rna8647, rna8647 (mRNA) Nannochloropsis gaditana

Overview
Namerna8647
Unique Namerna8647
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationKK037249.1:497481..498946 -

Link to JBrowse

Properties
Property NameValue
Productankyrin repeat-containing protein
Orig transcript idgnl|cribi|Naga_100052g11.1180.mrna
Orig protein idgnl|cribi|Naga_100052g11.1180
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:497481..498946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g11gene8382Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22055.1cds8620Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8647rna8647-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8647 ID=rna8647|Name=rna8647|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGGTCACTACGGGCAGATTCTCTGCATTCGCGTCAAGCGGGAATGTGCG
ACGGCTTCTTTCCACCCTCAGCTTCTTGCCTGTCGGCGTAGCAGTCAATG
AATTGATAGGCTCCTTCATGTTCGTCGATGGCCGGTCCATGCACCCAACT
TTGAACCCTGCGTATTCCGGCAGTTACACTTCTTCGAGAGATTTGGTATT
CGTAGCCAAATGGCCAATAAAAGTCTGGCGGCGGTACCGCAAGGGCGACG
TCGTGGTGCTGCGGAGTCCCGTCGATCCTGATGTGGAAGTTATCAGACGC
CTCACAGGCAGGGAGCGGGAATGGCGGACCCGCCGGGTCGGGATGCGCCA
AGAGCCTATTCCAGAAGGCTTCTGTTGGGTGACGGGGGATAACCCTCTGT
ACAGCGAGGACTCGGAGACGTACGGACCTGTCCCCTTGGCGCTGATAGAG
GGCTGGGTGGCGTACGTCGTCTGGCCGTTGAACCGCGTGGGACCTGTGCC
CAAACGAGTGATCCAGGCGCCACACGCGCAACGCATGCCGCCTCAGGATT
TGTAA
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protein sequence of rna8647

>rna8647-protein ID=rna8647-protein|Name=rna8647|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MLQAESEMEFQEWIKALRSSTESLLVTGAGGDRNTSYTSLSSAESGTSAA
GSTTESYSTFAGPMDAGRAAILSQATASFVARVREANPVCADCQRPEPDW
ASVSFGTVMCIECSGIHRSLGVHVSKVRSLLLDAWPRSLREVMEAMGNLR
ANQVWEARVPCDLEKPGVEAPREVREAWIRDKYVRKAFLGPSRRTEKEAD
GVKGQEEPNAVLYAAAIQGDLAKMGWALAHGADVNFANGKERRRTPVHAV
CQRGQSLAALAFLVLNGGAVDVVDDDDWSPLDLAMNGVPVAGGGACGIGG
AESSEAEGARRQLQLQQQNQLSITSSTAMPLVSYLLSKLELKGS
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mRNA from alignment at KK037249.1:497481..498946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8647 ID=rna8647|Name=rna8647|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at KK037249.1:497481..498946- (Nannochloropsis gaditana)
GTCAGCCCTCCCTTGACAGCCTCACGCCCGGGTCCTGCGCGGCTGCGACA
ATTGATGGAGGCCTTTGGTCCTCAGACGCACGGGGAGGCGCACATTGCTC
CTTTTCCTGCCTCAAACAGGGCTATTTGTGGAAACGAAGCAATAATGTGC
GGAAGGACTGGAAGCGTCGATTTTTTTATATTCGAAACGGAAAGCTGTCG
TACCAATGCGAGGATGACCCCATCGGACCCCCACGGGCAGAAATATGCGA
CCTGCTCATCTCCACCGTACGGGAGTGCTCCCGAGACACCGATACTCGCT
TTACTTTCGAGATACTTAGCCCCGGGAAACGTCCGTACATGCTGCAGGCA
GAGAGCGAAATGGAATTTCAAGAATGGATCAAGGCGCTTCGCAGCTCGAC
CGAGTCTTTGTTAGTGACGGGAGCCGGCGGGGATCGGAATACCTCCTACA
CGTCTCTATCCTCCGCCGAATCAGGCACCTCGGCCGCCGGGTCCACAACT
GAAAGCTACAGCACCTTCGCCGGACCGATGGACGCGGGCAGAGCGGCGAT
ACTCTCCCAGGCGACAGCCTCATTCGTTGCCCGAGTCCGCGAGGCCAATC
CGGTGTGCGCGGATTGCCAGCGGCCTGAGCCTGACTGGGCGAGCGTGAGT
TTCGGGACGGTCATGTGCATCGAGTGCTCCGGGATCCACCGCTCCCTCGG
TGTGCACGTGTCCAAGGTCCGGTCCCTTCTTCTCGACGCCTGGCCCCGCT
CCCTCCGCGAGGTCATGGAGGCCATGGGCAACCTGCGCGCAAACCAGGTG
TGGGAAGCCCGAGTACCTTGTGACCTGGAGAAACCCGGGGTAGAGGCTCC
GCGGGAGGTGCGAGAAGCGTGGATCCGGGACAAATACGTCAGGAAAGCCT
TCCTGGGTCCGTCCAGGCGGACCGAGAAGGAGGCGGATGGAGTGAAGGGG
CAGGAAGAGCCAAACGCAGTCCTGTACGCCGCCGCGATACAGGGAGACTT
GGCCAAAATGGGCTGGGCGTTGGCGCATGGCGCAGACGTGAATTTCGCGA
ATGGAAAAGAGCGGCGGCGGACCCCCGTGCACGCGGTATGTCAGAGGGGA
CAGAGCTTGGCGGCCCTGGCGTTTTTGGTCTTGAATGGAGGGGCCGTGGA
TGTGGTGGATGACGACGATTGGTCGCCTTTGGACCTCGCCATGAACGGGG
TTCCTGTCGCGGGAGGCGGCGCATGTGGTATAGGAGGGGCTGAGTCCTCG
GAAGCGGAGGGAGCGCGTAGACAGCTGCAACTCCAGCAGCAAAATCAATT
AAGCATCACTAGCTCGACAGCAATGCCCTTGGTGTCATATTTGCTGTCTA
AGCTCGAGCTGAAGGGGTCGTGAATGCATATAAAGGGGGAAGAACGGCGC
GAGTCGCCGCGCGAGCTTTTAATAGGAAGGCCTTACCACGGCAAAAAGTA
AATTGTACTTCTGTGA
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Coding sequence (CDS) from alignment at KK037249.1:497481..498946-

>rna8647 ID=rna8647|Name=rna8647|organism=Nannochloropsis gaditana|type=CDS|length=1035bp|location=Sequence derived from alignment at KK037249.1:497481..498946- (Nannochloropsis gaditana)
ATGCTGCAGGCAGAGAGCGAAATGGAATTTCAAGAATGGATCAAGGCGCT
TCGCAGCTCGACCGAGTCTTTGTTAGTGACGGGAGCCGGCGGGGATCGGA
ATACCTCCTACACGTCTCTATCCTCCGCCGAATCAGGCACCTCGGCCGCC
GGGTCCACAACTGAAAGCTACAGCACCTTCGCCGGACCGATGGACGCGGG
CAGAGCGGCGATACTCTCCCAGGCGACAGCCTCATTCGTTGCCCGAGTCC
GCGAGGCCAATCCGGTGTGCGCGGATTGCCAGCGGCCTGAGCCTGACTGG
GCGAGCGTGAGTTTCGGGACGGTCATGTGCATCGAGTGCTCCGGGATCCA
CCGCTCCCTCGGTGTGCACGTGTCCAAGGTCCGGTCCCTTCTTCTCGACG
CCTGGCCCCGCTCCCTCCGCGAGGTCATGGAGGCCATGGGCAACCTGCGC
GCAAACCAGGTGTGGGAAGCCCGAGTACCTTGTGACCTGGAGAAACCCGG
GGTAGAGGCTCCGCGGGAGGTGCGAGAAGCGTGGATCCGGGACAAATACG
TCAGGAAAGCCTTCCTGGGTCCGTCCAGGCGGACCGAGAAGGAGGCGGAT
GGAGTGAAGGGGCAGGAAGAGCCAAACGCAGTCCTGTACGCCGCCGCGAT
ACAGGGAGACTTGGCCAAAATGGGCTGGGCGTTGGCGCATGGCGCAGACG
TGAATTTCGCGAATGGAAAAGAGCGGCGGCGGACCCCCGTGCACGCGGTA
TGTCAGAGGGGACAGAGCTTGGCGGCCCTGGCGTTTTTGGTCTTGAATGG
AGGGGCCGTGGATGTGGTGGATGACGACGATTGGTCGCCTTTGGACCTCG
CCATGAACGGGGTTCCTGTCGCGGGAGGCGGCGCATGTGGTATAGGAGGG
GCTGAGTCCTCGGAAGCGGAGGGAGCGCGTAGACAGCTGCAACTCCAGCA
GCAAAATCAATTAAGCATCACTAGCTCGACAGCAATGCCCTTGGTGTCAT
ATTTGCTGTCTAAGCTCGAGCTGAAGGGGTCGTGA
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Synonyms
Publications