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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100052g19.1155.mrna |
| Orig protein id | gnl|cribi|Naga_100052g19.1155 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:515198..517910 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8654 ID=rna8654|Name=rna8654|organism=Nannochloropsis gaditana|type=mRNA|length=1170bp
ATGATCACGAGACATTGCAGCTTGTTGCCGCGTTCCCTACGGCTTGATTC
GGTACTTCTGGTGACTCTTCTTTTAATACTTGTGTCCAGCTTTTCGAAGA
CCTCTGCTTACAGCTTCCGTTTACGAATGGTAGAGGGACACGGCTGTCAT
CGAGTTGTCGCGGCGCATCGTCGCCTCTTGCTAGGGCATGTGTTTCAGGC
CACATCTCCAAATGGCCGCTTTTTAGAAGGGGCAAAGCTGATCGATGGAA
AACGCCTTGCGCGTGTAGAGGCCGTGGGAAAGAATCTTTTCTACTTCTGG
ACACCGGCTGCTATCTTGCCAGGTACTCCTCCTCCACCGGTGGTGAAGCG
AGGAACGGGAAAAAGAAAGCCTATTGAGATAGCCACTAGCTCAGAAGAAA
CTGTGGTTATGCATGTCCATTTCGGAATGAGTGGGGCCTTCTCTGTCTCT
CCCTTTCCGGGCAAGGTGGCCACTCCGACCACGCGGTTGTTTCTTGTGAA
CAAGGAGCGGAACCTCACAGCGTCGCTCTCTGCAATGACTTGCGTGCATG
GTGGTCTTGAATTGTTCGAGGGGAAGCTTGAGGCTCTAGGCCCCGATCCA
TTGCGCGAGGACGCCGACAAGGAGAGGCTGTGGGGAAAGATGCAGGCCAC
GAGCAAGGCGATCGGGCAGATCCTTATGGACCAGTCCTGTGTAGCGGGCA
TCGGAAATATCTACCGAGCCGAGATTCTCTTCAAGAGCGGGGTCCACCCT
GAGCAGCCGGCCAACACCGTCGCCCACGCCGCGTTCGAGACGCTCTGGAT
GCACTCGGTGCTCTTGCTGCAGCGCGGCTTCACCTCCGGCAGCATCCTTA
CTGTCGACCCGTCCGAAGCCTCCCGGCTCGGCCCACCCTGGACTCGGCGG
TATATCTACAACCACAGTCATTGCGGGCGCTGCGGCTCTCGCATCCAAAA
CTGGTCCATGGCCGGGCGCACTGCGACTCAGGAACAAACGGCAGCGCCAG
GGCAGCCCCAAAATAGAGTGGGCAGCGGATGTAGCCGTCATAGATCAAAC
GGACTTGATGGAGAGTATACTAGCCGCGGAAAGCGAGTAACAGAAAAACA
AGGGCAAAGGGAGTCGAGTACAGGCTCCTCAATTTCGACTTTGTACATGT
ATACAGTTGCGTCTGCGTGA back to topprotein sequence of rna8654 >rna8654-protein ID=rna8654-protein|Name=rna8654|organism=Nannochloropsis gaditana|type=polypeptide|length=647bp
MPSKIFFSLISGVALASAGSKGLLRGNTQEDSSRRLSWTNPLLGAHHGAQ
PAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTS
SVTLVLKSFCTPFSFPVSAVEGSPVHPMVAAKFDVCGTDVKTDESWVCIN
HFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGG
WETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEG
NCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTT
WPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSE
FCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQ
DVDGSSQEGGDASSSTVSSNNQDIVPAEEPNDGSDDSSVSITPAPSAQPT
PEPSSEEGNDSSVSITPAPSAQPTPEPTSEGVDDSSVSITPAPSAQPTPE
PTSEGVDDSSVSITPADVEEPAVDSPYIPPTPVECGETVTFELGVDGPGI
LFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDD
TCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVYDRR back to topmRNA from alignment at KK037249.1:515198..517910- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8654 ID=rna8654|Name=rna8654|organism=Nannochloropsis gaditana|type=mRNA|length=2713bp|location=Sequence derived from alignment at KK037249.1:515198..517910- (Nannochloropsis gaditana)
AACTCTTTTTCACCTACTTTCGCCCACATTCAGAAGTTTACCAAAAAATG
CCTTCAAAAATATTCTTTTCGCTGATCAGCGGCGTGGCTTTAGCCAGCGC
GGGGAGCAAGGGCCTCTTGGTGAGAAACATGGATGCTTGAAGTGTCTAAT
CTGTCTCAGAGCATATTTACCTCATTAGACCACCTGCGTGATCTACAGGT
TCTGCACTCCTGATTGTTTGGTTCATCTTCCCTTCCTCACGAATGCATAT
GTGCCACTGATGCCATTCTGTCCTCGCATGCCACCACAGCGTGGAAATAC
ACAAGAAGATTCGTCCCGTCGTTTGTCGTGGACGAACCCGTTGCTTGGCG
CGCACCATGGCGCCCAGCCTGCGCCTGAGGAAATTTGCGCGCTTAAGGCT
GAAGTTATGTCACCGTGCAACATGTGGGCTTTCGTGAATGGGCAGTCCTT
GGACGCGTCCATGGGCTTCGGCAACGGACCCACGCACTCATCGATGGCAC
TTCCCCAAAACACGAGCAGCGTCACCTTGGTGCTCAAGTCCTTTTGCACG
CCCTTCTCATTCCCCGTCTCTGCCGTTGAGGGATCGCCCGTGCATCCGAT
GGTAGCCGCCAAATTCGATGTGTGCGGCACGGATGTCAAGACGGACGAGT
CCTGGGTGTGCATCAACCATTTTCCTGAAGAGGGCAGCTGGAGCTCCCCC
GACTTCGACGACAGCGCGTGGCCTAACGCTGTGAGGGTCGAGGCCAGCGG
GCTCCCTACTGGGTTCACCTACATCGCGGGCCCGACCGAAAGCTCAGACG
ATAGCCCCCATGGGGGTTGGGAGACCTTCTGTCGCAAGACGGTTTCTCTC
GCTGAAGACAGCGAAGAGGGCGCTGAGCCTCCGCCTGCGCCCCTGCCGGT
TGAGCCTGCGCTTCCTGGGCACCCCTCTTCGCCGCACGCTTGGATGATGA
ACATGACCGTGGAGGGGAACTGCAGCCTGGTCGACGTCGATATCCATGAT
CTCAGCACCAACTTTGGCTTCCTGTTCGGCCTCCTGGAGGAGCACGGTCA
CCCGCCCGTTGAGTGCGTCCTCACCGGGCATCGACCCTCTCCCGAGCACA
GCCCCACCGACACGACCTGGCCTTGCGCCCACATCCCGGACCCCTGCCTC
TTCCAGTTCGTCTTCACCGGCGTTCAGGCCTTCCTGACCCCTGAGATCAT
CATGCAGGCCCTGGAGGACCCGACCTTCGCCAGCATCTTCGACACCCGCA
ACTCCTCTTCCAGCGAATTTTGCCAGGTCCAAAGCGTGACGATTGAGGAC
CAAGAGACGACGCCGGGGCCCGATCCCTCCTCCGAAGACGTGGGCGGCAG
CACCGTCAACATGCCGCAGCCTTTGGATAACTCCGAAAACCAAGTTTCTA
GCCCCGAGCAGCCCCAGGACGTGGACGGGTCCAGCCAGGAGGGTGGCGAC
GCCTCCTCAAGCACCGTTTCCTCCAACAATCAAGATATAGTGCCGGCTGA
AGAGCCCAATGACGGAAGCGACGACTCTTCCGTGTCCATCACGCCCGCCC
CCTCCGCGCAGCCAACGCCCGAACCCTCATCAGAGGAGGGCAACGACTCT
TCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAACCCAC
TTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCG
CGCAGCCAACGCCCGAACCCACTTCAGAGGGGGTCGACGACTCTTCCGTG
TCCATCACACCGGCCGACGTGGAGGAACCTGCCGTCGATTCCCCCTACAT
CCCCCCCACCCCCGTCGAATGCGGGGAGACAGTTACCTTCGAGCTAGGCG
TGGATGGTCCCGGCATTTTGTTCAAGCTGGACTCCGCGAACGAAGGTGAT
GTTAAGGTGCGAGCCACGACCTGCCTGGAGAGCACCAAAGCAGACACTGT
CGTCTCTGTCTACGACCAGAAGCCCTCAGAGGGTGTGGAGCCCATCGCCA
GCAACGACGACGACGACACATGCGAGGTGAACCCGACCTCCTCCACGGCC
AGCACCACCCTGTTGGATGACAGCTCCGTGTACATCCATGTGGCCAACAA
GGGTGCGTATGCCGGGGCGGTCTCTCTCAAGGTACATTGCGGGGTCTATG
ACCGCCGCTAAGCCCTTTTTTGGGTGTGTGAAGTATAGGAAGTCAGTTGA
AATCTATGGTATTGCGACTATTTTATGGAATTGTTACATTGAATGCGTCA
AGCACAAAAGCAAATCTGGTTGAAAAAAATGTTGGTGACTTGTCTTACTC
AGGATGCATGGTGTGCATGCCAGAAAATGCAAAGACTATATGAAAAGTGA
GAGCGAAATGAATTCTCCATTCCGAAAATGGTGGGAACCATTTTAAGTAG
AACTCATCGACCAGCTACATGGAAAATTTTAAATCATTCGTCAATTTAGA
TCAAAAGTGAGATAATGAATTGTAGGACTTCAAGAATTCCGAGATGTACT
GATTCTAGCGCCAGAGGGTGCGTTAATTGAGGTAAAGATAAAGTGGAACC
ATTTCTTCGCGACAATGCGAAACCCTTAGGTCACACATCCAAGCGTGCGG
CCCATGTCAATTTCTTGCGGATCGTGAGGGCCGTGCCAAAAAGCTAATCG
TGGTCTTTGAACTTCTCGTACTCCTGTGCACTTGACCTTAACTAATTACT
TTCATTAATTCCG back to topCoding sequence (CDS) from alignment at KK037249.1:515198..517910- >rna8654 ID=rna8654|Name=rna8654|organism=Nannochloropsis gaditana|type=CDS|length=3888bp|location=Sequence derived from alignment at KK037249.1:515198..517910- (Nannochloropsis gaditana)
CGTGGAAATACACAAGAAGATTCGTCCCGTCGTTTGTCGTGGACGAACCC
GTTGCTTGGCGCGCACCATGGCGCCCAGCCTGCGCCTGAGGAAATTTGCG
CGCTTAAGGCTGAAGTTATGTCACCGTGCAACATGTGGGCTTTCGTGAAT
GGGCAGTCCTTGGACGCGTCCATGGGCTTCGGCAACGGACCCACGCACTC
ATCGATGGCACTTCCCCAAAACACGAGCAGCGTCACCTTGGTGCTCAAGT
CCTTTTGCACGCCCTTCTCATTCCCCGTCTCTGCCGTTGAGGGATCGCCC
GTGCATCCGATGGTAGCCGCCAAATTCGATGTGTGCGGCACGGATGTCAA
GACGGACGAGTCCTGGGTGTGCATCAACCATTTTCCTGAAGAGGGCAGCT
GGAGCTCCCCCGACTTCGACGACAGCGCGTGGCCTAACGCTGTGAGGGTC
GAGGCCAGCGGGCTCCCTACTGGGTTCACCTACATCGCGGGCCCGACCGA
AAGCTCAGACGATAGCCCCCATGGGGGTTGGGAGACCTTCTGTCGCAAGA
CGGTTTCTCTCGCTGAAGACAGCGAAGAGGGCGCTGAGCCTCCGCCTGCG
CCCCTGCCGGTTGAGCCTGCGCTTCCTGGGCACCCCTCTTCGCCGCACGC
TTGGATGATGAACATGACCGTGGAGGGGAACTGCAGCCTGGTCGACGTCG
ATATCCATGATCTCAGCACCAACTTTGGCTTCCTGTTCGGCCTCCTGGAG
GAGCACGGTCACCCGCCCGTTGAGTGCGTCCTCACCGGGCATCGACCCTC
TCCCGAGCACAGCCCCACCGACACGACCTGGCCTTGCGCCCACATCCCGG
ACCCCTGCCTCTTCCAGTTCGTCTTCACCGGCGTTCAGGCCTTCCTGACC
CCTGAGATCATCATGCAGGCCCTGGAGGACCCGACCTTCGCCAGCATCTT
CGACACCCGCAACTCCTCTTCCAGCGAATTTTGCCAGGTCCAAAGCGTGA
CGATTGAGGACCAAGAGACGACGCCGGGGCCCGATCCCTCCTCCGAAGAC
GTGGGCGGCAGCACCGTCAACATGCCGCAGCCTTTGGATAACTCCGAAAA
CCAAGTTTCTAGCCCCGAGCAGCCCCAGGACGTGGACGGGTCCAGCCAGG
AGGGTGGCGACGCCTCCTCAAGCACCGTTTCCTCCAACAATCAAGATATA
GTGCCGGCTGAAGAGCCCAATGACGGAAGCGACGACTCTTCCGTGTCCAT
CACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAACCCTCATCAGAGGAGG
GCAACGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACG
CCCGAACCCACTTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACGCC
CGCCCCCTCCGCGCAGCCAACGCCCGAACCCACTTCAGAGGGGGTCGACG
ACTCTTCCGTGTCCATCACACCGGCCGACGTGGAGGAACCTGCCGTCGAT
TCCCCCTACATCCCCCCCACCCCCGTCGAATGCGGGGAGACAGTTACCTT
CGAGCTAGGCGTGGATGGTCCCGGCATTTTGTTCAAGCTGGACTCCGCGA
ACGAAGGTGATGTTAAGGTGCGAGCCACGACCTGCCTGGAGAGCACCAAA
GCAGACACTGTCGTCTCTGTCTACGACCAGAAGCCCTCAGAGGGTGTGGA
GCCCATCGCCAGCAACGACGACGACGACACATGCGAGGTGAACCCGACCT
CCTCCACGGCCAGCACCACCCTGTTGGATGACAGCTCCGTGTACATCCAT
GTGGCCAACAAGGGTGCGTATGCCGGGGCGGTCTCTCTCAAGGTACATTG
CGGGGTCTATGACCGCCGCTAAATGCCTTCAAAAATATTCTTTTCGCTGA
TCAGCGGCGTGGCTTTAGCCAGCGCGGGGAGCAAGGGCCTCTTGCGTGGA
AATACACAAGAAGATTCGTCCCGTCGTTTGTCGTGGACGAACCCGTTGCT
TGGCGCGCACCATGGCGCCCAGCCTGCGCCTGAGGAAATTTGCGCGCTTA
AGGCTGAAGTTATGTCACCGTGCAACATGTGGGCTTTCGTGAATGGGCAG
TCCTTGGACGCGTCCATGGGCTTCGGCAACGGACCCACGCACTCATCGAT
GGCACTTCCCCAAAACACGAGCAGCGTCACCTTGGTGCTCAAGTCCTTTT
GCACGCCCTTCTCATTCCCCGTCTCTGCCGTTGAGGGATCGCCCGTGCAT
CCGATGGTAGCCGCCAAATTCGATGTGTGCGGCACGGATGTCAAGACGGA
CGAGTCCTGGGTGTGCATCAACCATTTTCCTGAAGAGGGCAGCTGGAGCT
CCCCCGACTTCGACGACAGCGCGTGGCCTAACGCTGTGAGGGTCGAGGCC
AGCGGGCTCCCTACTGGGTTCACCTACATCGCGGGCCCGACCGAAAGCTC
AGACGATAGCCCCCATGGGGGTTGGGAGACCTTCTGTCGCAAGACGGTTT
CTCTCGCTGAAGACAGCGAAGAGGGCGCTGAGCCTCCGCCTGCGCCCCTG
CCGGTTGAGCCTGCGCTTCCTGGGCACCCCTCTTCGCCGCACGCTTGGAT
GATGAACATGACCGTGGAGGGGAACTGCAGCCTGGTCGACGTCGATATCC
ATGATCTCAGCACCAACTTTGGCTTCCTGTTCGGCCTCCTGGAGGAGCAC
GGTCACCCGCCCGTTGAGTGCGTCCTCACCGGGCATCGACCCTCTCCCGA
GCACAGCCCCACCGACACGACCTGGCCTTGCGCCCACATCCCGGACCCCT
GCCTCTTCCAGTTCGTCTTCACCGGCGTTCAGGCCTTCCTGACCCCTGAG
ATCATCATGCAGGCCCTGGAGGACCCGACCTTCGCCAGCATCTTCGACAC
CCGCAACTCCTCTTCCAGCGAATTTTGCCAGGTCCAAAGCGTGACGATTG
AGGACCAAGAGACGACGCCGGGGCCCGATCCCTCCTCCGAAGACGTGGGC
GGCAGCACCGTCAACATGCCGCAGCCTTTGGATAACTCCGAAAACCAAGT
TTCTAGCCCCGAGCAGCCCCAGGACGTGGACGGGTCCAGCCAGGAGGGTG
GCGACGCCTCCTCAAGCACCGTTTCCTCCAACAATCAAGATATAGTGCCG
GCTGAAGAGCCCAATGACGGAAGCGACGACTCTTCCGTGTCCATCACGCC
CGCCCCCTCCGCGCAGCCAACGCCCGAACCCTCATCAGAGGAGGGCAACG
ACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAA
CCCACTTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACGCCCGCCCC
CTCCGCGCAGCCAACGCCCGAACCCACTTCAGAGGGGGTCGACGACTCTT
CCGTGTCCATCACACCGGCCGACGTGGAGGAACCTGCCGTCGATTCCCCC
TACATCCCCCCCACCCCCGTCGAATGCGGGGAGACAGTTACCTTCGAGCT
AGGCGTGGATGGTCCCGGCATTTTGTTCAAGCTGGACTCCGCGAACGAAG
GTGATGTTAAGGTGCGAGCCACGACCTGCCTGGAGAGCACCAAAGCAGAC
ACTGTCGTCTCTGTCTACGACCAGAAGCCCTCAGAGGGTGTGGAGCCCAT
CGCCAGCAACGACGACGACGACACATGCGAGGTGAACCCGACCTCCTCCA
CGGCCAGCACCACCCTGTTGGATGACAGCTCCGTGTACATCCATGTGGCC
AACAAGGGTGCGTATGCCGGGGCGGTCTCTCTCAAGGTACATTGCGGGGT
CTATGACCGCCGCTAAATGCCTTCAAAAATATTCTTTTCGCTGATCAGCG
GCGTGGCTTTAGCCAGCGCGGGGAGCAAGGGCCTCTTG back to top
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