rna8646, rna8646 (mRNA) Nannochloropsis gaditana

Overview
Namerna8646
Unique Namerna8646
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1197
Alignment locationKK037249.1:496893..497447 +

Link to JBrowse

Properties
Property NameValue
ProductPeptidase S24/S26A/S26B/S26C, beta-ribbon domain protein
Orig transcript idgnl|cribi|Naga_100052g10.1165.mrna
Orig protein idgnl|cribi|Naga_100052g10.1165
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:496893..497447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g10gene8381Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8646rna8646-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22040.1cds8619Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8646 ID=rna8646|Name=rna8646|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGGTCCGTCGGCTCTTGCCTGCCATTGCAGTGTCTACTTCGACCGCGAA
AACGAGTCTTCGATCCGGACGAGTCTCCTCTTTCAGCGTGCGTTCCACAT
CAATTTTGTGCAGCTTGCAGGGCGGAATGATGCTTCGACGCATCAGCTCC
TGTGAGAACCTACGCAGGCGGCGACTAGCCCCTGGTCGGAGCTTCTTGTC
CAGCGAGCAACAAATTCGCGACTTCCACGTACCCCTGCCGTGGGATAAAC
GAAGAGAGGCTCGTGAGAAAGCCGAGCTCGACTGCATTACGAAGGCGGAA
GGCGTAATGAAAGCTTTGGATGGATCACTAGTGCTACCACCAGATTCTTC
CTTTTACAAATGGCTGGAGCACAATGGCAAAGACGTGGAAGGCGCGATGC
CAAAGAAGGAGGAATTTCAAAAATGGCTATCTGCGGCCGAGTCAGAGCTA
AATACACAGACTAAGGCGCAGGTTGGCATATTTTCGGGGGGGGAATGGTG
GAGAGCAGGTCACGATGACCACCTCCAGGCGATTCGGTCCCTACATTCTT
TGCAATTGCAGCACCTATGCGCAGAATTAAAGAAGAGCAAGGCTGTTTTC
ACGCCACATATTCCTGGCGACTATCTTGGAAAGGGGACGATGGCCAAGGT
TGTGGCTGTGCTTCAGGCACATTTAGATGGAGACCTTGAGACGCGATTAA
AAGCCGCGTGGATGCTGCAAGACGATAGCACGGAGAGCAAAGGCTGGCTC
TCCGAGCAGGGCATGGAGGACGCCGTCCACACTGTCCTAAACCCTGTTAT
CGCAACTGCTGCGACTTTGTACCCCTCATTGCCTGGCGTCAACAAAGCTC
AGAAGAAGGCATTCGTGAAGTTTATCAAGTCATATACTCGTGATCATACG
GATCTGCCATCTAAGCTTCGTTGTGTCTTCCATTGGACAGAGCCTCCACT
GGAAAGCCTTCCCACCAAACCTCCCGCTGTACCAGTTCCTAAAGTTATTG
ATCTGCCTGGCTACCTGAAGACACAGGAAGAGAATTTTCCCGACATGCAT
CAAGTCGGGAAAGGCTCCATGGAATTGTATAGACGGGTGCGAGAAGCTTA
CTACCACCAAAAAAAGGAGGATCGCGATACGTTTCGTACGGGTGCCGTGT
ATTTGATTGCCCTTGGCTTTGCCGACGTATACGTCAGCGGATTATGA
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protein sequence of rna8646

>rna8646-protein ID=rna8646-protein|Name=rna8646|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MVTTGRFSAFASSGNVRRLLSTLSFLPVGVAVNELIGSFMFVDGRSMHPT
LNPAYSGSYTSSRDLVFVAKWPIKVWRRYRKGDVVVLRSPVDPDVEVIRR
LTGREREWRTRRVGMRQEPIPEGFCWVTGDNPLYSEDSETYGPVPLALIE
GWVAYVVWPLNRVGPVPKRVIQAPHAQRMPPQDL
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mRNA from alignment at KK037249.1:496893..497447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8646 ID=rna8646|Name=rna8646|organism=Nannochloropsis gaditana|type=mRNA|length=555bp|location=Sequence derived from alignment at KK037249.1:496893..497447+ (Nannochloropsis gaditana)
ATGGTCACTACGGGCAGATTCTCTGCATTCGCGTCAAGCGGGAATGTGCG
ACGGCTTCTTTCCACCCTCAGCTTCTTGCCTGTCGGCGTAGCAGTCAATG
AATTGATAGGCTCCTTCATGTTCGTCGATGGCCGGTCCATGCACCCAACT
TTGAACCCTGCGTATTCCGGCAGTTACACTTCTTCGAGAGATTTGGTATT
CGTAGCCAAATGGCCAATAAAAGTCTGGCGGCGGTACCGCAAGGGCGACG
TCGTGGTGCTGCGGAGTCCCGTCGATCCTGATGTGGAAGTTATCAGACGC
CTCACAGGCAGGGAGCGGGAATGGCGGACCCGCCGGGTCGGGATGCGCCA
AGAGCCTATTCCAGAAGGCTTCTGTTGGGTGACGGGGGATAACCCTCTGT
ACAGCGAGGACTCGGAGACGTACGGACCTGTCCCCTTGGCGCTGATAGAG
GGCTGGGTGGCGTACGTCGTCTGGCCGTTGAACCGCGTGGGACCTGTGCC
CAAACGAGTGATCCAGGCGCCACACGCGCAACGCATGCCGCCTCAGGATT
TGTAA
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Coding sequence (CDS) from alignment at KK037249.1:496893..497447+

>rna8646 ID=rna8646|Name=rna8646|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at KK037249.1:496893..497447+ (Nannochloropsis gaditana)
ATGGTCACTACGGGCAGATTCTCTGCATTCGCGTCAAGCGGGAATGTGCG
ACGGCTTCTTTCCACCCTCAGCTTCTTGCCTGTCGGCGTAGCAGTCAATG
AATTGATAGGCTCCTTCATGTTCGTCGATGGCCGGTCCATGCACCCAACT
TTGAACCCTGCGTATTCCGGCAGTTACACTTCTTCGAGAGATTTGGTATT
CGTAGCCAAATGGCCAATAAAAGTCTGGCGGCGGTACCGCAAGGGCGACG
TCGTGGTGCTGCGGAGTCCCGTCGATCCTGATGTGGAAGTTATCAGACGC
CTCACAGGCAGGGAGCGGGAATGGCGGACCCGCCGGGTCGGGATGCGCCA
AGAGCCTATTCCAGAAGGCTTCTGTTGGGTGACGGGGGATAACCCTCTGT
ACAGCGAGGACTCGGAGACGTACGGACCTGTCCCCTTGGCGCTGATAGAG
GGCTGGGTGGCGTACGTCGTCTGGCCGTTGAACCGCGTGGGACCTGTGCC
CAAACGAGTGATCCAGGCGCCACACGCGCAACGCATGCCGCCTCAGGATT
TGTAA
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Synonyms
Publications