rna8622, rna8622 (mRNA) Nannochloropsis gaditana

Overview
Namerna8622
Unique Namerna8622
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3033
Alignment locationKK037249.1:446995..448101 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100039g8.4439.mrna
Orig protein idgnl|cribi|Naga_100039g8.4439
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:446995..448101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g8gene8357Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8622rna8622-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22101.1cds8595Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8622 ID=rna8622|Name=rna8622|organism=Nannochloropsis gaditana|type=mRNA|length=3033bp
CCGTCATATCCTATATAAATTTCTATAGCAACACCACAGCGTCTATGTCA
GACGCAGAAAACAAAGATTCTGCCGCTGGCTGGCGTCCAGGAAAAGTTAT
CGGGAAAATCCGTGAACGACAATCGAGAAGACGAGCGCTTCGGAAAAAAG
GGCAAGAAACGTGTGAAACTGGAAACGAGACCCTTCAAGAAGAGATTCCA
ATACGGCCGGAAAGGATACACGACGCTCGTGTGAATTATTCATTACGAAA
TGAACAGATCAAAGTAGCGGTTCAAGCTGGGGAGGGGGACAGCTTCGCAG
CGCGGCAGGTCGGAGGATGGTTTCCCGGAAAATACGCAGAGAAACTTTTT
CGTCGTGGCGCGAAACGTTTGCTCGGCTTGGTGAACGAGGAAAATCAACA
GCGCCATGATGAAGCGATTACTGTGGGAAAACTGACTCTAATTTTCAAAG
GCGCAAAAAAGTTGGGCAAAGGGGGAAGAAGAGCAAGACTTGAGGAAAAT
CAAGGAGGGGGGGGGAGCGGAATACTTAATCCTTACTTCGAGGTCTGGTG
CGAAGGCACCAAGCGTCTCATCAAACCCAAAGCATTTCAGGATAGTAGTG
AAGGAGGCGTGGGGGTGGAAGGAGGCGACTGGACACCCGTGGGCTTGCCA
TATCCAGACACGGACCCCGCATGGCAAGAGACTGCCTTGCATTTCGACGT
GACGGACATCACCACCGACGTGCATATCCTGCTTCTCGACAAGCGTCCCC
TGAGGACCCTGCCTGTCGGCCGCCTCATCCTACCTTTGCCGAATTTTCTA
GGTTGCCGTCATCCGTTACCCCCAGAGACGTCCGTTTTCGATTTGGTCGC
CACCGAAATGATCGAGTGCGGGCAACGTCCTGCGACATACCAAGCCCTGC
TCTCCCAGAAGTATGCGCCACAGATGAAAGTGGCATCATCCCCTTCTTCC
ATCTTGCCCGCTATCAACGACGGTGTGGTGGGCCAGGTCGTTCTCGAGGT
AGCCTTGGAAACTTCGCACGACCTTTTCAACACTTATTTAGCATCCCGCC
CCTTGCGTGCCGACAGCTTTTCCTCAGGATCGACCTCTTCTCGCGTCGGG
GCAGAAGAGCCCGCTCCCGCGAGTGAAATCAAAGCGGCAGCGGAAGAGCC
CACCCTGCAAAATGTCGACATACGCCAATTAGCTATTAATGTCTTTCGCA
TAAAAAAAGCCTTGGAGGCGCCCCCACTCCTCTTTTACCTTTTGGACCAT
CCTATCTTCTTTTTTCCCCTCGTGAGCTATCTGGTATTCGCTCCCTTATG
GACTCTCCCGCTACACGTCTGCCTTCTTCCCTTCTTTAATGGTATTTTTA
CAGCAAGGAATGCTGTTCCATCTTTTCTGAGCACGGATTCCTCGTCCTTG
CCGTCCTCTACCTCCTTTCCTTCTATCGAGTACTGGCCCCCCGGCCTGGT
TGAACGCGTCCAAGAAATGGAATCCTCCTCCGCTCGAACCAAACTTCGGC
GGCTTAGGACAGCACTTCGTTGGCTTCAAGATCATCTTGGACTGGTGGCA
TCACTTTTAGAGCGATGTACCTTTATTTTCAATTGGGAGGATCCTCATGT
TACTTTACCTGTTACTGCAGGTATCGCGGTCGGTACGTCCGTGCTCAGTT
TGATGCTGTACTTTATACCAATTAAGATACTCATATGGTGCGTAGTAGTC
TCACTGTATATGAAAATGCGAAAGAAAAGGCTGGAGTCAAGTCTGGAAAT
GGTACAGACGAAGGGCATTCATGTTCATGAAACGAAGGAGAAGAGAGAAA
GGAGAGCTACATGTGACTTACGACAAGCTGGCGATACCCCAGGTGTTGAG
GAAGCGCCGAAAGTCAATTGTAAAGCATTGCTGGGTAGTTCGCGCAGGCT
GTCTACCGTAACATCAAATGTGTTTGCTCGCACCCCTGATGCATTGGAGG
TCTTGCACCGGAGAATAGCGCGTGGATATATGCACAAGGATCCCGACTTT
GGACCCAAGATTATGTCAGATTGTTGTAAAAAGACTGATTAAGGAACATA
CGGAACTAGATGAATTGCAGCACAGTGTGAATTGCGCAGGTAACTTTCAT
ATACGTTTCCGAAAATCGAAAGAGAATCCCAACACAAGTGTTTCAAAAAT
TCAAACTTAGCAACGGTTCGGAGCGGCAGAAACCTCTGACTGCGTTAAAC
TGCCGTTTAGGAGTTTCCATCACCGCATTCTGCGCGAAAACATGCTCCAG
CTGGCTGAGTCCTCTTTATTGTCACAAGAATCACTCACAATTGGAATGAT
ACATCGTGTCGGCAACTGAAACTGAAAAATGATCCAAAGGATAACTTCAC
AAACACTGAGGCCATCACATTGATTCAGGATGGCGGAAGGTCAATTGGTC
TCCAGTGCTCGTTCGGCTCCCGACACAACCTGTTCGAACTTCCAGTACGC
TGTTTTTCCATTATTTTCCCTCCTTGTTGCGGACGTGGCTCTCTATCGCA
TTCAAATGTGGGCTCTTGCATATTGGACCAGCTTTCTTCTTCTTTCGCTT
CTATTTTTGATTCAAGTCGAGTGTGCTGAGGATGTAATTGAGACTAGCCG
TTCCAGGACTCGGTCCAGGCACATGGCAAGATGTTCGTGCGACTTTGCCG
TACATGATCAAGATATGAAAAGCTATTATCTTATGTGCCACACAGAACCA
AAGAGTATTCAAGATATTATCATTCCGGAAAATGCGTGCGCATTACCCAA
GCAGTAAAGAATGATTAGGAGGACTGGGATTTCTTTCCGAATTTTGCAGT
TTGACTCAGCAACAACGTAAAAGAACAATTAATAAACACAGAGACTGACA
AGTGTGAAAGCAGTCTCATCCAAGAAGCCAACCTTGTGATTTAATGCTTG
ACTTTCTCTTTCTGTACAATCCCGTAGATACACTTCTGTCTCCCAAATTG
CCAACATCCAAGCCCAACTGATTCCGTCCTATCCTCAATCTTAAAGAAAG
TACGATTCATAAATACCCTGAGCATCGGCGATC
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protein sequence of rna8622

>rna8622-protein ID=rna8622-protein|Name=rna8622|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
MWRAAGIWDRRWPFFTLIPIVFIFSFPSHTCGYHSPQISLSLRRHVMQRP
CHALQQRRHALRHALTVSLGVCLGANLTPRPLPSARAADRSGGRKGLVNI
LRIRAFIVTLKETLKELVDKGATSAPAEVNQQIKYLVRTVRMPESINDAA
MLIESSRDREAARGVGRSGYEYLTQVIEFSGFEDMKREGVSKYATLSSPE
RIEFALKCLTAAEQELERYFRYFPSAVIADAQGIYESYFL
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mRNA from alignment at KK037249.1:446995..448101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8622 ID=rna8622|Name=rna8622|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp|location=Sequence derived from alignment at KK037249.1:446995..448101- (Nannochloropsis gaditana)
GAACAACCTCCTCCATGCATGCTCCTCCTCATTTACGCCTAACTTCCTCC
ATTGTATTTATCAAACCACAGACATCTCACCAATATCCATGTGGAGAGCA
GCAGGTATTTGGGATAGACGGTGGCCGTTCTTTACCCTTATACCCATCGT
ATTTATCTTCAGCTTTCCCTCACACACCTGTGGTTATCATAGCCCTCAAA
TTTCATTATCACTACGCCGTCATGTCATGCAGCGGCCATGCCATGCCCTG
CAACAGCGTCGTCATGCCTTGCGACATGCCTTGACCGTTTCCTTAGGTGT
ATGTTTGGGGGCGAATTTGACGCCGCGGCCACTACCATCGGCGCGGGCAG
CAGACAGAAGTGGTGGCCGTAAAGGTCTGGTGAACATCCTTCGGATTCGA
GCTTTTATAGTTACTTTGAAGGAGACGCTGAAAGAACTCGTCGATAAAGG
TGCGACAAGCGCACCTGCTGAAGTAAATCAGCAAATTAAGTACCTGGTTC
GCACGGTACGAATGCCAGAATCGATTAACGATGCTGCTATGTTGATAGAG
TCTTCCCGCGACCGAGAGGCGGCCCGAGGTGTCGGTAGATCAGGCTACGA
GTACTTGACGCAAGTGATCGAATTCAGTGGCTTCGAAGATATGAAGCGAG
AGGGCGTCAGCAAATATGCGACTTTATCCAGTCCAGAGCGCATAGAGTTT
GCTTTAAAGTGTCTGACAGCAGCGGAGCAAGGTGCGCATCTCGCAGGAAT
TACTACTTGGTTCCACGTTGCTTATAATGCTGTTGACGAGGGTCTCATAA
ACACATTCTCTTTCTCGCTTCTCCCACACAGAGCTCGAACGATACTTCCG
CTACTTCCCTAGCGCAGTGATCGCCGATGCTCAGGGTATTTATGAATCGT
ACTTTCTTTAAGATTGAGGATAGGACGGAATCAGTTGGGCTTGGATGTTG
GCAATTTGGGAGACAGAAGTGTATCTACGGGATTGTACAGAAAGAGAAAG
TCAAGCATTAAATCACAAGGTTGGCTTCTTGGATGAGACTGCTTTCACAC
TTGTCAGTCTCTGTGTTTATTAATTGTTCTTTTACGTTGTTGCTGAGTCA
AACTGCA
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Coding sequence (CDS) from alignment at KK037249.1:446995..448101-

>rna8622 ID=rna8622|Name=rna8622|organism=Nannochloropsis gaditana|type=CDS|length=1446bp|location=Sequence derived from alignment at KK037249.1:446995..448101- (Nannochloropsis gaditana)
AGCTCGAACGATACTTCCGCTACTTCCCTAGCGCAGTGATCGCCGATGCT
CAGGGTATTTATGAATCGTACTTTCTTTAAATGTGGAGAGCAGCAGGTAT
TTGGGATAGACGGTGGCCGTTCTTTACCCTTATACCCATCGTATTTATCT
TCAGCTTTCCCTCACACACCTGTGGTTATCATAGCCCTCAAATTTCATTA
TCACTACGCCGTCATGTCATGCAGCGGCCATGCCATGCCCTGCAACAGCG
TCGTCATGCCTTGCGACATGCCTTGACCGTTTCCTTAGGTGTATGTTTGG
GGGCGAATTTGACGCCGCGGCCACTACCATCGGCGCGGGCAGCAGACAGA
AGTGGTGGCCGTAAAGGTCTGGTGAACATCCTTCGGATTCGAGCTTTTAT
AGTTACTTTGAAGGAGACGCTGAAAGAACTCGTCGATAAAGGTGCGACAA
GCGCACCTGCTGAAGTAAATCAGCAAATTAAGTACCTGGTTCGCACGGTA
CGAATGCCAGAATCGATTAACGATGCTGCTATGTTGATAGAGTCTTCCCG
CGACCGAGAGGCGGCCCGAGGTGTCGGTAGATCAGGCTACGAGTACTTGA
CGCAAGTGATCGAATTCAGTGGCTTCGAAGATATGAAGCGAGAGGGCGTC
AGCAAATATGCGACTTTATCCAGTCCAGAGCGCATAGAGTTTGCTTTAAA
GTGTCTGACAGCAGCGGAGCAAGAGCTCGAACGATACTTCCGCTACTTCC
CTAGCGCAGTGATCGCCGATGCTCAGGGTATTTATGAATCGTACTTTCTT
TAAATGTGGAGAGCAGCAGGTATTTGGGATAGACGGTGGCCGTTCTTTAC
CCTTATACCCATCGTATTTATCTTCAGCTTTCCCTCACACACCTGTGGTT
ATCATAGCCCTCAAATTTCATTATCACTACGCCGTCATGTCATGCAGCGG
CCATGCCATGCCCTGCAACAGCGTCGTCATGCCTTGCGACATGCCTTGAC
CGTTTCCTTAGGTGTATGTTTGGGGGCGAATTTGACGCCGCGGCCACTAC
CATCGGCGCGGGCAGCAGACAGAAGTGGTGGCCGTAAAGGTCTGGTGAAC
ATCCTTCGGATTCGAGCTTTTATAGTTACTTTGAAGGAGACGCTGAAAGA
ACTCGTCGATAAAGGTGCGACAAGCGCACCTGCTGAAGTAAATCAGCAAA
TTAAGTACCTGGTTCGCACGGTACGAATGCCAGAATCGATTAACGATGCT
GCTATGTTGATAGAGTCTTCCCGCGACCGAGAGGCGGCCCGAGGTGTCGG
TAGATCAGGCTACGAGTACTTGACGCAAGTGATCGAATTCAGTGGCTTCG
AAGATATGAAGCGAGAGGGCGTCAGCAAATATGCGACTTTATCCAGTCCA
GAGCGCATAGAGTTTGCTTTAAAGTGTCTGACAGCAGCGGAGCAAG
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Synonyms
Publications