EWM22095.1, cds8601 (CDS) Nannochloropsis gaditana

Overview
NameEWM22095.1
Unique Namecds8601
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:459780..460432 +
Alignment locationKK037249.1:460544..460567 +
Alignment locationKK037249.1:460647..460650 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22095.1
Productsoluble pyridine nucleotide transhydrogenase
Orig transcript idgnl|cribi|Naga_100039g1.4433.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:459780..460432 +
KK037249.1supercontigKK037249.1:460544..460567 +
KK037249.1supercontigKK037249.1:460647..460650 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM22095.1 vs. NCBI_GenBank
Match: gi|585102512|gb|EWM22095.1| (soluble pyridine nucleotide transhydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 462.225 bits (1188), Expect = 1.064e-164
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MTRRHRSPPRGFFLVALLAALAPLHCHLLVKAFQRPAGNPFLPVWPEKITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV 226
            MTRRHRSPPRGFFLVALLAALAPLHCHLLVKAFQRPAGNPFLPVWPEKITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV
Sbjct:    1 MTRRHRSPPRGFFLVALLAALAPLHCHLLVKAFQRPAGNPFLPVWPEKITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV 226          
BLAST of EWM22095.1 vs. NCBI_GenBank
Match: gi|553179620|ref|XP_005852731.1| (soluble pyridine nucleotide transhydrogenase, partial [Nannochloropsis gaditana CCMP526] >gi|422295805|gb|EKU23104.1| soluble pyridine nucleotide transhydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 410.994 bits (1055), Expect = 1.586e-141
Identity = 207/226 (91.59%), Postives = 207/226 (91.59%), Query Frame = 0
Query:    1 MTRRHRSPPRGFFLVALLAALAPLHCHLLVKAFQRPAGNPFLPVWPEKITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV 226
            MTRRHRSPPRGFFLVALLAALAPLHCHLL                   ITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV
Sbjct:    1 MTRRHRSPPRGFFLVALLAALAPLHCHLL-------------------ITSQSASQALNPPLSPILSSIRRVVRLQATPDQVRLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNEDHVTVRV 207          
BLAST of EWM22095.1 vs. NCBI_GenBank
Match: gi|299470693|emb|CBN79739.1| (soluble pyridine nucleotide transhydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 61.2326 bits (147), Expect = 1.812e-7
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0
Query:  171 LWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVKDSWDPDNE---DHVTVRV 226
            +WK RFPAL+++AEV QAAETRDRL KN   LYIG A ++  S  P  E     + VRV
Sbjct:    1 MWKLRFPALRAQAEVLQAAETRDRLAKNLIDLYIGEAEILPQSKRPKEERQNGEIAVRV 59          
BLAST of EWM22095.1 vs. NCBI_GenBank
Match: gi|1028419579|gb|OAI49553.1| (pyridine nucleotide-disulfide oxidoreductase [Nitrospira sp. SCGC AG-212-E16])

HSP 1 Score: 59.6918 bits (143), Expect = 6.264e-7
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0
Query:  101 YDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLT----SKAVREAAKRI--LKTVDQVG-GDRMKQIRRLWKKRFPA---LKSEAEVYQAAETRDRLVKNDCHLYIGSALLV 210
            YDL+V+GSGPAG+ A  +AA+LG+KV IIE K   GG +  T    SKA+REA   +   +  +  G G R+K+   +    F A   +K+E E+ +     D++ +N   L  G A  V
Sbjct:    4 YDLLVIGSGPAGQKAAVQAAKLGKKVGIIERKAVVGGASTNTGTIPSKALREAVLYLSGFRQRNLYGAGYRLKETVTIEDLAFRANHIIKNEIEIVE-----DQMARNRIDLIYGEARFV 118          
BLAST of EWM22095.1 vs. NCBI_GenBank
Match: gi|748659517|ref|WP_039917653.1| (NAD(P)(+) transhydrogenase [Cellvibrio mixtus])

HSP 1 Score: 59.3066 bits (142), Expect = 8.405e-7
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 0
Query:   94 EKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTG----LTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFP-ALKSEAEVY--QAAETRDRLVKNDCHLYIGSALLV 210
            +K  D  YDL+V+GSGP+GE+A   A+++G++VA+IE +   GG       + SK++R   K+I++         +   RRL    FP  L+S A+V   Q     +  V+N  +++IG A  V
Sbjct:    5 KKSADHSYDLLVIGSGPSGESAAISASKIGKRVAVIENRALVGGSCAHKGTIPSKSLRHVVKQIIQFKSNSLFREIGDSRRL---TFPRVLQSAAKVIPKQVEMHTNFYVRNRVNVHIGQASFV 125          
The following BLAST results are available for this feature:
BLAST of EWM22095.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102512|gb|EWM22095.1|1.064e-164100.00soluble pyridine nucleotide transhydrogenase [Nann... [more]
gi|553179620|ref|XP_005852731.1|1.586e-14191.59soluble pyridine nucleotide transhydrogenase, part... [more]
gi|299470693|emb|CBN79739.1|1.812e-754.24soluble pyridine nucleotide transhydrogenase [Ecto... [more]
gi|1028419579|gb|OAI49553.1|6.264e-737.50pyridine nucleotide-disulfide oxidoreductase [Nitr... [more]
gi|748659517|ref|WP_039917653.1|8.405e-733.87NAD(P)(+) transhydrogenase [Cellvibrio mixtus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8628rna8628Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications