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Properties
| Property Name | Value |
|---|
| Product | ubiquitin carboxyl-terminal hydrolase 36 |
| Orig transcript id | gnl|cribi|Naga_100244g2.1333.mrna |
| Orig protein id | gnl|cribi|Naga_100244g2.1333 |
| Gene | Ubp16 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:463431..466852 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8630 ID=rna8630|Name=rna8630|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp
GCCGTCATCGGCGGGGGGGTCATCTCCGTCGAGTACGCCACTGTCTTCGC
CGCCATGGGCCTTCCCACCTCCCTTCTCTGCCGCGAGGAGGCCTTCCTCC
CCTTCCTACCCACGGAGCTCCAGACCGCCATCAAGGCGGACATGGCCCGC
AACGGGATCGAGGTCATTCATAACCCGGTCAGTCGGTTCGAGGTGGGCGA
GGACAAGATGGTGCGCTTTGAGTTCGAGGGGCTCCGGGGCGGGGAGGGCG
GCCCAGTGGAGGAAGACGACGGGGGCCGGCGGCAGTTGGAGGTGGGCCTG
GTCCTCTACAGCGGCGGGAGGGATGCGAACAGCGAGAAGATCGGGTGCGA
GGAGGTGGGGGTGGAGGTGGGGAAGTACGGGCGGATCGTGGTGGACAAGG
ACTTCAGGACGGGGAATCCGCGCGTATTCGCCATCGGGGACGTGATCGGC
CCCCCTGGACTGGCCTCCTTCGCGCAACAGTCGGCGCGAGTGGTGACCGA
CTTGCTTTTCCGGGAGGAGCGGGAAGGGAGGGGGAGGGGTGGGGGGGAGA
AGGGGGAGGGCAGGCGGGGGGGCTTGATGGGCCAAGCCGAGGTGACGCTG
GAGGACTGGGCGGGGGGGGACGATTTCTTCGCCGCCCCGGATGCGAATGC
CGAAGAGGAGGAAGAGAAAGAGAGGGAGAGGAGCCTTGCGCTCTTGAAGC
GGATGGAGGCCCCCTTGACCCTCTGGACGGTCCCGGAGATAGCCAGCAGC
GGGATGTCGACCGAGGAGGCCCTGGCCCGAGGAGAGAGGCTGGCGGAGAC
GGAGGAGCAGGGCGGGGGTATCGTCTTCGGCTACGCATTCTTCAAGGACC
TGGCGCGAGGCCGTCTCTCAGGCGATTTGAACGGATTCTTGAAGATTATC
GCCAGGGCGGAGGGAGGCAGCGGGCAAAAGATGCGGCACACGATCATCGG
CGTGCACATCGTGGGGGACGGAGCCAACGAGCTGATTCAGCTGGGGTCCA
TGCTCGTTCACTCCCACAGCACCTTAGAGGAGCTCAGCAACATGCCCTTC
GCGGCCGTCACCTTGAGCTGCCTGTACCAGGTCGCCTCCGATGACGCCCT
GTGTCGAAGCCCCTTCAGCAGCATGCGGAAGCCGGCGGATGTCGCGGTCG
GAGTGGGAGAGAGGACGGGCGCAGGGAGAGTGCGAACAGGGGCGGGAGCG
GACTGAGAAGGCCCCGCCGGGAAAGGCTCGCGAGAAAGTGTGACATGCGG
GGGGGAGGGTTGCATGGCCCGACGCCCGTAACGCGAGAGAGCAAGTGACA
ATAGTTGAGCTACGCATTCAGTAATGGAGGAAGCCCTCCTTCCTGTAAGG
GAGCGGGGTTGAAAGGGCAGTGATGGCACCTGAGGGTGGCTTGGGAAGCT
TTAGACATTCTTTTAGGAACGACAGGGAAAAAGCATGATTGTGAATATGT
TAAGATGCCGGATGATCTAATGCGATGGATGGAGAAGGAGTCTGTAGGGC
CCCTTAGATCGGTGATTTACCATGTTCCTCTTAGACGAACAGAATGAGAC
CAAATGGAACAAATGATTTTCCTTTTTTGCATCAAGAGAGTGTGGTGATT
CTTATTTCTT back to topprotein sequence of rna8630 >rna8630-protein ID=rna8630-protein|Name=rna8630|organism=Nannochloropsis gaditana|type=polypeptide|length=1023bp
MKHRGQQGGLKGGRGTGDVQSFKRLLQGPGNDGAHNGQAWDIGKPRRRIK
FHKARKVENGFVSLSTGTTKGPCPASGCLGGVVAGPLTGKKARERFSEAM
DKDAAAPGLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNAT
LQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRGGGQARGGWLGLVR
DLIANMHTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVG
RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRS
QVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRW
RCPACSQLVCAQKRLSFHTAPNVCTVQLKRFMFGSRSSKLSKNVAYPESL
RLSLSGPEGSARYRLAGVLVHAGASVNMGHYYSLVKAANGCWYEMDDAQV
RQVGLPTVLHQHAYLLFYVKVGPSPPPALDRRGRDEEEKEGEKRLAKTSP
GPDTATTSNGSGQGRRAATPGWSEVLGKLREEDAGNEDHTEGLEGGEGAD
TAWAQPEGLALFMARAKREAGEGGGPEGGQGNGRNGGADGEEDVGVRPLP
APTNAAPVREEGSAPHTGTGPAHSLAPPHSTPEDHVVVSAEGRPPPSTPP
SASSTSSSSTGTSAFLPALDVGPVVMSYSYAGKFFLTRFSRRRWHRTFSP
WRRHRPGEEEGRAEGLSLEGRAEGLSLEGAMEKAGGTRRSRRLAGMGQGG
KADDEGGGMGEEERGGGRGSSTGVVDGMLERKGEDAGDSELVASTAALSE
ASGLPPALSLSSLPVEGKEKRRPREAGLRVLRREEEGVVLVPRGVRACEK
GGRRALDVRALEALRDAPLGAMGTWDGWGRVLCDGVPPRFLTPLVLGSVR
FTLYRALILTRFFCILCGQWGSGRMWSLTSKGGQERLLTLRQPATGFWCR
RNVRKETRRRKESLANSLPLPLRDVRREFGVLAASRIGMRTRGGANPTLS
TCASKSYRSSLDSLIPYKEMVLA back to topmRNA from alignment at KK037249.1:463431..466852+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8630 ID=rna8630|Name=rna8630|organism=Nannochloropsis gaditana|type=mRNA|length=3422bp|location=Sequence derived from alignment at KK037249.1:463431..466852+ (Nannochloropsis gaditana)
AAACAGGCATTTTCTCGGAATTTTGTACAATTAGGTTCTCTGTTCTCAAA
GTAGTATTCCTGTTGCAAACGACCTTGCGACTCAAATCAAGCCGCTTTAT
TTCCTCCACATCTATTTGCATTTACAGGTCTCGAGGGAGAAATGATCAAC
GGTCTCTCATTTCGGTGTTCTCGCTGAGTAAACAAGGCAGGTGTGTTAGG
TCAGGCGGGCAGGATAGAGCCGTCAAACATGAAGCATCGAGGTCAACAGG
GCGGTTTGAAAGGTGGTCGGGGAACGGGGGATGTGCAGAGTTTCAAAAGG
TTGCTCCAAGGTCCCGGAAATGACGGCGCCCACAACGGTCAAGCGTGGGA
TATCGGCAAGCCGCGGCGGAGAATCAAATTTCACAAGGCCCGCAAAGTCG
AGAACGGCTTCGTTTCTTTGTCAACTGGCACGACCAAAGGCCCGTGCCCT
GCGTCGGGCTGCTTGGGAGGCGTCGTTGCCGGCCCCCtgacaggaaagaa
ggccCGAGAGCGTTTCAGTGAGGCCATGGACAAGGATGCTGCAGCGCCTG
GCTTGCCAACGCCGGAGAAAGGCATCTTCCCGGAATCAAAGATTCATCCC
CTGATGACCTGGATCCGCGTGGAGCGTGTGGGTCCGGGCCTCTACAACCT
GGGGAACACTTGCTTTCTGAACGCCACCTTACAGTGCTTGGCGTACCTGC
CCCCGCTCGCGCAGTACTTTCTgagcaaaaaggaggaggaaagggtgccg
TCCGTGCTCTCCCCTGGGGCCGGGCAGGGACATCGCggagggggccaggc
ccgggggggctggcTGGGCCTTGTGCGGGACTTGATCGCCAACATGCACA
CGGGCtcaggggccggaggcggggatCGGGGCGACGGCCTGgcccggcgg
gagggcggccggAGCCCGATCTCACCCAAGGCGATCGTCGGGAACCTGAA
GGCCCTGAACCGGCATTTCCGGGTCGGTCGGCAGGAAGACGCGCACGAGT
TCCTCCGTCACCTGCTGGACGCGCTTCAGAGCGGTTGCCTCCAAGCCGCC
AGGGTCAAGAGCAACGCCCCAGGCCGGCTGGCGGAGACCACCTTCGTGCA
CCGGATCTTCGGGGGCTATTTGCGCTCTCAGGTCCGCTGCACCCAGTGCG
GGCATTGCAGCAACACCTACGACAATTTCCTGGACCTGTCGTTGGAGATC
CACGGGAAGGTGGGTCGGCTCGAGGAGGCGCTCGCCCGCTTTACGGCCGT
GGAGACCTTGGACCGAGCAAACCGATGGAGGTGCCCCGCCTGCAGCCAGC
TCGTCTGCGCCCAGAAGCGGCTCAGCTTCCACACCGCCCCCAACGTGTGC
ACGGTGCAGCTCAAGCGCTTCATGTTCGGATCTCGCAGCAGCAAGCTGAG
CAAGAACGTGGCCTACCCAGAGAGCCTGCGCCTGAGCCTGTCCGGGCCCG
AGGGCTCGGCCCGCTACCGGCTGGCGggggtcctcgtccacgccggCGCC
TCCGTGAACATGGGCCACTACTACTCCCTGGTCAAGGCGGCCAACGGCTG
TTGGTACGAGATGGACGATGCCCAGGTCCGGCAGGTGGGCCTGCCCACGG
TCTTGCACCAGCACGCCTATCTCCTCTTCTACGTGAAGGTggggccatcg
ccgccccccGCGCTGGACAGGCGGGGtcgcgacgaggaggagaaggaggg
cgagaaacgACTGGCGAAAACCTCCCCAGGACCGGACACGGCGACAACCA
GCAACGGCAGCGGTCAAGGCCGGCGCGCGGCCACGCCGGGCTGGAGCGAG
GTGTTGGggaaattgcgcgaagaggacgcgggcAACGAGGACCACACGGA
GGGGCtagagggcggagagggcgcaGACACGGCTTGGGCACAGCCCGAAG
GCTTGGCACTCTTCATGGCgcgggcgaagagggaggcgggggagggggga
gggccggagggagggcagggcaaTGGGCGGAATGGCGGGGccgacgggga
agaagacgtgggAGTGCGGCCACTACCCGCGCCGACCAATGCAGCCCCTg
tccgggaggaagggagtgccCCGCACACGGGGACCGGTCCTGCTCACTCC
TTGGCGCCGCCACACTCCACTCCCGAGGACCACGTCGTAGTGAGCGCCGA
gggccgtccccctccttccacccccccttccgcctcctccacctcctcct
cctccaccggcacctCGGCgttccttcctgccctggACGTGGGGCCCGTT
GTCATGAGCTACTCGTACGCGGGCAAGTTCTTTCTCACCCGGTTCTCTCG
GCGACGATGGCACCGGACCTTCTCCCCCTGGCGCAGGCACCGAcccggag
aagaggaggggcgggcggaggggttGAGtctggaggggcgggcggagggg
ttGAGTCTGGAGggggcgatggagaaggcaggagggacgcggaggagcag
gaggctggcggggatgggacaggggggaaaggccgaTGACGAGGGtgggg
gaatgggggaggaggagaggggtgggggcagggGTTCTTCAACTGGTGTC
GTGGATGGAATGCttgagaggaaaggcgaaGATGCGGGCGATTCTGAGCT
CGTGGCCTCTACAGCCGCGCTCTCCGAGGCCTCTGGTCTCCCCCcggcct
tgtccttgtcctccttgcccgtcgagggaaaggagaagaggcggccgagg
gaggcaggcttAAGGGTCCTtcgccgggaggaggagggcgtggtgcTGGT
GCCGCGGGGCGTTAGGGCAtgcgagaaaggagggaggagggcgcttGACG
TCAGGGCTTTGGAGGCATTGAGGGACGCGCCCCTGGGGGCTATGGGTACG
TGGGATGGCTGGGGAAGGGTTCTTTGTGACGGGGTACCGCCACGTTTTCT
TACGCCACTCGTATTGGGGTCTGTCAGATTCACGCTTTATCGTGCGCTCA
TTCTCACACGCTTCTTCTGCATACTCTGCGGACAGTGGGGCAgtgggagg
atgtggagTCTCAcgagcaagggggggcaggagaggttGCTTACGCTCAG
GCAGCCCGCGACAGGGTTTTGGTGCAGGCGGAACGTACGGAAAgagacga
gaaggagaaaagaaagcttAGCGAAttcgctgccgctgccattGCGGGAC
GTAAGAAGAGAGTTCGGGGTGCTCGCGGCGTCTCGAATagggatgaggac
gagagggggggcaaaCCCAACCCTTTCGACCTGCGCCAGCAAGAGCTACA
GAAGCAGCCTAGACAGCTTAATTCCTTACAAGGAAATGGTGTTGGCATGA
ATGGACGCCATGTTTGCAGCCGTGTGCGGGGGAAGCCAGCACAAATGGGA
AACAAAAAGTAAAAAAATCGTCTGAGACTTCAACAATAGTTCTTGCAAAT
TGCCCGCACCTCCACAAGGTCC back to topCoding sequence (CDS) from alignment at KK037249.1:463431..466852+ >rna8630 ID=rna8630|Name=rna8630|organism=Nannochloropsis gaditana|type=CDS|length=3072bp|location=Sequence derived from alignment at KK037249.1:463431..466852+ (Nannochloropsis gaditana)
ATGAAGCATCGAGGTCAACAGGGCGGTTTGAAAGGTGGTCGGGGAACGGG
GGATGTGCAGAGTTTCAAAAGGTTGCTCCAAGGTCCCGGAAATGACGGCG
CCCACAACGGTCAAGCGTGGGATATCGGCAAGCCGCGGCGGAGAATCAAA
TTTCACAAGGCCCGCAAAGTCGAGAACGGCTTCGTTTCTTTGTCAACTGG
CACGACCAAAGGCCCGTGCCCTGCGTCGGGCTGCTTGGGAGGCGTCGTTG
CCGGCCCCCtgacaggaaagaaggccCGAGAGCGTTTCAGTGAGGCCATG
GACAAGGATGCTGCAGCGCCTGGCTTGCCAACGCCGGAGAAAGGCATCTT
CCCGGAATCAAAGATTCATCCCCTGATGACCTGGATCCGCGTGGAGCGTG
TGGGTCCGGGCCTCTACAACCTGGGGAACACTTGCTTTCTGAACGCCACC
TTACAGTGCTTGGCGTACCTGCCCCCGCTCGCGCAGTACTTTCTgagcaa
aaaggaggaggaaagggtgccgTCCGTGCTCTCCCCTGGGGCCGGGCAGG
GACATCGCggagggggccaggcccgggggggctggcTGGGCCTTGTGCGG
GACTTGATCGCCAACATGCACACGGGCtcaggggccggaggcggggatCG
GGGCGACGGCCTGgcccggcgggagggcggccggAGCCCGATCTCACCCA
AGGCGATCGTCGGGAACCTGAAGGCCCTGAACCGGCATTTCCGGGTCGGT
CGGCAGGAAGACGCGCACGAGTTCCTCCGTCACCTGCTGGACGCGCTTCA
GAGCGGTTGCCTCCAAGCCGCCAGGGTCAAGAGCAACGCCCCAGGCCGGC
TGGCGGAGACCACCTTCGTGCACCGGATCTTCGGGGGCTATTTGCGCTCT
CAGGTCCGCTGCACCCAGTGCGGGCATTGCAGCAACACCTACGACAATTT
CCTGGACCTGTCGTTGGAGATCCACGGGAAGGTGGGTCGGCTCGAGGAGG
CGCTCGCCCGCTTTACGGCCGTGGAGACCTTGGACCGAGCAAACCGATGG
AGGTGCCCCGCCTGCAGCCAGCTCGTCTGCGCCCAGAAGCGGCTCAGCTT
CCACACCGCCCCCAACGTGTGCACGGTGCAGCTCAAGCGCTTCATGTTCG
GATCTCGCAGCAGCAAGCTGAGCAAGAACGTGGCCTACCCAGAGAGCCTG
CGCCTGAGCCTGTCCGGGCCCGAGGGCTCGGCCCGCTACCGGCTGGCGgg
ggtcctcgtccacgccggCGCCTCCGTGAACATGGGCCACTACTACTCCC
TGGTCAAGGCGGCCAACGGCTGTTGGTACGAGATGGACGATGCCCAGGTC
CGGCAGGTGGGCCTGCCCACGGTCTTGCACCAGCACGCCTATCTCCTCTT
CTACGTGAAGGTggggccatcgccgccccccGCGCTGGACAGGCGGGGtc
gcgacgaggaggagaaggagggcgagaaacgACTGGCGAAAACCTCCCCA
GGACCGGACACGGCGACAACCAGCAACGGCAGCGGTCAAGGCCGGCGCGC
GGCCACGCCGGGCTGGAGCGAGGTGTTGGggaaattgcgcgaagaggacg
cgggcAACGAGGACCACACGGAGGGGCtagagggcggagagggcgcaGAC
ACGGCTTGGGCACAGCCCGAAGGCTTGGCACTCTTCATGGCgcgggcgaa
gagggaggcgggggaggggggagggccggagggagggcagggcaaTGGGC
GGAATGGCGGGGccgacggggaagaagacgtgggAGTGCGGCCACTACCC
GCGCCGACCAATGCAGCCCCTgtccgggaggaagggagtgccCCGCACAC
GGGGACCGGTCCTGCTCACTCCTTGGCGCCGCCACACTCCACTCCCGAGG
ACCACGTCGTAGTGAGCGCCGAgggccgtccccctccttccaccccccct
tccgcctcctccacctcctcctcctccaccggcacctCGGCgttccttcc
tgccctggACGTGGGGCCCGTTGTCATGAGCTACTCGTACGCGGGCAAGT
TCTTTCTCACCCGGTTCTCTCGGCGACGATGGCACCGGACCTTCTCCCCC
TGGCGCAGGCACCGAcccggagaagaggaggggcgggcggaggggttGAG
tctggaggggcgggcggaggggttGAGTCTGGAGggggcgatggagaagg
caggagggacgcggaggagcaggaggctggcggggatgggacagggggga
aaggccgaTGACGAGGGtgggggaatgggggaggaggagaggggtggggg
cagggGTTCTTCAACTGGTGTCGTGGATGGAATGCttgagaggaaaggcg
aaGATGCGGGCGATTCTGAGCTCGTGGCCTCTACAGCCGCGCTCTCCGAG
GCCTCTGGTCTCCCCCcggccttgtccttgtcctccttgcccgtcgaggg
aaaggagaagaggcggccgagggaggcaggcttAAGGGTCCTtcgccggg
aggaggagggcgtggtgcTGGTGCCGCGGGGCGTTAGGGCAtgcgagaaa
ggagggaggagggcgcttGACGTCAGGGCTTTGGAGGCATTGAGGGACGC
GCCCCTGGGGGCTATGGGTACGTGGGATGGCTGGGGAAGGGTTCTTTGTG
ACGGGGTACCGCCACGTTTTCTTACGCCACTCGTATTGGGGTCTGTCAGA
TTCACGCTTTATCGTGCGCTCATTCTCACACGCTTCTTCTGCATACTCTG
CGGACAGTGGGGCAgtgggaggatgtggagTCTCAcgagcaagggggggc
aggagaggttGCTTACGCTCAGGCAGCCCGCGACAGGGTTTTGGTGCAGG
CGGAACGTACGGAAAgagacgagaaggagaaaagaaagcttAGCGAAttc
gctgccgctgccattGCGGGACGTAAGAAGAGAGTTCGGGGTGCTCGCGG
CGTCTCGAATagggatgaggacgagagggggggcaaaCCCAACCCTTTCG
ACCTGCGCCAGCAAGAGCTACAGAAGCAGCCTAGACAGCTTAATTCCTTA
CAAGGAAATGGTGTTGGCATGA back to top
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