSP 1 Score: 174.866 bits (442), Expect = 2.329e-50
Identity = 90/222 (40.54%), Postives = 137/222 (61.71%), Query Frame = 0
Query:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALLEA 293
            +  + FD+DGTLT++D LH + +R  L +      DGR L +A +D ++SG AN  +   L      ++ + L   KEAL+R  S ++ P+PG++RLL       IG  +VTNAPR+   H L+++ L  RF  + +++ +E+ARPKP P  Y  GL+RLG  A + +AFEDS  G+A+A  AGI TV V T+++   +   GA + V DFD+P+LWAL+E+
Sbjct:    2 LTALLFDLDGTLTDTDTLHLQAFRQLLRE-----QDGRELSQAQFDAQVSGRANGELFAELFSDASAEQCKALADRKEALFRNMSPSLEPMPGLLRLLAHAQARSIGMCVVTNAPRLNAEHMLNAMGLGQRF--AHVLVAEELARPKPDPLPYLTGLQRLGAEATQALAFEDSLPGVAAASGAGIFTVGVATTQTPERLFAAGARLVVNDFDDPALWALIES 216          
The following BLAST results are available for this feature:
BLAST of EWM29820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112401|gb|EWM29820.1|0.000e+0100.00had family hydrolase [Nannochloropsis gaditana][more]
gi|299116083|emb|CBN74499.1|4.031e-5445.07haloacid dehalogenase-like hydrolase family protei... [more]
gi|1189188223|ref|WP_085615565.1|6.305e-5139.91MULTISPECIES: haloacid dehalogenase [Pseudomonas][more]
gi|515085663|ref|WP_016715310.1|7.658e-5140.54MULTISPECIES: HAD family phosphatase [Pseudomonas]... [more]
gi|644594847|ref|WP_025339262.1|1.014e-5039.91HAD family phosphatase [Pseudomonas sp. FGI182] >g... [more]
gi|983313943|ref|WP_060499328.1|1.343e-5040.54haloacid dehalogenase [Pseudomonas sp. NBRC 111133... [more]
gi|1125701800|ref|WP_075045310.1|1.529e-5040.00HAD family phosphatase [Pseudomonas sp. DRA525] >g... [more]
gi|1022667955|ref|WP_063424158.1|1.759e-5039.82HAD family phosphatase [Pseudomonas putida] >gi|10... [more]
gi|512742852|ref|WP_016499560.1|1.897e-5039.82HAD family phosphatase [Pseudomonas putida] >gi|51... [more]
gi|517928885|ref|WP_019099093.1|2.329e-5040.54MULTISPECIES: HAD family phosphatase [Pseudomonas]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna866rna866Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications