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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100039g34.4424.mrna |
| Orig protein id | gnl|cribi|Naga_100039g34.4424 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:377918..381679 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8602 ID=rna8602|Name=rna8602|organism=Nannochloropsis gaditana|type=mRNA|length=753bp
GGGCTGGCCTTTCCATTGGCCTCTCCTGCCTGACATGGACGCCTCTTCTT
GCTTCATGGCATTGATCAATCTCTGGCAACGATTTATTGCAACTCATGCG
TAATTGTCGGTGCTTCGATGCCTATTATGGGTTCATGAGAGAAATGTGCC
TGCTGCCGGGGACGAGAATCCTTAAGGGGTTTGGATATAAAATCGTTACA
CAAACCATGCCTGAATTCACGATGACTAGAATGTATAGCCGTAAAATTTC
TTTTTATGTAAGACAAATAGATGACTTGACAGAAAAAAATGCGGGAAAAA
ATGTCCGGAAACAAGAGGCCATAGCCAAAGTAACACCTAACTTGACTTCG
GGGTCTCTCTTTTCCGCCAACCATTTTCCTGACTTTGTTTGTATCAATGC
TGTATCCTACGTTGTCATGGTACAGGCATGGTTGTCTACAGTTACAGAGT
ACATTTGTAATGTTCTGTCGCCAAAAAAATAAAAAAAATGACACCATTCA
TTCAAAGTGAGACGCAAATGCAGACGAAACTAAAAATGGAAAGCTTTCAC
GATAGTTGCCTGAATGCAACCGCGAAAGCATGATGGAAATGTGGAAAAAA
AAAGTCAAGCCACCTTCTTATCATTTTTCTAGGGTATAAATGATTTAAAC
GATACTGAGCTACATCAGAACAACCGGGAAAAGGTGTGCCAAGACAGGCT
TATAGAATGGATTTCTCTTCCTCTCAAAAAGCAATATAAAAGCACATGAG
ATG back to topprotein sequence of rna8602 >rna8602-protein ID=rna8602-protein|Name=rna8602|organism=Nannochloropsis gaditana|type=polypeptide|length=911bp
MDHSTAVPASSITSTTNFGGSTGNSVASANTSTIIKTGKPSIMAPGFPSP
PFSLPGASLYGMGFPPPAHSGNATHLPQNLFAPPPGVGGGVMDPFHPQGG
PQQHLHNLHRPGGDMLAAGHSSGGGGGGGGRGRGEQHRGGAARPSEEGPV
VSSGPLVGGTEKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRT
GKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGR
TDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEEDDTEDEDDGGGGR
GGGKFSGVGVSRGGFVSPSPPSTREKDKGRPGSRTGGGLTTISTGLAGIA
GGVRGSGRKSPKALPPAGSRVPSPFSPMAASPGANSGLSPSPNPMMAYQG
LFNKAQMGALVGTGGQANSHAGTRNFSSLPGFPALNAFAPHGPFGSQTPA
HSPPFSNLTSIPAQSPPNFPFFDFNAAAAAAAAAAAGGFPGFPMGAPAGP
SPFSPLNAYQMALFQQQHQQQLQAAHMAMSMQQQQQQQQQQQQQQQQQQQ
QQQQQQHAPAPVPPSRRRASPSAQAKRQQQQEQDLKIPLSSATHPLEGRK
DRQNGSGEKRDGSSPSSLGQALTPQADKAGVGEAGNIQKPSSGSASSTPP
TGHSAFQSTYPGSASSSTGGSHAGSAEKKGAKTTGDETDVLAALVSLGSH
PRSSSSASSSPKASEGGDGSSSSSRVSDSGSVGGEEGPAGGFGGGDKAGV
RASEVEAGARDEGGREKEEGEAGMEGRRREEEESGKTAAEIATGGEVGKE
GGAQERAQEDAGPLSALLGSRREGEKDVGEETCGQEEVGAGAGGGEEWKR
KATSEEMEGSGCGKKLRVGEDDKQGQESVILGMAMGAKKPLAEEEKEGEA
GERVPAKERGQ back to topmRNA from alignment at KK037249.1:377918..381679+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8602 ID=rna8602|Name=rna8602|organism=Nannochloropsis gaditana|type=mRNA|length=3762bp|location=Sequence derived from alignment at KK037249.1:377918..381679+ (Nannochloropsis gaditana)
TGTTGTTTATTGATTGTGTAGAACTTTGATGACTGTGTTGGTTTGGTAAA
AATGTGCCGGTATCCTTGCGCTTATTCATTCTTCGCCTGTATTTTCCCAC
CCGTGTAGAAGAAACAGTCTGAAAACGCACAAGCTCGTGCTTCTGGTTGG
AAATTGAAGCTCAAACGCTCTGCTCAGTATCAGTGTATGGATCATTCGAC
AGCTGTACCAGCCTCGTCCATCACAAGCACAACTAATTTTGGAGGTAGCA
CTGGCAACAGCGTCGCCTCTGCCAACACCAGTACCATCATCAAAACCGGC
AAGCCCAGCATCATGGCGCCTGgatttccttctccgcccttcAGTCTCCC
CGGTGCCTCCCTCTACGGCATgggtttccctccccctgcacaTTCCGGGA
ACGccacccacctccctcaAAATCTCTtcgctcccccgcccggcgTGGGC
GGAGGAGTGATGgaccccttccatccccaggGTGGCCCACAGCAACATTT
GCACAACCTTCACCGCCCTGGTGGAGACATGTTGGCCGCTGGGCACAgca
gtgggggaggcgggggaggcggaggaaggggaagaggcgagcaacatcgg
gggggggctgcccGGCCTTCGGAGGAAGGCCCCGTGGTCTCCTCCGGGCC
ACTGGTGGGCGGGACCGAAAAACGCCGAGCTGTCCGAAAATGGCGGCCGC
AGGAAGACGAGCTCTTGACGGCATTGGTGCGTGAGTACGGAACCAAGCAC
TGGGGCATCATCTGCACCAAATTCGAAGGGAGGACCGGGAAACAGTGCCG
GGAGCGGTGGCACAACCAGTTGGATCCGCACATCAAGAAAGATGCTTGGA
ccaaggatgaggaggatttgCTGTTGAAGGCACACGCACAGTTCGGAAAT
CGGTGGGCTGAGATTGCCAAGGTATTGCCGGGGCGGACGGACAACGCGAT
CAAGAACAGGTTTGTTGGGGGGTTGCAGGgtccgaggaagggagagaggg
ggcgagggcgggcttgtggtcgggaaggaaggtagCGTTGGGGGGGTTGG
AAGATGGGTTGGACGAGCCGGGTCGCTACGTGTACAAAGGCGCGTGTCCT
CAATGCGGGGAAAAAATGTTTGCAAGAAAGGACCTAGAGACTGATTGGGG
CCCCCCCGGAGTTCTCACTTTCCCGCTTTCcttcaccgcctcccccgcag
ATGGAACTCGGCCAAGCGCCGGCTCTCCCGCCAATCATACCCagacgggg
acgggggcgaggacgacgatgactcggcctcggaggaggatgacacggag
gacgaagacgacgggggcggaggccggggcggtgGGAAATTCTCGGGCGT
CGGGGTTTCCCGCGGGGGCTTtgtgtctccttccccgccctcgacgaggg
agaaggacaaggggcGGCCCGGCAGccggacgggagggggatTGACCACC
ATCAGCACGGGCCTGGCGGGCATCGCGGGCGGTGTCAGGGGAAGTGGCCG
CAAAAGTcccaaggccctcccccccgccgggagccgcgtcccctcccctt
tctccccaatggccgcctccccggggGCCAACAGCGGACTCTCGCCGTCC
CCCAACCCTATGATGGCCTACCAAGGACTCTTCAACAAGGCGCAGATGGG
CGCCTtggtggggacggggggacAAGCGAACTCTCACGCAGGCACGAGGA
acttctcttccttgccggGCTTTCCCGCCTTGAACGCTTTTGCCCCACAC
GGTCCTTTCGGCTCCCAGACCCCCGCCCActcgcctcccttctccaatTT
GACGTCCATACCGGCCCAGAGCCCCCCCaatttccctttctttgaTTTCa
atgccgctgccgccgccgctgccgccgccgccgccggggGCTTCCCCGGC
TTCCCAATGGGTGCTCCCGCGGGCCCCagccccttctctcccttgaATGC
CTACCAGATGGCTCTCTTCCAGCAGCAACATCAGCAACAGCTCCAGGCGG
CGCACATGGCCATGTCCatgcaacaacaacaacaacaacaacaacaacaa
cagcaacagcaacagcaacagcagcaacagcaacaacagcaacaacatgC
ACCCGCGcctgtccccccttcccgccgacGCGCCTCTCCCAGCGCGCAAG
CCAAGCGGCAACaacagcaggagcaggaccTGAAaatccccctctcctct
gccaCTCATCCCCTGGAAGGCCGGAAAGACCGCCAGAACGGGagcgggga
gaagagggacgggtcatctccctcctccttgggccAGGCCCTGACTCCGC
AGGCGGACAAAGCGGGCGttggggaggcagggaataTTCAAAAACCGTCC
TCAGGCTCCGCCAGCTCCACACCCCCCACCGGTCACTCCGCCTTTCAGAG
CACGTATCCAGGGAGCGCTAGCAGCAGCACGGGCGGGAGCCATGCTGGGA
GcgcggagaagaaaggggccaAGACCACGGGGGATGAGACGGACGTCCTG
GCTGCCTTGGTCTCGCTTGGGAGCCACCcgcgatcctcctcctccgcctc
gagctCGCCCAAGGcgtcggagggcggggacggaagcagcagcagcagcc
gggTGAGCGACAGTGGGagtgtggggggggaggagggaccggcCGGGGGC
Ttcggagggggggacaaggcgggggtcagggcctcggaggtggaagcggg
ggcgagggacgaaggaggaagggagaaggaggagggggaggcgggtatgg
agggcaggaggcgggaggaggaggaatcggGGAAGACGGCTGCCGAGATT
GCTACcggcggggaggtggggaaggagggaggggcccaggAGAGGGCTCA
GGAGGATGCTGGCCCGCTTTCCGCCCTACTGGGatccaggagggaagggg
aaaaggacgtgggcgaggaaacatgcgggcaggaggaggtgggtgccggc
gcggggggcggggaggaatggaaacgCAAGGCTACTTccgaggaaatgga
gggatcAGGCTGCGGCAAAAAACTCCgggtaggggaggacgaTAAGCAGG
GGCAGGAAAGCGTCATACTGGGCATGGCGATGGGTGCGAAAAAGCcgttg
gcggaggaggagaaggagggggaggcgggcgagcggGTCCCGGCCAAAGA
ACGTGGGCAGTAGGATCGATGCAAGGAGGGTCAGCTCCAtccaggaggga
agacgagagaGGTGTGCTAGGCTCAAGGGCAGCTTGTCCAtcggagggac
agggcacgggggggggaaattggGGGGATATGGTACGACAGCCATgtatg
ggaaggaagaagcttCTGTTGGCCCACGTCGTcgctctttgcctcctcca
cggcttCTGTGACGATGACCGGACGTGGATGTCGTAAGTAAATATGTTGA
TGTGTCTGTCATCTTCTTAATTGCGTGagaagacagggaaggaaTATTGA
ATTCATGCTTTCTATCGAAAAACACGAGAATAaaacgaaggggaggcatG
GTGCTTTGAGGCCTGTGGAAGGTCCATGCAGCAGTGTTCTTCCTAGAGAT
CGAAGGCGTAAAGGGAGAATGTTCGAGAAAAGAAGACCGACGACGACTAG
AAGAGGTGCGGCGTGGAGACGTGCGTAAGGGGTCGAAATTTCTTTTCTGT
TTTCGAGGAATGAGATTCTCACaccaagaggaagcggaggccaTCGACCG
AGAGGCATCCCCCTCTTGATTGGCATACTATCTTGTTATAAACACCACGG
TCACCCAAGTTC back to topCoding sequence (CDS) from alignment at KK037249.1:377918..381679+ >rna8602 ID=rna8602|Name=rna8602|organism=Nannochloropsis gaditana|type=CDS|length=5472bp|location=Sequence derived from alignment at KK037249.1:377918..381679+ (Nannochloropsis gaditana)
ATGGATCATTCGACAGCTGTACCAGCCTCGTCCATCACAAGCACAACTAA
TTTTGGAGGTAGCACTGGCAACAGCGTCGCCTCTGCCAACACCAGTACCA
TCATCAAAACCGGCAAGCCCAGCATCATGGCGCCTGgatttccttctccg
cccttcAGTCTCCCCGGTGCCTCCCTCTACGGCATgggtttccctccccc
tgcacaTTCCGGGAACGccacccacctccctcaAAATCTCTtcgctcccc
cgcccggcgTGGGCGGAGGAGTGATGgaccccttccatccccaggGTGGC
CCACAGCAACATTTGCACAACCTTCACCGCCCTGGTGGAGACATGTTGGC
CGCTGGGCACAgcagtgggggaggcgggggaggcggaggaaggggaagag
gcgagcaacatcgggggggggctgcccGGCCTTCGGAGGAAGGCCCCGTG
GTCTCCTCCGGGCCACTGGTGGGCGGGACCGAAAAACGCCGAGCTGTCCG
AAAATGGCGGCCGCAGGAAGACGAGCTCTTGACGGCATTGGTGCGTGAGT
ACGGAACCAAGCACTGGGGCATCATCTGCACCAAATTCGAAGGGAGGACC
GGGAAACAGTGCCGGGAGCGGTGGCACAACCAGTTGGATCCGCACATCAA
GAAAGATGCTTGGAccaaggatgaggaggatttgCTGTTGAAGGCACACG
CACAGTTCGGAAATCGGTGGGCTGAGATTGCCAAGGTATTGCCGGGGCGG
ACGGACAACGCGATCAAGAACAGATGGAACTCGGCCAAGCGCCGGCTCTC
CCGCCAATCATACCCagacggggacgggggcgaggacgacgatgactcgg
cctcggaggaggatgacacggaggacgaagacgacgggggcggaggccgg
ggcggtgGGAAATTCTCGGGCGTCGGGGTTTCCCGCGGGGGCTTtgtgtc
tccttccccgccctcgacgagggagaaggacaaggggcGGCCCGGCAGcc
ggacgggagggggatTGACCACCATCAGCACGGGCCTGGCGGGCATCGCG
GGCGGTGTCAGGGGAAGTGGCCGCAAAAGTcccaaggccctcccccccgc
cgggagccgcgtcccctcccctttctccccaatggccgcctccccggggG
CCAACAGCGGACTCTCGCCGTCCCCCAACCCTATGATGGCCTACCAAGGA
CTCTTCAACAAGGCGCAGATGGGCGCCTtggtggggacggggggacAAGC
GAACTCTCACGCAGGCACGAGGAacttctcttccttgccggGCTTTCCCG
CCTTGAACGCTTTTGCCCCACACGGTCCTTTCGGCTCCCAGACCCCCGCC
CActcgcctcccttctccaatTTGACGTCCATACCGGCCCAGAGCCCCCC
CaatttccctttctttgaTTTCaatgccgctgccgccgccgctgccgccg
ccgccgccggggGCTTCCCCGGCTTCCCAATGGGTGCTCCCGCGGGCCCC
agccccttctctcccttgaATGCCTACCAGATGGCTCTCTTCCAGCAGCA
ACATCAGCAACAGCTCCAGGCGGCGCACATGGCCATGTCCatgcaacaac
aacaacaacaacaacaacaacaacagcaacagcaacagcaacagcagcaa
cagcaacaacagcaacaacatgCACCCGCGcctgtccccccttcccgccg
acGCGCCTCTCCCAGCGCGCAAGCCAAGCGGCAACaacagcaggagcagg
accTGAAaatccccctctcctctgccaCTCATCCCCTGGAAGGCCGGAAA
GACCGCCAGAACGGGagcggggagaagagggacgggtcatctccctcctc
cttgggccAGGCCCTGACTCCGCAGGCGGACAAAGCGGGCGttggggagg
cagggaataTTCAAAAACCGTCCTCAGGCTCCGCCAGCTCCACACCCCCC
ACCGGTCACTCCGCCTTTCAGAGCACGTATCCAGGGAGCGCTAGCAGCAG
CACGGGCGGGAGCCATGCTGGGAGcgcggagaagaaaggggccaAGACCA
CGGGGGATGAGACGGACGTCCTGGCTGCCTTGGTCTCGCTTGGGAGCCAC
CcgcgatcctcctcctccgcctcgagctCGCCCAAGGcgtcggagggcgg
ggacggaagcagcagcagcagccgggTGAGCGACAGTGGGagtgtggggg
gggaggagggaccggcCGGGGGCTtcggagggggggacaaggcgggggtc
agggcctcggaggtggaagcgggggcgagggacgaaggaggaagggagaa
ggaggagggggaggcgggtatggagggcaggaggcgggaggaggaggaat
cggGGAAGACGGCTGCCGAGATTGCTACcggcggggaggtggggaaggag
ggaggggcccaggAGAGGGCTCAGGAGGATGCTGGCCCGCTTTCCGCCCT
ACTGGGatccaggagggaaggggaaaaggacgtgggcgaggaaacatgcg
ggcaggaggaggtgggtgccggcgcggggggcggggaggaatggaaacgC
AAGGCTACTTccgaggaaatggagggatcAGGCTGCGGCAAAAAACTCCg
ggtaggggaggacgaTAAGCAGGGGCAGGAAAGCGTCATACTGGGCATGG
CGATGGGTGCGAAAAAGCcgttggcggaggaggagaaggagggggaggcg
ggcgagcggGTCCCGGCCAAAGAACGTGGGCAGTAGATGGATCATTCGAC
AGCTGTACCAGCCTCGTCCATCACAAGCACAACTAATTTTGGAGGTAGCA
CTGGCAACAGCGTCGCCTCTGCCAACACCAGTACCATCATCAAAACCGGC
AAGCCCAGCATCATGGCGCCTGgatttccttctccgcccttcAGTCTCCC
CGGTGCCTCCCTCTACGGCATgggtttccctccccctgcacaTTCCGGGA
ACGccacccacctccctcaAAATCTCTtcgctcccccgcccggcgTGGGC
GGAGGAGTGATGgaccccttccatccccaggGTGGCCCACAGCAACATTT
GCACAACCTTCACCGCCCTGGTGGAGACATGTTGGCCGCTGGGCACAgca
gtgggggaggcgggggaggcggaggaaggggaagaggcgagcaacatcgg
gggggggctgcccGGCCTTCGGAGGAAGGCCCCGTGGTCTCCTCCGGGCC
ACTGGTGGGCGGGACCGAAAAACGCCGAGCTGTCCGAAAATGGCGGCCGC
AGGAAGACGAGCTCTTGACGGCATTGGTGCGTGAGTACGGAACCAAGCAC
TGGGGCATCATCTGCACCAAATTCGAAGGGAGGACCGGGAAACAGTGCCG
GGAGCGGTGGCACAACCAGTTGGATCCGCACATCAAGAAAGATGCTTGGA
ccaaggatgaggaggatttgCTGTTGAAGGCACACGCACAGTTCGGAAAT
CGGTGGGCTGAGATTGCCAAGGTATTGCCGGGGCGGACGGACAACGCGAT
CAAGAACAGATGGAACTCGGCCAAGCGCCGGCTCTCCCGCCAATCATACC
Cagacggggacgggggcgaggacgacgatgactcggcctcggaggaggat
gacacggaggacgaagacgacgggggcggaggccggggcggtgGGAAATT
CTCGGGCGTCGGGGTTTCCCGCGGGGGCTTtgtgtctccttccccgccct
cgacgagggagaaggacaaggggcGGCCCGGCAGccggacgggaggggga
tTGACCACCATCAGCACGGGCCTGGCGGGCATCGCGGGCGGTGTCAGGGG
AAGTGGCCGCAAAAGTcccaaggccctcccccccgccgggagccgcgtcc
cctcccctttctccccaatggccgcctccccggggGCCAACAGCGGACTC
TCGCCGTCCCCCAACCCTATGATGGCCTACCAAGGACTCTTCAACAAGGC
GCAGATGGGCGCCTtggtggggacggggggacAAGCGAACTCTCACGCAG
GCACGAGGAacttctcttccttgccggGCTTTCCCGCCTTGAACGCTTTT
GCCCCACACGGTCCTTTCGGCTCCCAGACCCCCGCCCActcgcctccctt
ctccaatTTGACGTCCATACCGGCCCAGAGCCCCCCCaatttccctttct
ttgaTTTCaatgccgctgccgccgccgctgccgccgccgccgccggggGC
TTCCCCGGCTTCCCAATGGGTGCTCCCGCGGGCCCCagccccttctctcc
cttgaATGCCTACCAGATGGCTCTCTTCCAGCAGCAACATCAGCAACAGC
TCCAGGCGGCGCACATGGCCATGTCCatgcaacaacaacaacaacaacaa
caacaacaacagcaacagcaacagcaacagcagcaacagcaacaacagca
acaacatgCACCCGCGcctgtccccccttcccgccgacGCGCCTCTCCCA
GCGCGCAAGCCAAGCGGCAACaacagcaggagcaggaccTGAAaatcccc
ctctcctctgccaCTCATCCCCTGGAAGGCCGGAAAGACCGCCAGAACGG
GagcggggagaagagggacgggtcatctccctcctccttgggccAGGCCC
TGACTCCGCAGGCGGACAAAGCGGGCGttggggaggcagggaataTTCAA
AAACCGTCCTCAGGCTCCGCCAGCTCCACACCCCCCACCGGTCACTCCGC
CTTTCAGAGCACGTATCCAGGGAGCGCTAGCAGCAGCACGGGCGGGAGCC
ATGCTGGGAGcgcggagaagaaaggggccaAGACCACGGGGGATGAGACG
GACGTCCTGGCTGCCTTGGTCTCGCTTGGGAGCCACCcgcgatcctcctc
ctccgcctcgagctCGCCCAAGGcgtcggagggcggggacggaagcagca
gcagcagccgggTGAGCGACAGTGGGagtgtggggggggaggagggaccg
gcCGGGGGCTtcggagggggggacaaggcgggggtcagggcctcggaggt
ggaagcgggggcgagggacgaaggaggaagggagaaggaggagggggagg
cgggtatggagggcaggaggcgggaggaggaggaatcggGGAAGACGGCT
GCCGAGATTGCTACcggcggggaggtggggaaggagggaggggcccaggA
GAGGGCTCAGGAGGATGCTGGCCCGCTTTCCGCCCTACTGGGatccagga
gggaaggggaaaaggacgtgggcgaggaaacatgcgggcaggaggaggtg
ggtgccggcgcggggggcggggaggaatggaaacgCAAGGCTACTTccga
ggaaatggagggatcAGGCTGCGGCAAAAAACTCCgggtaggggaggacg
aTAAGCAGGGGCAGGAAAGCGTCATACTGGGCATGGCGATGGGTGCGAAA
AAGCcgttggcggaggaggagaaggagggggaggcgggcgagcggGTCCC
GGCCAAAGAACGTGGGCAGTAG back to top
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