rna8619, rna8619 (mRNA) Nannochloropsis gaditana

Overview
Namerna8619
Unique Namerna8619
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length945
Alignment locationKK037249.1:441204..442636 +

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Properties
Property NameValue
Productlipase family protein
Orig transcript idgnl|cribi|Naga_100039g12.4416.mrna
Orig protein idgnl|cribi|Naga_100039g12.4416
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:441204..442636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g12gene8354Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8619rna8619-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22078.1cds8592Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8619 ID=rna8619|Name=rna8619|organism=Nannochloropsis gaditana|type=mRNA|length=945bp
ATGACAAGCACCATCGATGCAGGAGTATGCGGTTTCATAGGGCTGGGGTT
GATGGGAATGGGGATGGCGAAGAATTTACTGAAAAAGCGGCAGCACCACC
TCATCATCTGGAACCGAGACACAGGCAAAGCCCAAGACCTCGCCACCGCA
TTTCCAGGCCGTGTTACCGTAGCACACACGCCCAAAGAAGTGGTATCCAC
GGCGCAGGTGACGTTTTCGATGCTCTCTACGCTTGAGGCTTCTGCGGCTG
TATTCGAGGGCCCCGACGGCGTTTTGGCGGGGACAGGGCCGTCCACAGCC
ATTGTGGATTGTGCGACACTGACACCGGAGCGCATGGCGGAAATGGCAAC
GCAGGTGGAAGAGAAAGGTGCCATCTTCTTGGAAGCACCCGTGTCTGGAA
GCAAGGGCCCGGCCGAACAGGGCACGTTGATCTTCATGTGCGCAGGAGAC
AAAGCGCTGTACGAGCGAGTCGCCGAGGACCTGGACGCCATGGGAAAGGC
CAGATACTTCTTGGGTGCAGTCGGAGCAGCATCGCGGATGAAGATCGTCG
TGAATATGACCATGGGTGGCATGCTGGCCTGCTTCTCGGAGGGCCTGGGC
CTGGCAAAAGCAGCGGATTTGCCTCTGGAGGACCTCCTGGAGATCTTGGA
TGGGGGAGCATGTGCTTGCCCCATGTTCAAATTGAAAGGGCCTCACATGT
TGCGACGTAGCTATGACGCCGCATTTCCCCTGAAGCACGCCCAGAAAGAC
ATGCGGTTCGCCGTGGAGCTGGGTGACAAGCTCGCGCAGCCCTTGCCTGT
GTCAGCGGCGGCCAACGAGGTGTATAAGAGGGCACGGCAGCAAGGCCACG
AAGATGATGATTTTAGTGCTGTTGCAGAGGTTACTGTGCACCATGACAAA
CAGGTGAACGGGGGGGCAGCGAAAGGGAAAGCGGGGCGAGCGTGA
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protein sequence of rna8619

>rna8619-protein ID=rna8619-protein|Name=rna8619|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MTVEMELARPGLLTSPHPLRHTMNYVQTLLPFLSHRSEAEQQKCLMSLKL
SQRFLCTVYFCFILPWIQAWDAPIHQEDTTLNARTATSFRPQSNLIQREY
GYNETMARHFVDLCGCAYCCIRGCDTCWTYPALNVTEVHSRVLDGHGFVG
LDAPQNVVYIVFTGTDPLAVQNYFDDLDFIPVEFPGCEGCWVHRGFYHTY
LGLRDQVLDTLAVFSHDHPSAKLHITGHSLGGAMAVFAALELIHSLGLRV
QTLYTFGQPRVGNAAFQTFLHEALSLSSCAHFRITQHRDPIVHLPPTFVP
SRSMGFQHEPQEVFYPCGVLRGNITKMSGTESNKTFNPWNSSVSDPESCQ
YIVCDPVEGEDPRGSDRFRVDLNFVDHVTYLGFPFTANYMLCDLFQMKDK
ENSRHMRSRGDQEVQTEELLRSTQ
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mRNA from alignment at KK037249.1:441204..442636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8619 ID=rna8619|Name=rna8619|organism=Nannochloropsis gaditana|type=mRNA|length=1433bp|location=Sequence derived from alignment at KK037249.1:441204..442636+ (Nannochloropsis gaditana)
atgacgGTCGAAATGGAACTCGCGCGTCCTGGCttgttaacctcccccca
tcccttacGTCACACAATGAATTATGTCCAAACACTGCTGCCCTTTCTCT
CACATAGGTCTGAAGCTGAGCAACAGAAATGCTTGATGAGTTTGAAGCTA
AGCCAACGATTCCTGTGTACAGTATATTTCTGTTTTATCTTGCCTTGGAT
CCAAGCATGGGACGCACCCATCCATCAAGAGGATACGACCTTGAATGCGA
GGACGGCGACTTCCTTCCGACCTCAGTCAAATTTGATACAGAGGGAATAC
GGATACAATGAAACCATGGCCCGACACTTCGTCGACCTTTGTGGTAAGCA
GCATCGATTCATTCTTTCTTGATTCACTCATCTCGGTTACGCGGCTGTCG
CACGCTCCATTTCATGAACCAGCTGTATCCCTTGCCCCCTCGAAAGTTCT
TCTTTTCTACCAGATGTTCAATTAACATCCTTTTTATTTTCTGAAAAATA
GGCTGCGCATACTGTTGCATTCGAGGCTGCGATACGTGTTGGACTTACCC
GGCTCTAAATGTGACAGAGGTCCACTCCCGTGTCCTTGATGGGCATGGGT
TTGTAGGGCTGGATGCTCCTCAAAACGTTGTCTACATTGTTTTCACCGGA
ACTGACCCACTTGCCGTGCAGAATTATTTTGACGATCTGGACTTCATTCC
TGTAGAGTTCCCGGGGTGCGAAGGCTGTTGGGTCCACCGTGGATTTTATC
ATACGTACCTAGGCTTACGCGACCAGGTGCTGGATACGCTGGCCGTTTTC
AGTCATGATCACCCGAGTGCGAAACTTCATATCACCGGTCACTCATTGGG
AGGAGCCATGGCCGTCTTCGCAGCATTGGAGTTGATTCATAGCTTGGGGC
TGCGTGTCCAGACTCTTTACACATTCGGACAACCACGCGTTGGAAACGCC
GCGTTCCAGACCTTCCTTCACGAAGcactttccttgtcctcctgtGCGCA
TTTCCGAATCACGCAGCACAGGGATCCGATAGtgcatcttcctcccacat
TCGTTCCTTCGCGTTCGATGGGATTTCAGCATGAGCCGCAGGAGGTTTTT
TATCCTTGTGGGGTCTTGCGAGGGAACATAACCAAGATGAGCGGTACCGA
GTCAAACAAAACATTCAACCCGTGGAACAGCAGTGTCTCTGACCCTGAAT
CTTGTCAATACATTGTCTGCGAccctgtggaaggagaagatccTCGAGGA
AGCGATCGATTTCGCGTCGACCTTAATTTTGTCGATCATGTCACTTACTT
AGGATTCCCTTTCACCGCCAATTACATGCTGTGTGACTTGTTTCAGATGA
AAGATAAAGAAAACTCAAGGCATATGCGCTCCAGAGGAGACCAAGAAGTT
CAAACTGAGGAGTTGCTGCGGAGCACACAGTAG
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Coding sequence (CDS) from alignment at KK037249.1:441204..442636+

>rna8619 ID=rna8619|Name=rna8619|organism=Nannochloropsis gaditana|type=CDS|length=2550bp|location=Sequence derived from alignment at KK037249.1:441204..442636+ (Nannochloropsis gaditana)
atgacgGTCGAAATGGAACTCGCGCGTCCTGGCttgttaacctcccccca
tcccttacGTCACACAATGAATTATGTCCAAACACTGCTGCCCTTTCTCT
CACATAGGTCTGAAGCTGAGCAACAGAAATGCTTGATGAGTTTGAAGCTA
AGCCAACGATTCCTGTGTACAGTATATTTCTGTTTTATCTTGCCTTGGAT
CCAAGCATGGGACGCACCCATCCATCAAGAGGATACGACCTTGAATGCGA
GGACGGCGACTTCCTTCCGACCTCAGTCAAATTTGATACAGAGGGAATAC
GGATACAATGAAACCATGGCCCGACACTTCGTCGACCTTTGTGGCTGCGC
ATACTGTTGCATTCGAGGCTGCGATACGTGTTGGACTTACCCGGCTCTAA
ATGTGACAGAGGTCCACTCCCGTGTCCTTGATGGGCATGGGTTTGTAGGG
CTGGATGCTCCTCAAAACGTTGTCTACATTGTTTTCACCGGAACTGACCC
ACTTGCCGTGCAGAATTATTTTGACGATCTGGACTTCATTCCTGTAGAGT
TCCCGGGGTGCGAAGGCTGTTGGGTCCACCGTGGATTTTATCATACGTAC
CTAGGCTTACGCGACCAGGTGCTGGATACGCTGGCCGTTTTCAGTCATGA
TCACCCGAGTGCGAAACTTCATATCACCGGTCACTCATTGGGAGGAGCCA
TGGCCGTCTTCGCAGCATTGGAGTTGATTCATAGCTTGGGGCTGCGTGTC
CAGACTCTTTACACATTCGGACAACCACGCGTTGGAAACGCCGCGTTCCA
GACCTTCCTTCACGAAGcactttccttgtcctcctgtGCGCATTTCCGAA
TCACGCAGCACAGGGATCCGATAGtgcatcttcctcccacatTCGTTCCT
TCGCGTTCGATGGGATTTCAGCATGAGCCGCAGGAGGTTTTTTATCCTTG
TGGGGTCTTGCGAGGGAACATAACCAAGATGAGCGGTACCGAGTCAAACA
AAACATTCAACCCGTGGAACAGCAGTGTCTCTGACCCTGAATCTTGTCAA
TACATTGTCTGCGAccctgtggaaggagaagatccTCGAGGAAGCGATCG
ATTTCGCGTCGACCTTAATTTTGTCGATCATGTCACTTACTTAGGATTCC
CTTTCACCGCCAATTACATGCTGTGTGACTTGTTTCAGATGAAAGATAAA
GAAAACTCAAGGCATATGCGCTCCAGAGGAGACCAAGAAGTTCAAACTGA
GGAGTTGCTGCGGAGCACACAGTAGatgacgGTCGAAATGGAACTCGCGC
GTCCTGGCttgttaacctccccccatcccttacGTCACACAATGAATTAT
GTCCAAACACTGCTGCCCTTTCTCTCACATAGGTCTGAAGCTGAGCAACA
GAAATGCTTGATGAGTTTGAAGCTAAGCCAACGATTCCTGTGTACAGTAT
ATTTCTGTTTTATCTTGCCTTGGATCCAAGCATGGGACGCACCCATCCAT
CAAGAGGATACGACCTTGAATGCGAGGACGGCGACTTCCTTCCGACCTCA
GTCAAATTTGATACAGAGGGAATACGGATACAATGAAACCATGGCCCGAC
ACTTCGTCGACCTTTGTGGCTGCGCATACTGTTGCATTCGAGGCTGCGAT
ACGTGTTGGACTTACCCGGCTCTAAATGTGACAGAGGTCCACTCCCGTGT
CCTTGATGGGCATGGGTTTGTAGGGCTGGATGCTCCTCAAAACGTTGTCT
ACATTGTTTTCACCGGAACTGACCCACTTGCCGTGCAGAATTATTTTGAC
GATCTGGACTTCATTCCTGTAGAGTTCCCGGGGTGCGAAGGCTGTTGGGT
CCACCGTGGATTTTATCATACGTACCTAGGCTTACGCGACCAGGTGCTGG
ATACGCTGGCCGTTTTCAGTCATGATCACCCGAGTGCGAAACTTCATATC
ACCGGTCACTCATTGGGAGGAGCCATGGCCGTCTTCGCAGCATTGGAGTT
GATTCATAGCTTGGGGCTGCGTGTCCAGACTCTTTACACATTCGGACAAC
CACGCGTTGGAAACGCCGCGTTCCAGACCTTCCTTCACGAAGcactttcc
ttgtcctcctgtGCGCATTTCCGAATCACGCAGCACAGGGATCCGATAGt
gcatcttcctcccacatTCGTTCCTTCGCGTTCGATGGGATTTCAGCATG
AGCCGCAGGAGGTTTTTTATCCTTGTGGGGTCTTGCGAGGGAACATAACC
AAGATGAGCGGTACCGAGTCAAACAAAACATTCAACCCGTGGAACAGCAG
TGTCTCTGACCCTGAATCTTGTCAATACATTGTCTGCGAccctgtggaag
gagaagatccTCGAGGAAGCGATCGATTTCGCGTCGACCTTAATTTTGTC
GATCATGTCACTTACTTAGGATTCCCTTTCACCGCCAATTACATGCTGTG
TGACTTGTTTCAGATGAAAGATAAAGAAAACTCAAGGCATATGCGCTCCA
GAGGAGACCAAGAAGTTCAAACTGAGGAGTTGCTGCGGAGCACACAGTAG
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Synonyms
Publications