rna8628, rna8628 (mRNA) Nannochloropsis gaditana

Overview
Namerna8628
Unique Namerna8628
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2082
Alignment locationKK037249.1:459780..460650 +

Link to JBrowse

Properties
Property NameValue
Productsoluble pyridine nucleotide transhydrogenase
Orig transcript idgnl|cribi|Naga_100039g1.4433.mrna
Orig protein idgnl|cribi|Naga_100039g1.4433
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:459780..460650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g1gene8363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8628rna8628-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22095.1cds8601Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8628 ID=rna8628|Name=rna8628|organism=Nannochloropsis gaditana|type=mRNA|length=2082bp
CCTCGCACACTCATCAGGTCAGAGGCCTCGTAGCCGAACTTGCCTCGAGA
TGCTCGCAACCATGTTTCTCCGCCGTGGAAGCAACACACTGGCGCTTGGT
CGTCGCATGCCAATACTCAGGAGCATCACCTCGGAGACCAAGTCCTGGGC
CACCTCCCTGAACGAACCCCTGAAGACGACAGACCCAGACTTGCATGCCA
TCATTGAGCAAGAGAAAGTACGACAGCGGGAGTCTCTGGTCCTCATCGCC
TCGGAGAATTTCACGTCTAAGTCCGTCTTCGACGCACTCGGCTCCGTCAT
GTCCAACAAGTACTCGGAGGGCTACCCTGGCGCCCGCTACTACGGCGGGA
ACGAGAACATCGACAAGGTTGAGTCCCTGTGCCAGCAGCGGGCCCTGGCC
GCCTTCAATCTGGACCCGGCTCGGTGGGGCGTGAACGTGCAGACCCTCTC
CGGGTCGCCCGCAAACTTCCAGGCCTACACGGCGGTCCTGGCGCCGCACG
ACCGGATCATGGCTCTGGACCTTCCCCACGGGGGCCACCTCTCGCACGGC
TACCAGACGGACTCGAAGAAGATCTCCGCGGTCTCCATCTTCTTCGAGAC
CTTCCCCTACCGCCTCGACGAGCGCACGGGCCGGATCGACTACGACAAGA
TGGAGGAGAACGCCGCGCTCTTCCGGCCCAAGCTGCTGGTGGCGGGGGCC
TCGGCCTACGCGCGGACCATCGACTACGAGAGGATGAGGAAGATCGCGGA
CAAGCACAATGCCTACCTCCTCTCTGACATGGCCCATATCTCGGGTCTGG
TGGCGGCGGGCGCCATCCCCTCCCCCTTCCCGCACTCGGACATCGTCACC
ACCACCACGCACAAGTCCCTGCGGGGTCCGCGGGGGGCGATGATCTTCTA
CCGCAAGGGGGTCCGGAGGGTGACGAAGAAGGGGGTGGAGATCCCCTACG
ACCTGGAGGAGAAGATCAACTTCGCCGTCTTCCCCGGGCTGCAGGGGGGG
CCCCACAACCACACGATCGCCGCACTGGCAACGGCCCTCAAGCAGGCGGC
CTCCCCCGAGTTCAAGAAATACCAGGAGCAAGTGCTGCAGAACAGCAAAC
GGCTGGCGGAGACGCTGACCAAGGCCGGGTACTCCCTCGTCTCGGGCGGC
ACGGATAACCACCTGGTCCTGGTGGACCTGAAGCCGCAGCAGGTGGACGG
TGCGCGCGTGGAGCGCGTGATGGAGCTGGCGAACATGGCGGCGAACAAGA
ACACGGTCCCCGGGGATAAGAGCGCCTTGACGCCCGGGGGCATCCGGATC
GGGTGCCCGGCCTTGACGAGTCGCGGGTTCACGGAGGAGGATTTCGAGCA
GGTGGGTCATTTCTTCGACCGGGCTGTGAAGATCGCGCAGGAGATAAAGA
GGGAGACGGGCCCCAAGATCAAGGACTTCAAGGAGGCGCTCAGGGAGGGT
CCGGGCAAGCACCAGGCCCTGGTCGACCTCAAGAAGGACGTCGTCGCATT
TGCCCAGAAGTTCCCGACCGTGGGCTTTTAAGTGGGCGAGAGGCAGCGAA
GGAGGGAGGGAAGGAGGGAGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGG
AGGCAGGGAAGGAGGGAGGGAGGGAGGGAGGGGAAGTCGATAGGCAAGGG
TGCGAAGGTCCTGGGGCATGGCGGGGCCTGGATGGAAGGAGGGAGGGAAG
GAAGGGGGAGGGAGGGGGGGAGGGTGATAGGACAAGGGATTAAGGGTAAA
GAGCGCGTGCCCGGGGGCAGGCTGCGGCCATGCGGTTGACCGTGGGGAGG
CGAGGATGGACAGGTTGTAGGAACAGGGGGCATGAGGAATGGTGGGGCAT
GTATGACGAGGGCGGGAGGGAGGGAGGGAGAAGGCCGGTCTCAGAGGAAC
AAGGGCAGAAGGGTGGGAGGGGGATGGGGCTGAGTCTGGGAGGGAGGCGA
TCCCAGGCGGGAGGAGGGGAATGCGAGGCCGTGTGAAGAGAGAAGGGTCG
GGAGGGCAAGGGTTAGGGTTCGATGATCGCCAGGGGGTTGCTGCAAATCA
AAGTGAAAATTAGCGAGATACTAGTCGTAGGG
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protein sequence of rna8628

>rna8628-protein ID=rna8628-protein|Name=rna8628|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MTRRHRSPPRGFFLVALLAALAPLHCHLLVKAFQRPAGNPFLPVWPEKIT
SQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTP
YDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAA
KRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDC
HLYIGSALLVKDSWDPDNEDHVTVRV
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mRNA from alignment at KK037249.1:459780..460650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8628 ID=rna8628|Name=rna8628|organism=Nannochloropsis gaditana|type=mRNA|length=871bp|location=Sequence derived from alignment at KK037249.1:459780..460650+ (Nannochloropsis gaditana)
ATGACCAGAAGGCATAGATCGCCACCCCGTGGCTTTTTCCTGGTCGCGTT
ACTCGCCGCACTGGCCCCTCTTCACTGCCACCTCCTGGTGAAAGCCTTTC
AACGTCCTGCAGGAAATCCCTTCTTGCCTGTTTGGCCGGAAAAGATTACT
AGCCAATCTGCCTCCCAAGCGCTAAACCCTCCACTATCGCCTATCCTGTC
TTCGATTCGTCGCGTGGTGCGATTGCAAGCCACGCCCGATCAAGTCAGAT
TGCCAGACCTGTCCCAGACGGCCTTCcccgagaaggaagacgacacGCCC
TACGATTTGATCGTACTGGGTTCGGGTCCTGCGGGGGAAACAGCGGGATG
CAAAGCCGCGCAGCTCGGTCAGAAAGTCGCCATCATTGAAATCAAGAAGG
CATTCGGCGGGCCCACGGGCTTAACCTCGAAAGCAGTCCGAGAGGCGGCC
AAGCGGATCCTGAAAACCGTCGATCAGGTGGGTGGTGACCGCATGAAACA
AATTCGACGTCTCTGGAAGAAGCGTTTCCCGGCCCTAAAgtcggaggcgg
aggtgtaCCAGGCTGCCGAAACGCGAGACCGGTTGGTCAAGAATGATTGC
CATTTGTACATcggctccgccctcctcgtgaAGGACAGCTGGGATCCGGA
CAAGTAAGTGAGCCAGGTGGGGGGTAAGGCAATGACTCTACGACGGGCGT
GGACACAGGGGTTCCCGACGTCTGTCTCGCGAGCTCCCGCTCATTCCGCT
TCCCACGGCCTCAGCGAGGACCACGTCACAGTCAGGGTGTGTCGGCCCAC
GGGCTGCGTCGAGCTCCGGTCGCGCTACTTGGTCATCGCCACGGGCTCGC
GGCCATCTCGGCCCAAGGTAA
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Coding sequence (CDS) from alignment at KK037249.1:459780..460650+

>rna8628 ID=rna8628|Name=rna8628|organism=Nannochloropsis gaditana|type=CDS|length=2043bp|location=Sequence derived from alignment at KK037249.1:459780..460650+ (Nannochloropsis gaditana)
ATGACCAGAAGGCATAGATCGCCACCCCGTGGCTTTTTCCTGGTCGCGTT
ACTCGCCGCACTGGCCCCTCTTCACTGCCACCTCCTGGTGAAAGCCTTTC
AACGTCCTGCAGGAAATCCCTTCTTGCCTGTTTGGCCGGAAAAGATTACT
AGCCAATCTGCCTCCCAAGCGCTAAACCCTCCACTATCGCCTATCCTGTC
TTCGATTCGTCGCGTGGTGCGATTGCAAGCCACGCCCGATCAAGTCAGAT
TGCCAGACCTGTCCCAGACGGCCTTCcccgagaaggaagacgacacGCCC
TACGATTTGATCGTACTGGGTTCGGGTCCTGCGGGGGAAACAGCGGGATG
CAAAGCCGCGCAGCTCGGTCAGAAAGTCGCCATCATTGAAATCAAGAAGG
CATTCGGCGGGCCCACGGGCTTAACCTCGAAAGCAGTCCGAGAGGCGGCC
AAGCGGATCCTGAAAACCGTCGATCAGGTGGGTGGTGACCGCATGAAACA
AATTCGACGTCTCTGGAAGAAGCGTTTCCCGGCCCTAAAgtcggaggcgg
aggtgtaCCAGGCTGCCGAAACGCGAGACCGGTTGGTCAAGAATGATTGC
CATTTGTACATcggctccgccctcctcgtgaAGGACAGCTGGGATCCGGA
CAACGAGGACCACGTCACAGTCAGGGTGTAAATGACCAGAAGGCATAGAT
CGCCACCCCGTGGCTTTTTCCTGGTCGCGTTACTCGCCGCACTGGCCCCT
CTTCACTGCCACCTCCTGGTGAAAGCCTTTCAACGTCCTGCAGGAAATCC
CTTCTTGCCTGTTTGGCCGGAAAAGATTACTAGCCAATCTGCCTCCCAAG
CGCTAAACCCTCCACTATCGCCTATCCTGTCTTCGATTCGTCGCGTGGTG
CGATTGCAAGCCACGCCCGATCAAGTCAGATTGCCAGACCTGTCCCAGAC
GGCCTTCcccgagaaggaagacgacacGCCCTACGATTTGATCGTACTGG
GTTCGGGTCCTGCGGGGGAAACAGCGGGATGCAAAGCCGCGCAGCTCGGT
CAGAAAGTCGCCATCATTGAAATCAAGAAGGCATTCGGCGGGCCCACGGG
CTTAACCTCGAAAGCAGTCCGAGAGGCGGCCAAGCGGATCCTGAAAACCG
TCGATCAGGTGGGTGGTGACCGCATGAAACAAATTCGACGTCTCTGGAAG
AAGCGTTTCCCGGCCCTAAAgtcggaggcggaggtgtaCCAGGCTGCCGA
AACGCGAGACCGGTTGGTCAAGAATGATTGCCATTTGTACATcggctccg
ccctcctcgtgaAGGACAGCTGGGATCCGGACAACGAGGACCACGTCACA
GTCAGGGTGTAAATGACCAGAAGGCATAGATCGCCACCCCGTGGCTTTTT
CCTGGTCGCGTTACTCGCCGCACTGGCCCCTCTTCACTGCCACCTCCTGG
TGAAAGCCTTTCAACGTCCTGCAGGAAATCCCTTCTTGCCTGTTTGGCCG
GAAAAGATTACTAGCCAATCTGCCTCCCAAGCGCTAAACCCTCCACTATC
GCCTATCCTGTCTTCGATTCGTCGCGTGGTGCGATTGCAAGCCACGCCCG
ATCAAGTCAGATTGCCAGACCTGTCCCAGACGGCCTTCcccgagaaggaa
gacgacacGCCCTACGATTTGATCGTACTGGGTTCGGGTCCTGCGGGGGA
AACAGCGGGATGCAAAGCCGCGCAGCTCGGTCAGAAAGTCGCCATCATTG
AAATCAAGAAGGCATTCGGCGGGCCCACGGGCTTAACCTCGAAAGCAGTC
CGAGAGGCGGCCAAGCGGATCCTGAAAACCGTCGATCAGGTGGGTGGTGA
CCGCATGAAACAAATTCGACGTCTCTGGAAGAAGCGTTTCCCGGCCCTAA
AgtcggaggcggaggtgtaCCAGGCTGCCGAAACGCGAGACCGGTTGGTC
AAGAATGATTGCCATTTGTACATcggctccgccctcctcgtgaAGGACAG
CTGGGATCCGGACAACGAGGACCACGTCACAGTCAGGGTGTAA
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Synonyms
Publications