rna8643, rna8643 (mRNA) Nannochloropsis gaditana

Overview
Namerna8643
Unique Namerna8643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1300
Alignment locationKK037249.1:492055..493015 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100052g7.1152.mrna
Orig protein idgnl|cribi|Naga_100052g7.1152
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:492055..493015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g7gene8378Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8643rna8643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22027.1cds8616Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8643 ID=rna8643|Name=rna8643|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp
CAGACGGTTTAAGTAGAACCTCAGCACTGTACCCAATGCTCTCAGTCATT
ACTAATTGGGCATTTGTGATTAAGTATGACAGGTAGGTACACATGTTTCC
TGACTCTGGCTGCAGCTGCATCTCCACGATCATGATGATTGTACTTCAGT
AGCCGTGTGAGACCTCGACCTTGCCGCTCTCTGTCGTCAAATGAGGTCCA
TCACACGTCGCCCCAAAAAAAACTGCCTAACGATCAAGCGTATCCAACCA
TGCGACACATCATCCTGTACGAAACAGGTATTCCTGACTTTGGAGTTTGC
AGGCACTGTTGCATGTCCCCGGCATCTGTGTTAACCTCCCCACCAGCATC
GGAAGGGCTCGTGTCCGCCACCATCGATGCAAAACCCAGCCTCTTTCCAT
ACTCACAGTCCCGTGAAAGCCGCACTAGTCCACGTGAAGCAGCATTGTAA
AGGTGTAGACGCCTCCCATGATATTTGTCATATCGAGCGTGTCCTGGCAT
TAACAGATCGAATTGCCAGAGCACAGGGCCTAAACTCCTGTGAATTGGAA
ATGGCTTGGCTGTGTGCCGTTCTGCATGACGTCGGTGATCCCAAGTACAC
ATCCAACGGTGTAAAAGTTTTGAACGGCGTTTTGGATCAGCTTCAAGCAG
ATGGCCACATTACACCTGGTCAAGCGCAACGAATTCAAGCCGTGGTGCTG
CGGGTCAGCTTTCGCGAGGAGCTACCAGGTGGGATGTTCACTCCCGGGGA
CCTTCTCACATACCCGGAACTAGGCCCAGTTAAGGACGCCGACCAGTTGG
ATGCCATAGGAGCAATTGGAATCGCGAGGACTTTTGCTTTCGGAGGGGCA
CTGGGTCGCGAGATGTATTCATCGGAAATGGCGGCCTCGCACGGCGCTGG
CTTGGAAAATCGGAGAAGGCCTCTGCCTGCGTCAAAAATTGAATACCTTG
CCTCCTCGGCAGTATCAGTGGAAAACGGTCAAACCACAACGAAAGGCCAT
GACACTCTCACACATTTTCATGACAAGCTTTTGCACCTCGCCGCACGAAT
GAAGACGTCGGAGGGGCGGGCGCTGGCGAAAGCCCGCCACGCCTTCATGG
AGAGCTTCGTTGCCGAATTCGTCGAAGAGATTACGGGAAAAAGGTGACTG
GCTGCCCATCTTTGAAGCTTGTGTCAGCGTGTTCAGTCAAGGGTGGAAAA
CGCTTCCTGTGCACATGAAGGCTCAGAGGATGGTCCTTTCTGGACAGAGC
CGTCGGGAAACGGTTGGCGTTGAAAAAAGAAAAGCACATTGTGGTCCTCT
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protein sequence of rna8643

>rna8643-protein ID=rna8643-protein|Name=rna8643|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MIVEMQLQPESGNMCTYLSYLITNAQLVMTESIGYSAEVLLKPSGVLVRD
HRALSPETLLFFILLLTSLPSASEFSPPSPPLVASFSIRKPSQRITITSI
CSKLTPAFFEACKSLVAFPYDDGSICRLHLISTFGSTEKNATSTTMCVTV
GWGQKSQPAVVLRAQLDRLLPVVRSLGGAAFENLKQTRAWEDA
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mRNA from alignment at KK037249.1:492055..493015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8643 ID=rna8643|Name=rna8643|organism=Nannochloropsis gaditana|type=mRNA|length=961bp|location=Sequence derived from alignment at KK037249.1:492055..493015+ (Nannochloropsis gaditana)
ATGATCGTGGAGATGCAGCTGCAGCCAGAGTCAGGAAACATGTGTACCTA
CCTGTCATACTTAATCACAAATGCCCAATTAGTAATGACTGAGAGCATTG
GGTACAGTGCTGAGGTTCTACTTAAACCGTCTGGAGTACTCGTCAGGTAA
GTGAACACTTTTCTCACAAGTTTTTTtgggcctccctgccccctccttaa
GAGCTGTAGCACAAAGCGTTGATGATGCCCATATACATTGACATGTAAGC
ACTGGGTTATGAAAATATAACGTGATTACCAGGGACCATCGAGCCCTATC
TCCTGAAACGCTGCTATTTGTCAGGTGCCGTGCTTTTATCCTTCGGCGTT
CATATTCTGGTGCGCGCACATATCTGATACTCTCACTTCTATGCACTATA
TATTTATACATATATACACGTTGTGTCATCCTTGCTTAACCGTAACAGGA
TATATCTGCTTGTGGCAGTAGTTGTGACCTGTTTGGCCGGGTTCAGGAAT
TTGTAGTTTATCCTGCTGCTAACCTCGCTACCGTCCGCATCCGAGTTttc
accaccttctccgcctttgGTCGCCTCATTCTCAATCAGAAAGCCCAGTC
AGCGCATTACTATCACCAGCATATGCAGTAAGTTGACGCCTGCTTTTTTC
GAAGCATGCAAATCACTAGTTGCCTTCCCTTACGATGATGGCAGCATCTG
CCGGCTACACTTGATTTCAACTTTCGGATCGACCGAAAAAAATGGTACAT
GTATTTGTACCATTTGCGATGACCGGGCGATCCTGACGCATCCCTCCGAG
CCACGTCGACGACGATGTGTGTGACTGTGGGGTGGGGTCAGAAATCTCAG
CCTGCAGTAGTCTTGAGGGCGCAACTGGACCGGCTTTTGCCTGTCGTGCG
AAGCCTCGGAGGGGCAGCGTTCGAGAACCTGAAACAAACACGCGCGTGGG
AGGACGCCTGA
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Coding sequence (CDS) from alignment at KK037249.1:492055..493015+

>rna8643 ID=rna8643|Name=rna8643|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at KK037249.1:492055..493015+ (Nannochloropsis gaditana)
ATGATCGTGGAGATGCAGCTGCAGCCAGAGTCAGGAAACATGTGTACCTA
CCTGTCATACTTAATCACAAATGCCCAATTAGTAATGACTGAGAGCATTG
GGTACAGTGCTGAGGTTCTACTTAAACCGTCTGGAGTACTCGTCAGGGAC
CATCGAGCCCTATCTCCTGAAACGCTGCTATTTTTTATCCTGCTGCTAAC
CTCGCTACCGTCCGCATCCGAGTTttcaccaccttctccgcctttgGTCG
CCTCATTCTCAATCAGAAAGCCCAGTCAGCGCATTACTATCACCAGCATA
TGCAGTAAGTTGACGCCTGCTTTTTTCGAAGCATGCAAATCACTAGTTGC
CTTCCCTTACGATGATGGCAGCATCTGCCGGCTACACTTGATTTCAACTT
TCGGATCGACCGAAAAAAATGCCACGTCGACGACGATGTGTGTGACTGTG
GGGTGGGGTCAGAAATCTCAGCCTGCAGTAGTCTTGAGGGCGCAACTGGA
CCGGCTTTTGCCTGTCGTGCGAAGCCTCGGAGGGGCAGCGTTCGAGAACC
TGAAACAAACACGCGCGTGGGAGGACGCCTGAATGATCGTGGAGATGCAG
CTGCAGCCAGAGTCAGGAAACATGTGTACCTACCTGTCATACTTAATCAC
AAATGCCCAATTAGTAATGACTGAGAGCATTGGGTACAGTGCTGAGGTTC
TACTTAAACCGTCTGGAGTACTCGTCAGGGACCATCGAGCCCTATCTCCT
GAAACGCTGCTATTTTTTATCCTGCTGCTAACCTCGCTACCGTCCGCATC
CGAGTTttcaccaccttctccgcctttgGTCGCCTCATTCTCAATCAGAA
AGCCCAGTCAGCGCATTACTATCACCAGCATATGCAGTAAGTTGACGCCT
GCTTTTTTCGAAGCATGCAAATCACTAGTTGCCTTCCCTTACGATGATGG
CAGCATCTGCCGGCTACACTTGATTTCAACTTTCGGATCGACCGAAAAAA
ATGCCACGTCGACGACGATGTGTGTGACTGTGGGGTGGGGTCAGAAATCT
CAGCCTGCAGTAGTCTTGAGGGCGCAACTGGACCGGCTTTTGCCTGTCGT
GCGAAGCCTCGGAGGGGCAGCGTTCGAGAACCTGAAACAAACACGCGCGT
GGGAGGACGCCTGAATGATCGTGGAGATGCAGCTGCAGCCAGAGTCAGGA
AACATGTGTACCTACCTGTCATACTTAATCACAAATGCCCAATTAGTAAT
GACTGAGAGCATTGGGTACAGTGCTGAGGTTCTACTTAAACCGTCTGGAG
TACTCGTCAGGGACCATCGAGCCCTATCTCCTGAAACGCTGCTATTTTTT
ATCCTGCTGCTAACCTCGCTACCGTCCGCATCCGAGTTttcaccaccttc
tccgcctttgGTCGCCTCATTCTCAATCAGAAAGCCCAGTCAGCGCATTA
CTATCACCAGCATATGCAGTAAGTTGACGCCTGCTTTTTTCGAAGCATGC
AAATCACTAGTTGCCTTCCCTTACGATGATGGCAGCATCTGCCGGCTACA
CTTGATTTCAACTTTCGGATCGACCGAAAAAAATGCCACGTCGACGACGA
TGTGTGTGACTGTGGGGTGGGGTCAGAAATCTCAGCCTGCAGTAGTCTTG
AGGGCGCAACTGGACCGGCTTTTGCCTGTCGTGCGAAGCCTCGGAGGGGC
AGCGTTCGAGAACCTGAAACAAACACGCGCGTGGGAGGACGCCTGAATGA
TCGTGGAGATGCAGCTGCAGCCAGAGTCAGGAAACATGTGTACCTACCTG
TCATACTTAATCACAAATGCCCAATTAGTAATGACTGAGAGCATTGGGTA
CAGTGCTGAGGTTCTACTTAAACCGTCTGGAGTACTCGTCAGGGACCATC
GAGCCCTATCTCCTGAAACGCTGCTATTTTTTATCCTGCTGCTAACCTCG
CTACCGTCCGCATCCGAGTTttcaccaccttctccgcctttgGTCGCCTC
ATTCTCAATCAGAAAGCCCAGTCAGCGCATTACTATCACCAGCATATGCA
GTAAGTTGACGCCTGCTTTTTTCGAAGCATGCAAATCACTAGTTGCCTTC
CCTTACGATGATGGCAGCATCTGCCGGCTACACTTGATTTCAACTTTCGG
ATCGACCGAAAAAAATGCCACGTCGACGACGATGTGTGTGACTGTGGGGT
GGGGTCAGAAATCTCAGCCTGCAGTAGTCTTGAGGGCGCAACTGGACCGG
CTTTTGCCTGTCGTGCGAAGCCTCGGAGGGGCAGCGTTCGAGAACCTGAA
ACAAACACGCGCGTGGGAGGACGCCTGA
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Synonyms
Publications