rna8633, rna8633 (mRNA) Nannochloropsis gaditana

Overview
Namerna8633
Unique Namerna8633
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1047
Alignment locationKK037249.1:473025..474755 +

Link to JBrowse

Properties
Property NameValue
Productribosomal pseudouridine
Orig transcript idgnl|cribi|Naga_100244g6.1328.mrna
Orig protein idgnl|cribi|Naga_100244g6.1328
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:473025..474755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100244g6gene8368Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8633rna8633-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22063.1cds8606Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8633 ID=rna8633|Name=rna8633|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
ATGTTTTCCCCGTCTTTCAAGTCCAGGTCGTGTTCTCGTCCTTACGCAAT
TGTCAAAGCTCTTCCGGCTCGTTTATCTCAAGCCATGAAGATCATTTATT
CCATGGCCGCTTTGCTGCTTGCTGCGGCTCCAGCTAGGGCCGGCCTCAGC
CTTTCGGTGAGACTTCCGGAGATCAAATGCTCCCTCGCGACGCATATGCA
TGAATTGTCCTTCTTGATTGTGTCAGGCGCTTCCGTAAAACGAACAGATG
TTCATCATCTTCTGTCTGTCATAAAGCCAGCCAGCATGCTGTCAACAGTA
GTGTGTTTCAATTTACCCGTCACCCTGCAGGTGACAGCCACGGACACGAC
CGTGAAAGACCTGTCCACCCTGAATCTCGAGGGCGCTGTAGAGACCTTAT
TGGCCGACGACGTTGTGGTGGGCGGCACCTACAATTACAATGCTGCGGTG
GCTAAGCCTGAGGAGGTATACATCAAGAAGGCCTTCGACGTGAAGCTGGG
CGACCTGGCCCTGGACGCGCGCTACCGTCTCCCCACCCAAGTGGCGGCCC
TGACCGCCACTTTGAGGCGCAACGCCGACTACATCCGCGCGGCTTTCAAC
ACGGACTCCGTGGTGGAGCGTGTGGAAGGCTCCAAGAGATTCAGCCTGCC
TGGCGAGCGCCAGTTGGCCCTGACCCCGGCGTGGGACCAAAGCACCAGGG
CCTTCGAGCTCACGGTGGCCCAGGACATCCAGGCGGGCAAGACGAACGCG
GTCCTCGAGCTTTCTCAGGCTGACAAGGACGGGAAGCTCACGCTCAACCA
CCAGGTGGACGACGCCAACACCATCTCCCCCACCCTCAGCCTTAAGCGGG
GCTATCTTACCTACCAGTGGACGCACCTCCTCGGTGACGGTGCCAAGCTG
CAGACCACTCTGGACCCGTTCACGGACCTTGATGTCACCTGGTCAGACCC
CGGGAAAGGCGGGGAGTGGGTGACACGCGCCAACATCCCCCTCAAGGAGC
CCAGGACGGCCACGCTTTCCTTCAAGCGCAAGTTCACATTCCAATAA
back to top

protein sequence of rna8633

>rna8633-protein ID=rna8633-protein|Name=rna8633|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQN
GEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSL
QDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLH
EIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYT
FRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRL
DVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYM
PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQD
GGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMTS
FLLEDEKDPAIQALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRR
KGVNREGGCPDVESDRQGLRESKEVK
back to top

mRNA from alignment at KK037249.1:473025..474755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8633 ID=rna8633|Name=rna8633|organism=Nannochloropsis gaditana|type=mRNA|length=1731bp|location=Sequence derived from alignment at KK037249.1:473025..474755+ (Nannochloropsis gaditana)
ATGCAGGATCGGGCGGCTCGGGGCCCCGTCAtttttcttgtcctcctcgc
attCCAGCTCATCTCCACCGTCACCGGGCTCAGATCCTGTGCAGGCATGC
GAGCCCGGGTCTTGCCGGGATTCATATTTCGACTTCACAACAACCAGAAT
GGGGAATTCTCTGCAATTTTGACACTCCCATACCGGAGATGGGGACCTTC
ATTGCGCTCTTGTATTAATGTTCCTTATCAACGGGGCTCGACTGCATCGA
CCGTCTCCACTCCAGGTACCACCCAACCTGCTCCTAGACCAAAGAGCCTA
CAGGACCTACGGGAAATTGCTTCGTTTTTCCCGGGTACTCCAAAAGACAA
CAGTACTGCCTTTTTCCACGCCTCTTGCGAATTTGCCACCGTCCCAGAGG
CAGTCGCTACGGCCTTGCATATGTCCCATGATCGCGCAGCAAAGCTTCAC
GAGATCGGAGCTGTTTATATCTACAGGCAGAATAAATTTCGGCGCACTCA
CTTGATAGAGAAGTATCCACCTTCAACGGTTTTGGAAGGAGACCTCTTTC
GGGTCTACTTATTCCCACGCCGTTTCCCGGAATGCATGATTGACTATACC
TTCCGGGTAATATGGGAGAACGACGACCTGCTTCTGGTGGACAAGCCTCC
TGGCTGTCCCTGTTCCTTGCACGTCTCAAATGCACTCGAAGCATTGGACG
TGGCAGCCTCGGCAAGTTTGGGCCTTAACCTTATCCGGTGGGTTAACACA
GAGAAGCACGGTGCTATTTTCCTTAATTGATCGGTGGTGCGTCTTTTGCA
AGTCCAGAAAAGCGCTGATATTCGTCCCCATTTTCCTCGCACAGTATGAA
TCGCCTTGATGTCGTCACTTCCGGGCTCGTGCCTCTGGCCAAGACCGCGC
AGGGTGCCACTCGTTTTTGGGAGGAGATACGCCGCGACCGGCTAGGCAAG
AGGTACAAAGCCCTCCTGACGGGCCCCGTCCCCGTGGGTCTCCTCGAGCA
CTACATGCCAGGTGGGTCTTCTTGGCTAGCATTATGTTCTCGACTGACCA
TCCTGGAGACAGACGAGTCGCCCttaccaccctctccccacGTCGCCGCC
CCTCTCGTCCCCTAGGGAAAATCATCCACCGccggcccgccccccgcgcC
ATCAGCCGGCGGCCTCTGCCGGGCTGGAAGCTCTGTCAGACCCGCGTCTT
GTCCTGCCAACCCGTCGCTTTCTCAGAGTTGAACTTGGTCGCTATCCACG
ATGGTCAAGATGGCGGCTCTGGCGGCGAGAAGGACCTGCCGCCCTCTCTT
TACGAGGTCGAGGCCGAGCTTGTCACTGGCAGGACCCACCAACTTCGCGC
AGTTTTCGCTGCGGAAGGCAGCCCCATCTGGCAAGACAGTATGTATGCCC
CAATGACTTCCTTCCTAttggaggatgaaaaggacCCGGCCATCCAAGCC
CTCTACCCCCTGTGCATGGAGCCCCGAGCCTCCACAGGCATCGCCTTGCA
GTGCGCGAGGTTGTCATTCTGGGAACAGACTGTGCATGCGGGGGCGCCAT
GGTGGCGCAGAAAGGGGGTGAACAGAGAAGGGGGCTGTCCAGACGTCGAA
AGTGACAGGCAAGGCTTGCGAGAGTCAAAAGAAGTAAAATAGACAGGCGT
AAACGAAAAAGCTGTCACCCGGCACGCGTTTCCTTTTTGTGCCCCAGAAA
ACTGGATTCGATCATCTTTACATTGCACTTT
back to top

Coding sequence (CDS) from alignment at KK037249.1:473025..474755+

>rna8633 ID=rna8633|Name=rna8633|organism=Nannochloropsis gaditana|type=CDS|length=4293bp|location=Sequence derived from alignment at KK037249.1:473025..474755+ (Nannochloropsis gaditana)
ATGCAGGATCGGGCGGCTCGGGGCCCCGTCAtttttcttgtcctcctcgc
attCCAGCTCATCTCCACCGTCACCGGGCTCAGATCCTGTGCAGGCATGC
GAGCCCGGGTCTTGCCGGGATTCATATTTCGACTTCACAACAACCAGAAT
GGGGAATTCTCTGCAATTTTGACACTCCCATACCGGAGATGGGGACCTTC
ATTGCGCTCTTGTATTAATGTTCCTTATCAACGGGGCTCGACTGCATCGA
CCGTCTCCACTCCAGGTACCACCCAACCTGCTCCTAGACCAAAGAGCCTA
CAGGACCTACGGGAAATTGCTTCGTTTTTCCCGGGTACTCCAAAAGACAA
CAGTACTGCCTTTTTCCACGCCTCTTGCGAATTTGCCACCGTCCCAGAGG
CAGTCGCTACGGCCTTGCATATGTCCCATGATCGCGCAGCAAAGCTTCAC
GAGATCGGAGCTGTTTATATCTACAGGCAGAATAAATTTCGGCGCACTCA
CTTGATAGAGAAGTATCCACCTTCAACGGTTTTGGAAGGAGACCTCTTTC
GGGTCTACTTATTCCCACGCCGTTTCCCGGAATGCATGATTGACTATACC
TTCCGGGTAATATGGGAGAACGACGACCTGCTTCTGGTGGACAAGCCTCC
TGGCTGTCCCTGTTCCTTGCACGTCTCAAATGCACTCGAAGCATTGGACG
TGGCAGCCTCGGCAAGTTTGGGCCTTAACCTTATCCGTATGAATCGCCTT
GATGTCGTCACTTCCGGGCTCGTGCCTCTGGCCAAGACCGCGCAGGGTGC
CACTCGTTTTTGGGAGGAGATACGCCGCGACCGGCTAGGCAAGAGGTACA
AAGCCCTCCTGACGGGCCCCGTCCCCGTGGGTCTCCTCGAGCACTACATG
CCAGGGAAAATCATCCACCGccggcccgccccccgcgcCATCAGCCGGCG
GCCTCTGCCGGGCTGGAAGCTCTGTCAGACCCGCGTCTTGTCCTGCCAAC
CCGTCGCTTTCTCAGAGTTGAACTTGGTCGCTATCCACGATGGTCAAGAT
GGCGGCTCTGGCGGCGAGAAGGACCTGCCGCCCTCTCTTTACGAGGTCGA
GGCCGAGCTTGTCACTGGCAGGACCCACCAACTTCGCGCAGTTTTCGCTG
CGGAAGGCAGCCCCATCTGGCAAGACAGTATGTATGCCCCAATGACTTCC
TTCCTAttggaggatgaaaaggacCCGGCCATCCAAGCCCTCTACCCCCT
GTGCATGGAGCCCCGAGCCTCCACAGGCATCGCCTTGCAGTGCGCGAGGT
TGTCATTCTGGGAACAGACTGTGCATGCGGGGGCGCCATGGTGGCGCAGA
AAGGGGGTGAACAGAGAAGGGGGCTGTCCAGACGTCGAAAGTGACAGGCA
AGGCTTGCGAGAGTCAAAAGAAGTAAAATAGATGCAGGATCGGGCGGCTC
GGGGCCCCGTCAtttttcttgtcctcctcgcattCCAGCTCATCTCCACC
GTCACCGGGCTCAGATCCTGTGCAGGCATGCGAGCCCGGGTCTTGCCGGG
ATTCATATTTCGACTTCACAACAACCAGAATGGGGAATTCTCTGCAATTT
TGACACTCCCATACCGGAGATGGGGACCTTCATTGCGCTCTTGTATTAAT
GTTCCTTATCAACGGGGCTCGACTGCATCGACCGTCTCCACTCCAGGTAC
CACCCAACCTGCTCCTAGACCAAAGAGCCTACAGGACCTACGGGAAATTG
CTTCGTTTTTCCCGGGTACTCCAAAAGACAACAGTACTGCCTTTTTCCAC
GCCTCTTGCGAATTTGCCACCGTCCCAGAGGCAGTCGCTACGGCCTTGCA
TATGTCCCATGATCGCGCAGCAAAGCTTCACGAGATCGGAGCTGTTTATA
TCTACAGGCAGAATAAATTTCGGCGCACTCACTTGATAGAGAAGTATCCA
CCTTCAACGGTTTTGGAAGGAGACCTCTTTCGGGTCTACTTATTCCCACG
CCGTTTCCCGGAATGCATGATTGACTATACCTTCCGGGTAATATGGGAGA
ACGACGACCTGCTTCTGGTGGACAAGCCTCCTGGCTGTCCCTGTTCCTTG
CACGTCTCAAATGCACTCGAAGCATTGGACGTGGCAGCCTCGGCAAGTTT
GGGCCTTAACCTTATCCGTATGAATCGCCTTGATGTCGTCACTTCCGGGC
TCGTGCCTCTGGCCAAGACCGCGCAGGGTGCCACTCGTTTTTGGGAGGAG
ATACGCCGCGACCGGCTAGGCAAGAGGTACAAAGCCCTCCTGACGGGCCC
CGTCCCCGTGGGTCTCCTCGAGCACTACATGCCAGGGAAAATCATCCACC
GccggcccgccccccgcgcCATCAGCCGGCGGCCTCTGCCGGGCTGGAAG
CTCTGTCAGACCCGCGTCTTGTCCTGCCAACCCGTCGCTTTCTCAGAGTT
GAACTTGGTCGCTATCCACGATGGTCAAGATGGCGGCTCTGGCGGCGAGA
AGGACCTGCCGCCCTCTCTTTACGAGGTCGAGGCCGAGCTTGTCACTGGC
AGGACCCACCAACTTCGCGCAGTTTTCGCTGCGGAAGGCAGCCCCATCTG
GCAAGACAGTATGTATGCCCCAATGACTTCCTTCCTAttggaggatgaaa
aggacCCGGCCATCCAAGCCCTCTACCCCCTGTGCATGGAGCCCCGAGCC
TCCACAGGCATCGCCTTGCAGTGCGCGAGGTTGTCATTCTGGGAACAGAC
TGTGCATGCGGGGGCGCCATGGTGGCGCAGAAAGGGGGTGAACAGAGAAG
GGGGCTGTCCAGACGTCGAAAGTGACAGGCAAGGCTTGCGAGAGTCAAAA
GAAGTAAAATAGATGCAGGATCGGGCGGCTCGGGGCCCCGTCAtttttct
tgtcctcctcgcattCCAGCTCATCTCCACCGTCACCGGGCTCAGATCCT
GTGCAGGCATGCGAGCCCGGGTCTTGCCGGGATTCATATTTCGACTTCAC
AACAACCAGAATGGGGAATTCTCTGCAATTTTGACACTCCCATACCGGAG
ATGGGGACCTTCATTGCGCTCTTGTATTAATGTTCCTTATCAACGGGGCT
CGACTGCATCGACCGTCTCCACTCCAGGTACCACCCAACCTGCTCCTAGA
CCAAAGAGCCTACAGGACCTACGGGAAATTGCTTCGTTTTTCCCGGGTAC
TCCAAAAGACAACAGTACTGCCTTTTTCCACGCCTCTTGCGAATTTGCCA
CCGTCCCAGAGGCAGTCGCTACGGCCTTGCATATGTCCCATGATCGCGCA
GCAAAGCTTCACGAGATCGGAGCTGTTTATATCTACAGGCAGAATAAATT
TCGGCGCACTCACTTGATAGAGAAGTATCCACCTTCAACGGTTTTGGAAG
GAGACCTCTTTCGGGTCTACTTATTCCCACGCCGTTTCCCGGAATGCATG
ATTGACTATACCTTCCGGGTAATATGGGAGAACGACGACCTGCTTCTGGT
GGACAAGCCTCCTGGCTGTCCCTGTTCCTTGCACGTCTCAAATGCACTCG
AAGCATTGGACGTGGCAGCCTCGGCAAGTTTGGGCCTTAACCTTATCCGT
ATGAATCGCCTTGATGTCGTCACTTCCGGGCTCGTGCCTCTGGCCAAGAC
CGCGCAGGGTGCCACTCGTTTTTGGGAGGAGATACGCCGCGACCGGCTAG
GCAAGAGGTACAAAGCCCTCCTGACGGGCCCCGTCCCCGTGGGTCTCCTC
GAGCACTACATGCCAGGGAAAATCATCCACCGccggcccgccccccgcgc
CATCAGCCGGCGGCCTCTGCCGGGCTGGAAGCTCTGTCAGACCCGCGTCT
TGTCCTGCCAACCCGTCGCTTTCTCAGAGTTGAACTTGGTCGCTATCCAC
GATGGTCAAGATGGCGGCTCTGGCGGCGAGAAGGACCTGCCGCCCTCTCT
TTACGAGGTCGAGGCCGAGCTTGTCACTGGCAGGACCCACCAACTTCGCG
CAGTTTTCGCTGCGGAAGGCAGCCCCATCTGGCAAGACAGTATGTATGCC
CCAATGACTTCCTTCCTAttggaggatgaaaaggacCCGGCCATCCAAGC
CCTCTACCCCCTGTGCATGGAGCCCCGAGCCTCCACAGGCATCGCCTTGC
AGTGCGCGAGGTTGTCATTCTGGGAACAGACTGTGCATGCGGGGGCGCCA
TGGTGGCGCAGAAAGGGGGTGAACAGAGAAGGGGGCTGTCCAGACGTCGA
AAGTGACAGGCAAGGCTTGCGAGAGTCAAAAGAAGTAAAATAG
back to top
Synonyms
Publications