EWM22063.1, cds8606 (CDS) Nannochloropsis gaditana

Overview
NameEWM22063.1
Unique Namecds8606
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:473025..473761 +
Alignment locationKK037249.1:473869..474035 +
Alignment locationKK037249.1:474140..474666 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22063.1
Productribosomal pseudouridine
Orig transcript idgnl|cribi|Naga_100244g6.1328.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:473025..473761 +
KK037249.1supercontigKK037249.1:473869..474035 +
KK037249.1supercontigKK037249.1:474140..474666 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|585102479|gb|EWM22063.1| (ribosomal pseudouridine [Nannochloropsis gaditana])

HSP 1 Score: 982.63 bits (2539), Expect = 0.000e+0
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0
Query:    1 MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMTSFLLEDEKDPAIQALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRRKGVNREGGCPDVESDRQGLRESKEVK 476
            MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMTSFLLEDEKDPAIQALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRRKGVNREGGCPDVESDRQGLRESKEVK
Sbjct:    1 MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMTSFLLEDEKDPAIQALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRRKGVNREGGCPDVESDRQGLRESKEVK 476          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|553186107|ref|XP_005854362.1| (ribosomal pseudouridine [Nannochloropsis gaditana CCMP526] >gi|422294702|gb|EKU22002.1| ribosomal pseudouridine [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query:    1 MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAEL 370
            MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAEL
Sbjct:    1 MQDRAARGPVIFLVLLAFQLISTVTGLRSCAGMRARVLPGFIFRLHNNQNGEFSAILTLPYRRWGPSLRSCINVPYQRGSTASTVSTPGTTQPAPRPKSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAEL 370          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|901821208|gb|KMZ73083.1| (RNA pseudouridine synthase 6, chloroplastic [Zostera marina])

HSP 1 Score: 156.762 bits (395), Expect = 6.592e-39
Identity = 106/316 (33.54%), Postives = 159/316 (50.32%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRP---APRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPM------------------TSFLLEDEKDPAI-QALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRR 450
            Q  FR T + E     +V  G   RV++ P+RFP C  ID+  RV+  ++  +++DKP G        N  E+     S +LGL   L   +++D  T G V LAKT    + F + IR  ++ K Y AL   PVP G+L HYM       RP   AP+ +S+  + GW LC+  VLSC+ + + +  +   +  +D G  G K +    YE E +L+TG+THQ+RA  AA G+PI  DSMY P                   T F  ED++  A+   L     EP  + G  LQ + +S++++  +A  PWW++
Sbjct:  165 QKTFRITQVDE-----SVEAGMYLRVHVHPKRFPRCYEIDWKSRVLSVDELYVVLDKPAGISVGGTTDNIEESCVTFTSRALGLTVPLKTTHQIDNCTDGCVVLAKTKDFCSTFHKLIREKKVKKMYLALTAAPVPTGILSHYM-------RPVNFAPKIVSKDCISGWHLCELEVLSCKEIPWPDAEVEEKYHIEDCGWDGSKKVA---YECEIDLLTGKTHQIRAQLAAIGAPIIGDSMYMPAVIAERENPCLNPFGQGKKTEFSNEDDRTKAVGNWLSKYGKEPHVAIG--LQASLISWFDRVYYARTPWWKQ 463          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|659067778|ref|XP_008441255.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 156.377 bits (394), Expect = 1.167e-38
Identity = 109/317 (34.38%), Postives = 161/317 (50.79%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAIQALYPL-CMEPRASTGIALQCARLSFWEQTVH---AGAPWWRRK 451
            Q  FR TH+ E      V  G   RV++ P+RFP C  ID+  R+I   +  +++DKP G        N  E+    A+ +LGL   L   +++D  T G V LA+T +  + F  +IR  R+ K Y AL   PVP+G++ HYM P  I     APR +S+  + GW LCQ  VL C+ V++ ++++ A +  +DGG   +K      YE +  L+TGRTHQ+RA  A  G+P+  DSMY P                    +  E++K+ A+     L   EP  +  I LQ   +S W+   H   AG PWWR++
Sbjct:  179 QKTFRITHVDE-----FVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHYLALSAAPVPMGIITHYMRPINI-----APRLVSKDCIDGWILCQLEVLECREVSWPDVDIEAKYCFEDGGWPSKK----KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEP--AVAIGLQAYEIS-WDSREHIYNAGTPWWRQE 478          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|659067792|ref|XP_008441314.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 154.836 bits (390), Expect = 1.473e-38
Identity = 109/317 (34.38%), Postives = 161/317 (50.79%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAIQALYPL-CMEPRASTGIALQCARLSFW---EQTVHAGAPWWRRK 451
            Q  FR TH+ E      V  G   RV++ P+RFP C  ID+  R+I   +  +++DKP G        N  E+    A+ +LGL   L   +++D  T G V LA+T +  + F  +IR  R+ K Y AL   PVP+G++ HYM P  I     APR +S+  + GW LCQ  VL C+ V++ ++++ A +  +DGG   +K      YE +  L+TGRTHQ+RA  A  G+P+  DSMY P                    +  E++K+ A+     L   EP  +  I LQ   +S W   E   +AG PWWR++
Sbjct:  129 QKTFRITHVDE-----FVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHYLALSAAPVPMGIITHYMRPINI-----APRLVSKDCIDGWILCQLEVLECREVSWPDVDIEAKYCFEDGGWPSKK----KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEP--AVAIGLQAYEIS-WDSREHIYNAGTPWWRQE 428          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|778658464|ref|XP_011652781.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Cucumis sativus] >gi|778658467|ref|XP_011652785.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Cucumis sativus] >gi|778658470|ref|XP_011652787.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Cucumis sativus] >gi|700209443|gb|KGN64539.1| hypothetical protein Csa_1G063630 [Cucumis sativus])

HSP 1 Score: 152.525 bits (384), Expect = 2.789e-37
Identity = 104/316 (32.91%), Postives = 159/316 (50.32%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAIQALYPL-CMEPRASTGIALQCARLSF--WEQTVHAGAPWWRRK 451
            Q  FR TH+ E      V  G   RVY+ P+RFP C  +D+  R+I   D  +++DKP G       +N  E     A+ +LGL   L   +++D  T G V LA+T +  + F  +IR  ++ K Y AL+  P+P G++ HYM P  +     APR +SR  + GW LCQ  VL C+ V++ + ++ A +  +D G   +K      +E +  L+TGRTHQ+RA  A  G+P+  DS+Y P                    +  E++K+ A+     L   EP  +  I LQ   +S+   E   +AG PWWR++
Sbjct:  174 QKTFRITHIDE-----FVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIMTHYMRPNNL-----APRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKK----KAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKENAVAEWIALHGKEP--AVAIGLQAYEISWDSGEHIYNAGTPWWRQE 473          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|985433608|ref|XP_015382493.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Citrus sinensis] >gi|985433610|ref|XP_015382494.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Citrus sinensis])

HSP 1 Score: 149.058 bits (375), Expect = 3.404e-37
Identity = 109/316 (34.49%), Postives = 158/316 (50.00%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAP-----------------MTSFLLEDEKDPA-IQALYPLCMEPRASTGIALQCARLSF--WEQTVHAGAPWWRRK 451
            Q  FR TH+ +      V  G   RV++ P+RFP C  ID+  R+I   +  +++DKP G        N  E+    AS +LGL   L   +++D  T G V LA+T +  + F  +IR  ++ K Y AL T P+PVG++ HYM P  I     APR +S   + GW LCQ  V+ C+ V + +  +   +  +D G    +D     YE + +L+TGRTHQ+RA  AA G+PI  DSMY P                    +  +D+K+ A I+ +    MEP  S  I LQ   +S+   E    A +PWWR K
Sbjct:   28 QKTFRITHVDQ-----IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI-----APRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG-WPSRDYA---YECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEP--SVAIGLQACHISWDDGECCYEARSPWWRCK 327          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|659067780|ref|XP_008441263.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo] >gi|659067782|ref|XP_008441272.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo] >gi|659067786|ref|XP_008441288.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo] >gi|659067788|ref|XP_008441297.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 150.984 bits (380), Expect = 8.262e-37
Identity = 107/319 (33.54%), Postives = 158/319 (49.53%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRP---APRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAIQALYPL-CMEPRASTGIALQCARLSFWEQTVH---AGAPWWRRK 451
            Q  FR TH+ E      V  G   RVY+ P+RFP C  ID+  R+I   D  +++DKP G       +N  E     A+ +LGL   L   +++D  T G V LA+T +  + F  +IR  ++ K Y AL   P+P G++ HYM       RP   APR +SR  + GW LCQ  VL C+ V++ + ++ A +  +D G   +K      +E +  L+TGRTHQ+RA  A  G+P+  DS+Y P                    +  E++K+ A+     L   EP  +  I LQ   +S W+   H   AG PWWR++
Sbjct:  174 QKTFRITHIDE-----FVEVGTYLRVYVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALAAVPLPKGIMTHYM-------RPINLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKK----KAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKENAVAEWIALHGKEP--AVAIGLQAYEIS-WDSGKHIYNAGTPWWRQE 473          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|659067796|ref|XP_008441331.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 149.443 bits (376), Expect = 8.839e-37
Identity = 107/319 (33.54%), Postives = 158/319 (49.53%), Query Frame = 0
Query:  160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRP---APRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAIQALYPL-CMEPRASTGIALQCARLSFWEQTVH---AGAPWWRRK 451
            Q  FR TH+ E      V  G   RVY+ P+RFP C  ID+  R+I   D  +++DKP G       +N  E     A+ +LGL   L   +++D  T G V LA+T +  + F  +IR  ++ K Y AL   P+P G++ HYM       RP   APR +SR  + GW LCQ  VL C+ V++ + ++ A +  +D G   +K      +E +  L+TGRTHQ+RA  A  G+P+  DS+Y P                    +  E++K+ A+     L   EP  +  I LQ   +S W+   H   AG PWWR++
Sbjct:   97 QKTFRITHIDE-----FVEVGTYLRVYVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALAAVPLPKGIMTHYM-------RPINLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKK----KAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKENAVAEWIALHGKEP--AVAIGLQAYEIS-WDSGKHIYNAGTPWWRQE 396          
BLAST of EWM22063.1 vs. NCBI_GenBank
Match: gi|695053693|ref|XP_009414950.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Musa acuminata subsp. malaccensis])

HSP 1 Score: 150.984 bits (380), Expect = 9.056e-37
Identity = 107/300 (35.67%), Postives = 148/300 (49.33%), Query Frame = 0
Query:  177 VLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRP---APRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQDGGSGGEKDLPPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMT-----------------SFLLEDEKDPAI-QALYPLCMEPRASTGIALQCARLSFWEQ---TVHAGAPWWR 449
            V  G   RV++ P+RFP C  ID+  R+I      +++DKP        + N  E   + AS +L  +  L   +++D  T G V LA+T    + F   IR  R+ K Y AL   PVPVG++ HYM       RP   APR +S   + GW LCQ  VL C+ V +    ++  H+ +D G   +K      YE +  L+TG+THQ+RA FAA G+PI  DSMY P                    +  EDEK  AI Q +     EP A+ G  LQ + +S W+    +  AGAPWWR
Sbjct:  197 VEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTSTYVVLDKPAATSVGGTIDNIEECCAMFASRALAFDTPLRTTHQIDNCTEGCVVLARTKDFCSEFHGMIREKRVKKLYLALAAAPVPVGIITHYM-------RPVNTAPRLVSEDIIGGWHLCQLEVLECKEVMWPAAKVMETHNVEDCGWPFKK----VAYECKINLLTGKTHQIRAQFAAIGAPIVGDSMYIPSVMAKTANPSINPFDRKWKEYATEDEKMAAIEQWIAQHGKEPYAAIG--LQASHIS-WDDGNCSYEAGAPWWR 482          
The following BLAST results are available for this feature:
BLAST of EWM22063.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102479|gb|EWM22063.1|0.000e+0100.00ribosomal pseudouridine [Nannochloropsis gaditana][more]
gi|553186107|ref|XP_005854362.1|0.000e+0100.00ribosomal pseudouridine [Nannochloropsis gaditana ... [more]
gi|901821208|gb|KMZ73083.1|6.592e-3933.54RNA pseudouridine synthase 6, chloroplastic [Zoste... [more]
gi|659067778|ref|XP_008441255.1|1.167e-3834.38PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|659067792|ref|XP_008441314.1|1.473e-3834.38PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|778658464|ref|XP_011652781.1|2.789e-3732.91PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|985433608|ref|XP_015382493.1|3.404e-3734.49PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|659067780|ref|XP_008441263.1|8.262e-3733.54PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|659067796|ref|XP_008441331.1|8.839e-3733.54PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
gi|695053693|ref|XP_009414950.1|9.056e-3735.67PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8633rna8633Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications