rna8639, rna8639 (mRNA) Nannochloropsis gaditana

Overview
Namerna8639
Unique Namerna8639
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1017
Alignment locationKK037249.1:485361..486662 +

Link to JBrowse

Properties
Property NameValue
ProductUncharacterized protein family UPF0153
Orig transcript idgnl|cribi|Naga_100052g2.1174.mrna
Orig protein idgnl|cribi|Naga_100052g2.1174
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:485361..486662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g2gene8374Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8639rna8639-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22049.1cds8612Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8639 ID=rna8639|Name=rna8639|organism=Nannochloropsis gaditana|type=mRNA|length=1017bp
ATGAAGCTCGACGTGACTTGTATGCGGTACATGTCCAAGGATGATTTTAG
GGTTCTAACAGCGGTGGAAATGGGCATGAAAAATCACGACGTGGTTCCTG
TGGAGCTCCTTATTAAAATTGCCAAACTTCGGCATGGTGGCGTTCAGAAG
TTTTTAAGTACTCTGCTGCGATTCAAGCTCGTTTACCATGACAAGACGAC
TTACGATGGGTACCGTCTTACGTTCGGCGGCTACGATATACTGGCTCTTA
AGACGTTACTAGCCCGAGGACATATTTCGGGGGTCGGGCAAAAGGTGGGC
GTGGGGAAGGAGTCCGACATCTATGTGGCGCAGACGGAGGAGGGAGAGGA
GGTAATATTGAAGTTCCATCGGCTGGGCCGCGTCTCCTTTCGGGCCGTGA
AGAACAAGCGCGACTACCTGCAGCACCGCAAGTCCGCCTCCTGGCTCTAC
ATGTCCCGTCTTGCGGCCTTGCGGGAGTACGCCTTCATGAAAGCCCTGCA
CTCGAACGGCTTCCCTACCCCCACCCCCATCGACCAGAACCGGCACGTGG
TCCTCATGTCTCGGGTCAAGGGCTTCCCCATGTTCCAGGTCAAGCAAGGG
AACATGGCCGAGCCCGAACGGATCTTCCCGGTCTGCATGGACCTGATCGT
ACGGATGGCGCGGCGGGGGCTGGTCCACTGCGACTTCAATGAATTCAACC
TGATGGTGGATGAGGCGGGGGCGGTGACCCTCATTGACTTCCCTCAAATG
ATCAGCACCTCCCACGCGAACGCGCGCGAGATGTTCGAGCGGGACGTCCA
GTGCGTGGTCAAGTTCTTCGCGATGAAGATGCACTACGTACCTGGCGAGG
ACGAGGTGCCGGACTTCGAGATGGTCCTGAGGGAGGCGCGGGCGGCTAGG
GCGGGGCGGAGGAGGGAGGAGGAGGGGCGGGAAGGAGGGAAAGAGGGAGA
GGAGGATCGAGAATGGGGGGAAGCTGGAAGGAGAGGAGGGAGGAAAAGAG
GAGGACGAGGACGATGA
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protein sequence of rna8639

>rna8639-protein ID=rna8639-protein|Name=rna8639|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MKITSVAAVLVTMGPAAVHSFPLSFRPVSSFSGPALPPVTRQCLAREGRR
RPFDGPQPLRSGTSSHSAEEREASSRDDVDSRATPVPKPKPFISRRVRRG
PIGAATSGIDGASKSSRQVNGSTAIHNKSVTPTSTPAVLKVSKKWACVAN
CGACCYLAPSERPYLLDYFDDPKDLAAYNSMVGDDGWCIHYDKAARACTV
FEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGTTSGEML
SFNMAIKHLKASAGDARSERSKGAGGFGKGARAVDEAVGEPVAPIVPIDP
FTNEASDKEAAMADWIGS
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mRNA from alignment at KK037249.1:485361..486662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8639 ID=rna8639|Name=rna8639|organism=Nannochloropsis gaditana|type=mRNA|length=1302bp|location=Sequence derived from alignment at KK037249.1:485361..486662+ (Nannochloropsis gaditana)
AGACAAATTTCCTAGAATCACGTTTGAAAATGAAATATGCGTCGCCACTT
TTAATCCTCAGCAGTAAAAGGGGCAGTAAATATTacgctttcccctcgcc
cagcaGACAGAAGCGGAAGGGCCTCGCCTCGATCCCTCCACGCCTTAAAA
TGTGTAATTTCGGATTCATTATCCCTCAAACATACTGACAGATACTCACG
TGCACGGAAGATAAATGAAAATTACATCTGTTGCGGCCGTCCTTGTGACA
ATGGGTCCGGCTGCGGTCCATTCGTTTCCTTTGTCTTTTCGTCCCGTCAG
CTCTTTCTCAGGTCCGGCCCTACCACCAGTCACACGGCAATGTCTAGCAA
GAGAGGGGCGTCGGCGGCCTTTTGACGGGCCCCAGCCGCTGCGTTCAGGA
ACATCATCCCATAGCGccgaagaaagagaagccTCCTCACGTGATGACGT
TGATTCTCGCGCGACTCCTGTGCCAAAACCGAAACCCTTCATAAGCCGTC
GCGTGCGCCGCGGGCCCATCGGCGCTGCAACTTCAGGCATTGATGGTGCT
TCGAAATCATCGCGACAAGTAAACGGTAGCACCGCAATACACAACAAATC
AGTGACGCCTACGTCTACTCCTGCCGTCCTCAAAGTGAGTAAAAAATGGG
CGTGCGTGGCCAATTGTGGAGCATGCTGTTACCTTGCCCCTTCCGAGCGC
CCCTACCTCCTTGACTACTTCGACGATCCAAAGGACCTAGCAGCATACAA
CAGCATGGTGGGAGATGACGGATGGTGTATTCATTACGACAAAGCGGCGC
GGGCGTGCACTGTGTTCGAAGATCGGCCCTGGTTCTGTCGCGTGGAGGGC
AAGACGTTCGAGAAGATGTACGGAGTGACGGGGTCGGAAATGGACAAATT
TTGCACGTCTTGTTGTCGGGAGCAGATCGCAGACGTCTACGGCACAACAA
GTGGTGAAATGCTTTCGTTCAACATGGCGATAAAGCACTTGAAAGCTTCG
GCTGGCGACGCCAGAAGCGAGAGGAGTAAGGGGGCGGGTGGCTTTGGCAA
GGGCGCAAGAGcagtggacgaggccgtggGGGAGCCTGTAGCCCCTATTG
TGCCCATCGACCCGTTCACAAACGAAGCTTCAGACAAGGAAGCAGCCATG
GCGGATTGGATCGGATCGTGACAGGATGACGGGTGAGGTAATGGAGAAAT
GAATCAAATCGTCGACAGGCTTAAAATATAAATATAAATATATAAATTTT
ATACTTATTTTATGCTTATAAATTGAAAAGTTTAACAATGCTTAGTATTT
GA
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Coding sequence (CDS) from alignment at KK037249.1:485361..486662+

>rna8639 ID=rna8639|Name=rna8639|organism=Nannochloropsis gaditana|type=CDS|length=957bp|location=Sequence derived from alignment at KK037249.1:485361..486662+ (Nannochloropsis gaditana)
ATGAAAATTACATCTGTTGCGGCCGTCCTTGTGACAATGGGTCCGGCTGC
GGTCCATTCGTTTCCTTTGTCTTTTCGTCCCGTCAGCTCTTTCTCAGGTC
CGGCCCTACCACCAGTCACACGGCAATGTCTAGCAAGAGAGGGGCGTCGG
CGGCCTTTTGACGGGCCCCAGCCGCTGCGTTCAGGAACATCATCCCATAG
CGccgaagaaagagaagccTCCTCACGTGATGACGTTGATTCTCGCGCGA
CTCCTGTGCCAAAACCGAAACCCTTCATAAGCCGTCGCGTGCGCCGCGGG
CCCATCGGCGCTGCAACTTCAGGCATTGATGGTGCTTCGAAATCATCGCG
ACAAGTAAACGGTAGCACCGCAATACACAACAAATCAGTGACGCCTACGT
CTACTCCTGCCGTCCTCAAAGTGAGTAAAAAATGGGCGTGCGTGGCCAAT
TGTGGAGCATGCTGTTACCTTGCCCCTTCCGAGCGCCCCTACCTCCTTGA
CTACTTCGACGATCCAAAGGACCTAGCAGCATACAACAGCATGGTGGGAG
ATGACGGATGGTGTATTCATTACGACAAAGCGGCGCGGGCGTGCACTGTG
TTCGAAGATCGGCCCTGGTTCTGTCGCGTGGAGGGCAAGACGTTCGAGAA
GATGTACGGAGTGACGGGGTCGGAAATGGACAAATTTTGCACGTCTTGTT
GTCGGGAGCAGATCGCAGACGTCTACGGCACAACAAGTGGTGAAATGCTT
TCGTTCAACATGGCGATAAAGCACTTGAAAGCTTCGGCTGGCGACGCCAG
AAGCGAGAGGAGTAAGGGGGCGGGTGGCTTTGGCAAGGGCGCAAGAGcag
tggacgaggccgtggGGGAGCCTGTAGCCCCTATTGTGCCCATCGACCCG
TTCACAAACGAAGCTTCAGACAAGGAAGCAGCCATGGCGGATTGGATCGG
ATCGTGA
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Synonyms
Publications