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Properties
| Property Name | Value |
|---|
| Product | phytoene synthase |
| Orig transcript id | gnl|cribi|Naga_100052g15.1162.mrna |
| Orig protein id | gnl|cribi|Naga_100052g15.1162 |
| Gene | PSY |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:505193..507903 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8650 ID=rna8650|Name=rna8650|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp
CCTCACCTCTCAGAGATTAAACCCTTCGCCACCCCCTAGGAAAACGATGA
ATCGTTTGCTTTTTGGTCTTTTCGCAGCCGTCGTCGCTCTCCAGAGCGCT
ATGAGCACTGCTATCGATAAGGATGGCAGCGTTCTTGTTCTTACAGACTC
AAACTTTGAAGATGCCATCAAGGAGCACAAACTCTTGTTGGTGGACTTCT
ATGCCCCCTGGTGCGGACACTGCAAGAGACTTGAACCTGCGTACGCTGAA
GCGGCCGACATCCTGGCTGCCTTGGAGGAGCCTATCTTCATCGCGAAGCT
CGACGCCACCGAGCACAAAGAGGCTGCGGCAAAGCACGGGGTCCGGGGAT
ACCCTACCCTCAAACTTTTCAAAAACGGCGTCCCTATGGATTACCAGGGC
GGGCGCACGGCCGAGGAGATTTCCGCCTACATGATCAAGAAGTCGGGTCC
CGCAGTCACCACTGTCACGTCGGTAGAGGAGGCGGAGGCCTTCTTCGCCA
AGCAACCCACGGCCGCGCTCGCGCTCCTTGACTCCCTTGACAGTGACATC
GCTCTTGCCGTGACCACTTTTGCGGAATCCTCTGACAACGTCCCGTTCGC
GTATACCGCCGAGCCCGCGGTCCTCACTAACTACGGCGCCAAGGCCGGCT
CCCTGCGTTTCGCCACCCCTGAAGCCGTTTTTACCCGATTCTTGGACTTT
ACCGGAGGGGTGACCGCCTTCGAGGAGCTGAACACATGGCTGTTCGGACA
TTCTATCGCCCCCATGTTCGAGTTCTCCCCCGAGAAGTCCATGCACCTGT
TCTCGGGGCCCATCCGCGTGCACCTGATTGCTTTCGGTGACGCCACCGAG
GCGGGCTTTGCGGACACGGTAGCCGCGATCAAGGAGGGTGCGAACAAATT
CCGCACGAAGGCCCTGTCCATTTTGGTCGGCAAGAACGAGACGCGCATCC
TGGAGGCCTTCGACCTCACCGAAAAGGACGTGCCCACGATGGTGATCGCT
GACATGCGGGCGGGGGCGATGAAACGCTTTTTCTTCGAAGGCGATATGGC
CAAGGCCTTTGACACGGAGAAGTTTCTGACTAACTTCTTCGCCGGGCACC
TGAAGGCGAAGCTCAAGAGCGAGGAACCGGTGCCGGAGGACATGGAGAAG
GCTGTGAAGGTGATCAAGGGAAAGAGCTTCCAGAAGGAGGTGCTCGAGTC
AGACAAGGACGTGCTCATGGAGTTTTACGCCCCGTGGTGCGGGCACTGCA
AAACCCTGGAGCCCAAGTGGGACGTGCTGGGCGACCGGCTCGCTGGTGTG
GAGCACGTGATGACCGCCAAGATGGACTACACGGCCAACGAGCTCGACGT
GCCCGGGGTCGACATTCGCGGATTCCCCACCATCCTCTTCTTCCCCGCCG
ACAAGACCAAGGAGCCCGTCGTCTACAAGGGGGGCCGGGAGGTGCCCGAC
TTCCTGGCATTCTTGAAGGAGCATGCTAGCAAGCCCTTTGAGGTGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGAAAGAGGAGCTGTAAACCA
CAGAAAGCAGAGTCAAAAAATCCGATGGACAGGCACGAAACCCTGGCACA
TCATTAATATCCCTGAATGATGCACAAGAGAAAGCGTTTGCGGAAGCAAC
AAGCGAGTGCCATGTGGGCGGGTATTAAAAGTCAGTGGCGAAAGTCTTTT
GATAGCTCAAGTACTGGAGAGTTGATGAGACGGGAAAATGCGGATAAAAA
TATGTGGGAGAACTCCTAAGGTCAGTTGATATTAAAATCTTTTCCCCTTT
CGTCTGCCATGCTAGGCAACAAAGAAATCGTACCCTGCCGAATTACAGTG
GTCATGATTGGTATAAGAGAACAATAGAGAGAAGAGCAATGATAGTGAAA
GAATTGAATCTGAAGGAACTCAGGGCAAGAAGATAAGCCTTT back to topprotein sequence of rna8650 >rna8650-protein ID=rna8650-protein|Name=rna8650|organism=Nannochloropsis gaditana|type=polypeptide|length=596bp
MGEVTQHQHNDGGEATRRGWSQMDRRDVRSLARRRYRTVTAEAAVVPAAV
SSFLWSTTRRRRDASREERAHQGIREGTRPRWRGGAGSKAREALSGHLIF
VGLLMVVAAMSWAPLPATAFMSPPSVPAIPRTLATRVIGRRYVASKISAG
AGIKSSSKGNGMSSSSAGSPAGNSHHKNNKHPNHHAHSPHSHTAAASPAA
LQPPKSLMTASSLGSQQASVDTSRSKNTITRAVASTASAGGYVPNSIAPP
QPQVSPPAPQAPLTSDAIPPDVLWGESGRMASSGSVGGVELPVDEEHRAA
LLAEAYAECQRITSIYAKTFYMGTSFLDYAKRSATWAIYVWCRRTDDIVD
SPRAIVENTMDADLEQWSKRLDDVWEDRPWDSLDATLCDVRTRYPGMSIE
PYRDMIKGMVMDVPGLGQHRYATFEELYLYCYRVAGTVGLMTLPIMGTAP
GYSLKQATEPALALGIALQLTNILRDVGEDAMRGRIYLPLEDLARFSVTE
DQIMNKIMNSNYRELIKFQIARARVYFDRAEEGIPMLSPDARLPVRSSLD
MYREILNRIEDNDYDNFRHRAYVSKFEKLLILPLSWMKTLDWGRRR back to topmRNA from alignment at KK037249.1:505193..507903+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8650 ID=rna8650|Name=rna8650|organism=Nannochloropsis gaditana|type=mRNA|length=2711bp|location=Sequence derived from alignment at KK037249.1:505193..507903+ (Nannochloropsis gaditana)
GGCGGCTTGCAGACTCCGTGGCGAGCACCTCGGAATGTTTTTTTGCTTGC
ACTCGTTTCACATGCACGGGCGACAATGATGATTGAGCGGAAAGTAGGCG
GCATTGGACAGGAGGCAGCAAGCAACGTACGGAGGACCCTTAGGGCCGTC
CGAGGGCAACTTGCCGTAAAGAGAGCTAGTCTGGCGCGAGCCTCTTTGAA
TAGCATTTTGTCACTTTGGACCAAGCCATATTGCCTGTCTGACATTCTCC
GGTATCTATGTCATGTGGAACACCAATCAATTCTCTGATGATAGTGTCCT
GGTATCGTCTCCAACGtcggcctgccctccttgcacAGTATCCCTTTTTC
GTGTCCTGCCCAGCTCCCACCTCACACCTCCTATCCTTGTCCCAACACCA
TCAGGACAGGTATCTGGTTGCGCGCACGGGGTAAGGGAATCGATTGTGGA
TTGAGTCACACGGTGAGCACAGGAGTGAAGAAGGATTATGGGTGAGGTAA
CTCAGCACCAGCACaacgacggaggggaagcgacaagaagggggtggagc
cAAATGGACAGAAGGGACGTCAGAAGTTTGGCGCGGAGAAGGTATAGAAC
GGTAACAGCAGAAGCAGCTGTTGTTCCGGCAGCGGTGTCGAGTTTTCTCT
GGAGTacgacaagaagaagaagggatgcGAGCCGGGAGGAACGAGCGCAT
CAAGGGATTCGAGAGGGCACGCGTCCAAGATggcgtggaggggctggTAG
TAAAGCCAGAGAAGCATTGTCTGGCCATCTTATATTCGTAGGACTGCTAA
TGGTAGTGGCGGCGATGTCGTGGGCCCCCTTGCCGGCCACCGCCTTcatg
tcccctccctccgtgcccgccaTTCCAAGGACGCTGGCTACGAGGGTGAT
AGGCCGTCGGTACGTAGCCTCCAAAATCAGCGCAGGCGCTGGGATAAAGA
GCAGTTCCAAAGGAAATGGCATGAGCAGTAGCAGTGCAGGAAGCCCAGCG
GGCAATAGCCATCACAAGAACAACAAGCACCCCAACCACCACGCCCATAG
TCCGCACTCCCACACGGCAGCCGCGAGCCCCGCGGCCTTGCAGCCTCCGA
AGAGCCTGATGACGGCCAGCTCGCTGGGGAGTCAACAGGCCTCCGTCGAT
ACCAGTCGGAGCAAGAACACGATCACACGAGCCGTCGCCAGCACGGCAAG
CGCGGGTGGATACGTCCCAAATTCCATCGCACCGCCACAGCCTCAGGtct
cgcccccggccccgcaaGCGCCTCTAACGTCCGATGCGATTCCTCCAGAC
GTTCTCTGGGGTGAAAGCGGGCGTATGGCGTCTTCTGGATCGGTTGGAGG
CGTGGAACTgcccgtggacgaggagcatCGCgcggccctcctcgccgagg
CCTACGCCGAGTGCCAGCGGATCACCTCGATCTACGCCAAGACTTTCTAC
ATGGgaacctccttcctggacTATGCCAAACGCTCCGCGACCTGGGCGAT
CTACGTCTGGTGCCGGCGGACGGACGACATCGTGGACTCCCCCCGGGCCA
TCGTGGAGAACACGATGGACGCGGACCTGGAGCAGTGGAGCAAGCGGCTG
GACGACGTCTGGGAGGACAGGCCCTGGGACTCCCTCGACGCCACGCTCTG
CGACGTCCGCACCCGTTATCCGGGCATGAGCATCGAGCCCTACAGGGACA
TGATCAAGGGCATGGTCATGGACGTGCCGGGGCTGGGCCAGCACCGGTAC
GCGACCTTCGAGGAGCTCTACCTGTACTGCTACCGCGTGGCCGGGACCGT
GGGCCTGATGACGCTTCCGATCATGGGCACCGCGCCGGGATACTCCCTCA
AGCAGGCCACGGAgcccgccctggccttggGCATCGCCCTGCAGCTCACC
AACATCCTccgggacgtgggcgaggacgcgatGCGAGGCCGGATATACCT
CCCGCTCGAAGACCTGGCACGCTTCAGCGTGACGGAGGACCAAATAATGA
ACAAAATAATGAACTCCAACTACCGGGAGTTGATCAAGTTTCAGATCGCG
CGGGCCCGCGTCTATTTCGACAGAGCAGAGGAGGGCATCCCGATGCTCTC
TCCGGACGCCCGCTTGCCTGTCAGGTCGTCGCTGGACATGTACAGAGAGA
TTTTGAACCGCATCGAGGACAACGACTATGACAATTTTAGGCACCGAGCC
TATGTCTCCAAATTCGAAAAGCTTTTAATACTGCCCTTGTCGTGGATGAA
GACATTGGattggggaaggagacggtgaAGAGAGAGCGATTGACCGCCCA
GGTGTGggatatatatatatatttacTAGGCTAGCTGAGACCAGAAGATT
TCATTTGTATCCGCTCTTGCAGTCCTAAGCATAAAGGAATGTGGGCTCAA
ATTGCACAACTTCTGGCTCAGTGGTGGAATAGAGAGACTAGGGTAAGGCA
ACACGAAGGCTACAAGATGTTACCGTCGCAGCGTAACCACATTCTGGAGT
GGTGTGTTTCATGAACAAGAAATTTTTTAAAAGCGCGAAGTGACTCTTAG
GTGCCGCATGCCTTCAAAATCGCCAGGGTCGAACCATTGCAACACCATCC
GGTCCGTTTCAGATTGGCCGGCAGAAATATGGAAAGATGCGAAAAAGCAA
AACAGTCTGTGGAAAGACCTTTGGGGTAAAGAAGGATCATCAATGCCGGA
GTTAGTTTAGA back to topCoding sequence (CDS) from alignment at KK037249.1:505193..507903+ >rna8650 ID=rna8650|Name=rna8650|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at KK037249.1:505193..507903+ (Nannochloropsis gaditana)
ATGGGTGAGGTAACTCAGCACCAGCACaacgacggaggggaagcgacaag
aagggggtggagccAAATGGACAGAAGGGACGTCAGAAGTTTGGCGCGGA
GAAGGTATAGAACGGTAACAGCAGAAGCAGCTGTTGTTCCGGCAGCGGTG
TCGAGTTTTCTCTGGAGTacgacaagaagaagaagggatgcGAGCCGGGA
GGAACGAGCGCATCAAGGGATTCGAGAGGGCACGCGTCCAAGATggcgtg
gaggggctggTAGTAAAGCCAGAGAAGCATTGTCTGGCCATCTTATATTC
GTAGGACTGCTAATGGTAGTGGCGGCGATGTCGTGGGCCCCCTTGCCGGC
CACCGCCTTcatgtcccctccctccgtgcccgccaTTCCAAGGACGCTGG
CTACGAGGGTGATAGGCCGTCGGTACGTAGCCTCCAAAATCAGCGCAGGC
GCTGGGATAAAGAGCAGTTCCAAAGGAAATGGCATGAGCAGTAGCAGTGC
AGGAAGCCCAGCGGGCAATAGCCATCACAAGAACAACAAGCACCCCAACC
ACCACGCCCATAGTCCGCACTCCCACACGGCAGCCGCGAGCCCCGCGGCC
TTGCAGCCTCCGAAGAGCCTGATGACGGCCAGCTCGCTGGGGAGTCAACA
GGCCTCCGTCGATACCAGTCGGAGCAAGAACACGATCACACGAGCCGTCG
CCAGCACGGCAAGCGCGGGTGGATACGTCCCAAATTCCATCGCACCGCCA
CAGCCTCAGGtctcgcccccggccccgcaaGCGCCTCTAACGTCCGATGC
GATTCCTCCAGACGTTCTCTGGGGTGAAAGCGGGCGTATGGCGTCTTCTG
GATCGGTTGGAGGCGTGGAACTgcccgtggacgaggagcatCGCgcggcc
ctcctcgccgaggCCTACGCCGAGTGCCAGCGGATCACCTCGATCTACGC
CAAGACTTTCTACATGGgaacctccttcctggacTATGCCAAACGCTCCG
CGACCTGGGCGATCTACGTCTGGTGCCGGCGGACGGACGACATCGTGGAC
TCCCCCCGGGCCATCGTGGAGAACACGATGGACGCGGACCTGGAGCAGTG
GAGCAAGCGGCTGGACGACGTCTGGGAGGACAGGCCCTGGGACTCCCTCG
ACGCCACGCTCTGCGACGTCCGCACCCGTTATCCGGGCATGAGCATCGAG
CCCTACAGGGACATGATCAAGGGCATGGTCATGGACGTGCCGGGGCTGGG
CCAGCACCGGTACGCGACCTTCGAGGAGCTCTACCTGTACTGCTACCGCG
TGGCCGGGACCGTGGGCCTGATGACGCTTCCGATCATGGGCACCGCGCCG
GGATACTCCCTCAAGCAGGCCACGGAgcccgccctggccttggGCATCGC
CCTGCAGCTCACCAACATCCTccgggacgtgggcgaggacgcgatGCGAG
GCCGGATATACCTCCCGCTCGAAGACCTGGCACGCTTCAGCGTGACGGAG
GACCAAATAATGAACAAAATAATGAACTCCAACTACCGGGAGTTGATCAA
GTTTCAGATCGCGCGGGCCCGCGTCTATTTCGACAGAGCAGAGGAGGGCA
TCCCGATGCTCTCTCCGGACGCCCGCTTGCCTGTCAGGTCGTCGCTGGAC
ATGTACAGAGAGATTTTGAACCGCATCGAGGACAACGACTATGACAATTT
TAGGCACCGAGCCTATGTCTCCAAATTCGAAAAGCTTTTAATACTGCCCT
TGTCGTGGATGAAGACATTGGattggggaaggagacggtga back to top
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