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Properties
| Property Name | Value |
|---|
| Product | rna polymerase ii-associated protein 3 |
| Orig transcript id | gnl|cribi|Naga_100039g27.4435.mrna |
| Orig protein id | gnl|cribi|Naga_100039g27.4435 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:387880..391278 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8605 ID=rna8605|Name=rna8605|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
ATGCCGCGAAGCCGGTCCCGTTCCCTCAGTCGCGGCAGTGGCCGGCGACG
AAGAGGTCGAGAAGAAGATCGTGATTATGACCGGAATCGAAAACGGAGGG
AACGGAGCAGGAGCTCGGGCCGACACCGGGAAGGAGATGGCCGCAGGAAG
CATTCGCACCGAGACGATCTCAGGAAGGGAAAGAAGGCAGCTCGACGCGA
CGGGAGCTATGACGATGACGAGAAATTTAGTGGGAGGCGTCGTCAGCGGC
CCTCGCCCTCGCTATCCTCCTCTTCCTCCTCCTCCCTCTCCCCCCCTCGC
GGGACGGACAAAGCATCGAAGGGAGGATTACACCACAAGCCGCAGTCTAC
GCATTTCACGTCGCGCCCTTCCCCGCTAGAGCAGCGAATCTTGGACGAGG
AGGTGATTCGTCGGTTTGACAGCCGCATTAAGGAGCAGCTCGAAGAAAAA
GTCTCCGTGTACTGCGAATCCAGTGAGTTTCAAAAGCTTTTGGAGGACAT
GAAGAAACGAAAACGTGAAGAAATGCTCAATCGGATCGATCAAGACATAC
GGGCCGAGCGCGAGGCTGTCCTTGATTTGGAAAGGAAGCGTGCCGAGGCG
GAAGCGGAGGAAAAACGGAAACTTGCGCAAGTCCTGGAGGAGAATCGCCG
TAAAGTAGAGGAGCAGCGCCGTCTAGAGATGGAGGAGAAAGAACGTCAGG
ACGAGCAGAAGCTTCTCGAGATCCAGCGGCGACAGCAGATGGAGGAGGAG
GAAGAGAAACGGCGGGTGCGGGGAGTGCAGGCAACCGTCACAGGCACGGG
CCCTCGGACAGCACCGTCCGCTCTCTTTACTCTACCCCATGCCCCCCTTT
TGCGTGCGCGAATGTTCCCTTTTCTCATTGTGGAGTCCTCAACCCCTGGT
CGAGCCAACGGTCGGCACGGCACCCGTCTGCCTGCTGAGGGTCTGCCCTC
CTGGTGGCTGACGCAGAGAGGGGCTTCTCACGGAGCAACGTCCACGGAAT
TTGTACGGGGGCACCGGCGAAATCGCGTGCAGGTCGTGCCTGCATTGTTA
ATTATATGA back to topprotein sequence of rna8605 >rna8605-protein ID=rna8605-protein|Name=rna8605|organism=Nannochloropsis gaditana|type=polypeptide|length=946bp
MDLVSELFLAGHEDEKPPIRITPALLDANFIQSCDDPKVLRGILRRLKSG
KDGLSADLEREVKDRLWLFSPAQVRGKVTTLRAQTPPEEIADEEARLEKW
TAEICQRDKALLATAVESSIGGELVDLDRPNSDRLTPVRPMRTVTASRSR
VVGAREGTDYRAPTIVSSKSMQEALAPKVEDGNEDEEEVRAAESLLAATR
QTCDSLPAQRMVMAASLKEEGNAFFKRGEYAKALASYTKSLGFNALDPAV
CGNRALVYMRLGEWVKAEVDCTLAIARDPSYAKAWLRRGTIRRQRGKRAE
ARKDLEEVLRWGAGSMDGKVAREALALLHQMDEEGRACSQDGKDAVQGLR
DETSAPASTPSSCVPSGPRDREGSASKPEKGYPEATPRPVPLADISNETC
SMEMPSLEADFPPPLAEGFRRVPVVEGEAGRPSSIRALSTASPQAPREVS
LPLHTLHPRASFPQEASGERMRPSNDTLVQTNVSSEGASGGGSAPVKGKR
SRNGGPLRETLALKEMGNKALARGDLARAIQYYSEGIERDAGHLPLYNNR
CLAYLRQGLWEEARRDASRVLESEPENIKARYRRGKAACRAAESRVARVE
EVLGSTAGAGESLKGDRDPTVPLEAAEKALTAALKDLDWILERDKKNTEA
QKEQGVARLLLSKLQTMRQPSTLPAARKQSSKTNKSLNSPVPDVAPSDGT
VGALIKENLAQEPEDVLLAQRTGLEASHGARTGGKKGGETKGGSWFVREV
STQPRQCPAEPVRRVRVVEESCGSRDPVPCSTGARQPKDRPFPPAVDVLK
VPPPPKTVTMLETHWRTLKKRGDVGYLAAYLRGFNPKTFPRVFKRVTDQD
VVNDVFSVTAQVFCQGKDKGDAKMVCKVLEGMACVESFEMMRLLMSDVDK
ENIKAAFRFLEERSSSLPNVQASGRDSRDMKDAKMVLEDLRRKYFP back to topmRNA from alignment at KK037249.1:387880..391278+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8605 ID=rna8605|Name=rna8605|organism=Nannochloropsis gaditana|type=mRNA|length=3399bp|location=Sequence derived from alignment at KK037249.1:387880..391278+ (Nannochloropsis gaditana)
CAACATGTTCCACCCCCTGCCCTAGGCTTTTTTTCAACCCAATTGCTTCA
CGATTCACCGTCACAATACGTCCATGCAGGTCACTTTGAAATCCGTCCTT
CGCCCTCTGTGTCGTGCACATGGACTTGGTTTCCGAGCTGTTCCTCGCAG
GACACGAAGACGAGAAGCCGCCCATTCGTATCACCCCAGCTTTGTTGGAT
GCAAATTTCATCCAAAGCTGCGACGATCCCAAGGTCCTCCGAGGCATCTT
GCGCAGGCTCAAAAGTGGGAAAGACGGTCTTTCCGCAGATCTGGAGCGGG
AAGTGAAAGACCGGCTGTGGCTTTTTTCGCCCGCGCAAGTGCGAGGTAAA
GTCACGACCCTCCGGGCGCAAACACCCCCCGAGGAAATTGCGGACGAAGA
AGCTCGACTAGAGAAGTGGACCGCTGAAATTTGCCAAAGGGACAAGGCCT
TGCTGGCGACGGCGGTCGAGAGCTCCATCGGCGGTGAATTGGTTGACCTT
GATCGTCCTAACTCTGACCGGCTAACTCCCGTCCGGCCGATGAGGACGGT
GACGGCAAGCAGGTCGAGGGTGGTGGGAgccagggaggggacagatTACA
GGGCGCCCACGATCGTCTCATCCAAGTCTATGCAAGAGGCTCTAGCTCCC
AAAGTTGAGGATGgaaacgaggacgaggaggaggttcgaGCTGCCGAAAG
CCTGTTGGCGGCCACCAGGCAAACGTGCGATTCCCTGCCGGCACAGCGGA
TGGTCATGGCCGCGTCAttaaaggaggaagggaatgcaTTTTTCAAACGA
GGTGAGTACGCCAAGGCGCTTGCCAGTTACACGAAGAGCTTGGGCTTCAA
TGCGCTAGACCCGGCTGTCTGCGGGAACCGCGCTCTGGTGTACATGCGGC
TAGGGGAGTGGGTGAAGGCGGAAGTGGACTGCACGCTGGCCATCGCCCGA
GATCCTTCCTATGCTAAGGCATGGTTACGCCGGGGAACGATCCGGCGcca
gaggggaaagcgggcagaagcgaggaaggatcTAGAAGAAGTTCTTcggt
ggggggcgggaagcatGGATGGAAaagtggcgagggaggcccTTGCCTTG
CTGCACcagatggacgaggagggccgggCCTGTAGTCAAGACGGCAAGGA
TGCCGTGCAAGGATTGAGGGATGAGACATCGGCTCCAGCCTCCACCCCAT
CCTCGTGCGTGCCGTCCGGCCCACGGGACCGGGAGGGATCAGCCTCCAAG
CCTGAGAAAGGCTACCCGGAGGCGACACCAAGGCCGGTCCCCTTGGCTGA
CATTTCCAACGAGACGTGCTCCATGGAAATGCCCAGCCTGGAGGCggact
ttcctcccccccttgccgaGGGCTTTCGACGTGTCCCCGTCgtcgaaggg
gaggcgggaaggccGTCATCCATCAGGGCCCTGTCTACCGCCAGCCCACA
AGCCCCGAGGGAGGTCTCCCTGCCACTCCACACACTCCACCCTAGGGCTT
CATTTCCTCAGGAAGCTTCCGGGGAAAGAATGCGGCCGTCTAACGACACC
CTTGTGCAGACCAATGTTTCGAGCGAAGGTGCCTCGGGCGGCGGGAGTGC
CCCCGTCAAGGGGAAACGCTCGCGGAATGGAGGGCCTTTGAGAGAGACCT
TGGCGTTGAAAGAGATGGGGAACAAGGCATTGGCGCGGGGTGACCTCGCC
CGTGCCATCCAATACTACTCGGAGGGCATCGAGCGGGACGCGGGTCACCT
GCCGCTCTACAACAACCGGTGCCTGGCCTACCTCAGGCAAGGTCtctggg
aggaggctagGAGGGACGCCAGTCGAGTGCTGGAAAGCGAACCGGAGAAC
ATCAAGGCTCGGTATCGAAGGGGTAAGGCCGCGTGCAGAGCGGCGGAGTC
GCGCGTGGCTCGTGTTGAAGAAGTGCTTGGATCGACAGCAGGCGCGGGCG
AGTCACTGAAGGGCGACCGCGATCCCACGGTGCCTTTAGAAGCAGCCGAG
AAGGCGCTTACTGCGGCCTTGAAGGACCTAGATTGGATTCTAGAAAGGGA
CAAGAAGAACACAGAGGCACAGAAAGAGCAGGGCGTGGCGCGACTCCTTC
TGTCCAAGCTGCAGACCATGCGGCAACCGTCGACCCTGCCAGCAGCACGC
AAGCAGTCCTCCAAAACAAATAAATCTTTGAACTCTCCAGTGCCCGATGT
CGCCCCTTCTGATGGTACCGTGGGAGCATTAATCAAGGAGAATCTGGCCC
AAGAGCCTGAAGACGTGCTGTTGGCGCAGCGGACGGGCTTGGAAGCGAGC
CACGgggcaaggacaggaggaaaaaagggaggagagacaaaAGGTGGATC
TTGGTTTGTGCGGGAAGTATCAACGCAGCCCCGTCAATGCCCCGCGGAGC
CCGTTCGCCGAGTGCGTGTTGTAGAAGAAAGCTGTGGCAGTAGAGACCCT
GTGCCCTGCAGTACGGGCGCTCGGCAACCCAAAGACcgaccctttccccc
tgcaGTTGATGTTCTGAAagtcccgcctccgcctAAAACTGTAACTATGC
TCGAAACTCATTGGCGTACTCTGAAGAAAAGGGGCGACGTTGGCTACCTG
GCAGCTTACCTTCGGGGTTTCAATCCCAAGACTTTCCCGAGAGTTTTCAA
ACGCGTCACCGACCAGGATGTCGTTAACGATGTTTTCTCCGTCACGGCCC
AGGTTTTTTGCCAAGGAAAAGACAAAGGAGACGCCAAAATGGTCTGCAAA
GTATTGGAAGGGATGGCGTGCGTGGAAAGCTTTGAGATGATGAGATTGCT
AATGTCGGACGTGGATAAGGAGAATATCAAGGCGGCCTTCCGCTTCCTGG
AGGAAAGGTCGTCCAGTCTCCCCAATGTACAGGCATCCGGACGGGATAGT
AGAGACATGAAAGATGCAAAAATGGTGTTAGAGGACTTGCGCCGCAAGTA
TTTCCCATAGCGCAGGACACGAGAGGCAACTGTGTAcaatggaaggagag
gacgagagaAAGGTTATCTTTTGTAGGGCCGCAGACAATGTGATAACAGT
AAAAGCCGGACTGGCAAAAAACGAAAAGACGTATCAGATCTCTTCTGTGG
GAAAGTGTGTCGTCTGAGGGAATAGCCTGGGCTCACGCATTGATGTGCCA
GACCACTCTTTCCAAGCGGATTGGTTTCAGATGATGTACGGATGAAGTAG
ATTGTATTAGACAGCAATGTCACGTTTAAGATTCCTTCATTCTCCTCagt
tttccctcctctagATTTCTGATTCTTTGATTGTCAAGCGTGGCAGACGT
GAAGGGGTTCGCCGATATCAATCACGTCGTTTTGCATTTCTTTTATTGCT
ACCTTTCCTGCCATCAGTAATTTGCCTCAAACAACTGTGACTCTTTTGC back to topCoding sequence (CDS) from alignment at KK037249.1:387880..391278+ >rna8605 ID=rna8605|Name=rna8605|organism=Nannochloropsis gaditana|type=CDS|length=2841bp|location=Sequence derived from alignment at KK037249.1:387880..391278+ (Nannochloropsis gaditana)
ATGGACTTGGTTTCCGAGCTGTTCCTCGCAGGACACGAAGACGAGAAGCC
GCCCATTCGTATCACCCCAGCTTTGTTGGATGCAAATTTCATCCAAAGCT
GCGACGATCCCAAGGTCCTCCGAGGCATCTTGCGCAGGCTCAAAAGTGGG
AAAGACGGTCTTTCCGCAGATCTGGAGCGGGAAGTGAAAGACCGGCTGTG
GCTTTTTTCGCCCGCGCAAGTGCGAGGTAAAGTCACGACCCTCCGGGCGC
AAACACCCCCCGAGGAAATTGCGGACGAAGAAGCTCGACTAGAGAAGTGG
ACCGCTGAAATTTGCCAAAGGGACAAGGCCTTGCTGGCGACGGCGGTCGA
GAGCTCCATCGGCGGTGAATTGGTTGACCTTGATCGTCCTAACTCTGACC
GGCTAACTCCCGTCCGGCCGATGAGGACGGTGACGGCAAGCAGGTCGAGG
GTGGTGGGAgccagggaggggacagatTACAGGGCGCCCACGATCGTCTC
ATCCAAGTCTATGCAAGAGGCTCTAGCTCCCAAAGTTGAGGATGgaaacg
aggacgaggaggaggttcgaGCTGCCGAAAGCCTGTTGGCGGCCACCAGG
CAAACGTGCGATTCCCTGCCGGCACAGCGGATGGTCATGGCCGCGTCAtt
aaaggaggaagggaatgcaTTTTTCAAACGAGGTGAGTACGCCAAGGCGC
TTGCCAGTTACACGAAGAGCTTGGGCTTCAATGCGCTAGACCCGGCTGTC
TGCGGGAACCGCGCTCTGGTGTACATGCGGCTAGGGGAGTGGGTGAAGGC
GGAAGTGGACTGCACGCTGGCCATCGCCCGAGATCCTTCCTATGCTAAGG
CATGGTTACGCCGGGGAACGATCCGGCGccagaggggaaagcgggcagaa
gcgaggaaggatcTAGAAGAAGTTCTTcggtggggggcgggaagcatGGA
TGGAAaagtggcgagggaggcccTTGCCTTGCTGCACcagatggacgagg
agggccgggCCTGTAGTCAAGACGGCAAGGATGCCGTGCAAGGATTGAGG
GATGAGACATCGGCTCCAGCCTCCACCCCATCCTCGTGCGTGCCGTCCGG
CCCACGGGACCGGGAGGGATCAGCCTCCAAGCCTGAGAAAGGCTACCCGG
AGGCGACACCAAGGCCGGTCCCCTTGGCTGACATTTCCAACGAGACGTGC
TCCATGGAAATGCCCAGCCTGGAGGCggactttcctcccccccttgccga
GGGCTTTCGACGTGTCCCCGTCgtcgaaggggaggcgggaaggccGTCAT
CCATCAGGGCCCTGTCTACCGCCAGCCCACAAGCCCCGAGGGAGGTCTCC
CTGCCACTCCACACACTCCACCCTAGGGCTTCATTTCCTCAGGAAGCTTC
CGGGGAAAGAATGCGGCCGTCTAACGACACCCTTGTGCAGACCAATGTTT
CGAGCGAAGGTGCCTCGGGCGGCGGGAGTGCCCCCGTCAAGGGGAAACGC
TCGCGGAATGGAGGGCCTTTGAGAGAGACCTTGGCGTTGAAAGAGATGGG
GAACAAGGCATTGGCGCGGGGTGACCTCGCCCGTGCCATCCAATACTACT
CGGAGGGCATCGAGCGGGACGCGGGTCACCTGCCGCTCTACAACAACCGG
TGCCTGGCCTACCTCAGGCAAGGTCtctgggaggaggctagGAGGGACGC
CAGTCGAGTGCTGGAAAGCGAACCGGAGAACATCAAGGCTCGGTATCGAA
GGGGTAAGGCCGCGTGCAGAGCGGCGGAGTCGCGCGTGGCTCGTGTTGAA
GAAGTGCTTGGATCGACAGCAGGCGCGGGCGAGTCACTGAAGGGCGACCG
CGATCCCACGGTGCCTTTAGAAGCAGCCGAGAAGGCGCTTACTGCGGCCT
TGAAGGACCTAGATTGGATTCTAGAAAGGGACAAGAAGAACACAGAGGCA
CAGAAAGAGCAGGGCGTGGCGCGACTCCTTCTGTCCAAGCTGCAGACCAT
GCGGCAACCGTCGACCCTGCCAGCAGCACGCAAGCAGTCCTCCAAAACAA
ATAAATCTTTGAACTCTCCAGTGCCCGATGTCGCCCCTTCTGATGGTACC
GTGGGAGCATTAATCAAGGAGAATCTGGCCCAAGAGCCTGAAGACGTGCT
GTTGGCGCAGCGGACGGGCTTGGAAGCGAGCCACGgggcaaggacaggag
gaaaaaagggaggagagacaaaAGGTGGATCTTGGTTTGTGCGGGAAGTA
TCAACGCAGCCCCGTCAATGCCCCGCGGAGCCCGTTCGCCGAGTGCGTGT
TGTAGAAGAAAGCTGTGGCAGTAGAGACCCTGTGCCCTGCAGTACGGGCG
CTCGGCAACCCAAAGACcgaccctttccccctgcaGTTGATGTTCTGAAa
gtcccgcctccgcctAAAACTGTAACTATGCTCGAAACTCATTGGCGTAC
TCTGAAGAAAAGGGGCGACGTTGGCTACCTGGCAGCTTACCTTCGGGGTT
TCAATCCCAAGACTTTCCCGAGAGTTTTCAAACGCGTCACCGACCAGGAT
GTCGTTAACGATGTTTTCTCCGTCACGGCCCAGGTTTTTTGCCAAGGAAA
AGACAAAGGAGACGCCAAAATGGTCTGCAAAGTATTGGAAGGGATGGCGT
GCGTGGAAAGCTTTGAGATGATGAGATTGCTAATGTCGGACGTGGATAAG
GAGAATATCAAGGCGGCCTTCCGCTTCCTGGAGGAAAGGTCGTCCAGTCT
CCCCAATGTACAGGCATCCGGACGGGATAGTAGAGACATGAAAGATGCAA
AAATGGTGTTAGAGGACTTGCGCCGCAAGTATTTCCCATAG back to top
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