EWM22086.1, cds8575 (CDS) Nannochloropsis gaditana

Overview
NameEWM22086.1
Unique Namecds8575
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:378104..378876 +
Alignment locationKK037249.1:379118..381080 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22086.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100039g34.4424.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:378104..378876 +
KK037249.1supercontigKK037249.1:379118..381080 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|585102503|gb|EWM22086.1| (hypothetical protein Naga_100039g34 [Nannochloropsis gaditana])

HSP 1 Score: 1812.74 bits (4694), Expect = 0.000e+0
Identity = 911/911 (100.00%), Postives = 911/911 (100.00%), Query Frame = 0
Query:    1 MDHSTAVPASSITSTTNFGGSTGNSVASANTSTIIKTGKPSIMAPGFPSPPFSLPGASLYGMGFPPPAHSGNATHLPQNLFAPPPGVGGGVMDPFHPQGGPQQHLHNLHRPGGDMLAAGHSSGGGGGGGGRGRGEQHRGGAARPSEEGPVVSSGPLVGGTEKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEEDDTEDEDDGGGGRGGGKFSGVGVSRGGFVSPSPPSTREKDKGRPGSRTGGGLTTISTGLAGIAGGVRGSGRKSPKALPPAGSRVPSPFSPMAASPGANSGLSPSPNPMMAYQGLFNKAQMGALVGTGGQANSHAGTRNFSSLPGFPALNAFAPHGPFGSQTPAHSPPFSNLTSIPAQSPPNFPFFDFNAAAAAAAAAAAGGFPGFPMGAPAGPSPFSPLNAYQMALFQQQHQQQLQAAHMAMSMQQQQQQQQQQQQQQQQQQQQQQQQQHAPAPVPPSRRRASPSAQAKRQQQQEQDLKIPLSSATHPLEGRKDRQNGSGEKRDGSSPSSLGQALTPQADKAGVGEAGNIQKPSSGSASSTPPTGHSAFQSTYPGSASSSTGGSHAGSAEKKGAKTTGDETDVLAALVSLGSHPRSSSSASSSPKASEGGDGSSSSSRVSDSGSVGGEEGPAGGFGGGDKAGVRASEVEAGARDEGGREKEEGEAGMEGRRREEEESGKTAAEIATGGEVGKEGGAQERAQEDAGPLSALLGSRREGEKDVGEETCGQEEVGAGAGGGEEWKRKATSEEMEGSGCGKKLRVGEDDKQGQESVILGMAMGAKKPLAEEEKEGEAGERVPAKERGQ 911
            MDHSTAVPASSITSTTNFGGSTGNSVASANTSTIIKTGKPSIMAPGFPSPPFSLPGASLYGMGFPPPAHSGNATHLPQNLFAPPPGVGGGVMDPFHPQGGPQQHLHNLHRPGGDMLAAGHSSGGGGGGGGRGRGEQHRGGAARPSEEGPVVSSGPLVGGTEKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEEDDTEDEDDGGGGRGGGKFSGVGVSRGGFVSPSPPSTREKDKGRPGSRTGGGLTTISTGLAGIAGGVRGSGRKSPKALPPAGSRVPSPFSPMAASPGANSGLSPSPNPMMAYQGLFNKAQMGALVGTGGQANSHAGTRNFSSLPGFPALNAFAPHGPFGSQTPAHSPPFSNLTSIPAQSPPNFPFFDFNAAAAAAAAAAAGGFPGFPMGAPAGPSPFSPLNAYQMALFQQQHQQQLQAAHMAMSMQQQQQQQQQQQQQQQQQQQQQQQQQHAPAPVPPSRRRASPSAQAKRQQQQEQDLKIPLSSATHPLEGRKDRQNGSGEKRDGSSPSSLGQALTPQADKAGVGEAGNIQKPSSGSASSTPPTGHSAFQSTYPGSASSSTGGSHAGSAEKKGAKTTGDETDVLAALVSLGSHPRSSSSASSSPKASEGGDGSSSSSRVSDSGSVGGEEGPAGGFGGGDKAGVRASEVEAGARDEGGREKEEGEAGMEGRRREEEESGKTAAEIATGGEVGKEGGAQERAQEDAGPLSALLGSRREGEKDVGEETCGQEEVGAGAGGGEEWKRKATSEEMEGSGCGKKLRVGEDDKQGQESVILGMAMGAKKPLAEEEKEGEAGERVPAKERGQ
Sbjct:    1 MDHSTAVPASSITSTTNFGGSTGNSVASANTSTIIKTGKPSIMAPGFPSPPFSLPGASLYGMGFPPPAHSGNATHLPQNLFAPPPGVGGGVMDPFHPQGGPQQHLHNLHRPGGDMLAAGHSSGGGGGGGGRGRGEQHRGGAARPSEEGPVVSSGPLVGGTEKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEEDDTEDEDDGGGGRGGGKFSGVGVSRGGFVSPSPPSTREKDKGRPGSRTGGGLTTISTGLAGIAGGVRGSGRKSPKALPPAGSRVPSPFSPMAASPGANSGLSPSPNPMMAYQGLFNKAQMGALVGTGGQANSHAGTRNFSSLPGFPALNAFAPHGPFGSQTPAHSPPFSNLTSIPAQSPPNFPFFDFNAAAAAAAAAAAGGFPGFPMGAPAGPSPFSPLNAYQMALFQQQHQQQLQAAHMAMSMQQQQQQQQQQQQQQQQQQQQQQQQQHAPAPVPPSRRRASPSAQAKRQQQQEQDLKIPLSSATHPLEGRKDRQNGSGEKRDGSSPSSLGQALTPQADKAGVGEAGNIQKPSSGSASSTPPTGHSAFQSTYPGSASSSTGGSHAGSAEKKGAKTTGDETDVLAALVSLGSHPRSSSSASSSPKASEGGDGSSSSSRVSDSGSVGGEEGPAGGFGGGDKAGVRASEVEAGARDEGGREKEEGEAGMEGRRREEEESGKTAAEIATGGEVGKEGGAQERAQEDAGPLSALLGSRREGEKDVGEETCGQEEVGAGAGGGEEWKRKATSEEMEGSGCGKKLRVGEDDKQGQESVILGMAMGAKKPLAEEEKEGEAGERVPAKERGQ 911          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|299115109|emb|CBN75476.1| (putative c-myb-like transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 175.637 bits (444), Expect = 2.633e-42
Identity = 87/155 (56.13%), Postives = 101/155 (65.16%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKF----EGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEE--DDTEDEDDGGGGRGGGKFSGVG 309
            +++R VRKW  QED  +  LV E G K WG+I ++     E RTGKQCRERWHNQLDP IKKD WTK EED L++AH+  GN+WAEIAK+LPGRTDNAIKN WNSAKRRLSRQ         D   S S    D+ E   D GGG    +  G G
Sbjct:   18 KRKRCVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGEDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLSRQLNMSVSSVLDRRRSVSSSGGDEEEPHPDRGGGPAASEGCGAG 172          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|1214700878|gb|OWZ13371.1| (Myb-like DNA-binding protein [Phytophthora megakarya])

HSP 1 Score: 165.236 bits (417), Expect = 8.702e-41
Identity = 84/164 (51.22%), Postives = 106/164 (64.63%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSRQSYPDGDGGEDDDDSASEEDDTED--EDDGGGGRGGGKFSGVGVSRGGFVSPSPPS 322
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE LL + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R + P     +  D S SE   + D  E    G  G    + +   +  F S  P S
Sbjct:   23 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTSDEEQLLKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRGNRPTASQRKCRDSSGSESSFSGDLPEIPSPGSLGINPLNPLLTDQLDFTSLYPTS 186          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|570990459|gb|ETP48411.1| (hypothetical protein F442_05841 [Phytophthora parasitica P10297])

HSP 1 Score: 162.54 bits (410), Expect = 1.074e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|568053489|gb|ETM50316.1| (hypothetical protein L914_05605 [Phytophthora parasitica])

HSP 1 Score: 162.54 bits (410), Expect = 1.106e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|566027727|gb|ETI50638.1| (hypothetical protein F443_05796 [Phytophthora parasitica P1569])

HSP 1 Score: 162.155 bits (409), Expect = 1.394e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|970651509|gb|KUF90316.1| (Myb-related protein B [Phytophthora nicotianae])

HSP 1 Score: 162.155 bits (409), Expect = 1.412e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   23 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 130          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|675188847|ref|XP_008903308.1| (hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310] >gi|568023098|gb|ETL97162.1| hypothetical protein L917_05487 [Phytophthora parasitica] >gi|568096770|gb|ETN11517.1| hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310])

HSP 1 Score: 162.155 bits (409), Expect = 1.421e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|301123585|ref|XP_002909519.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262100281|gb|EEY58333.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 162.155 bits (409), Expect = 1.440e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED L+  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT +EE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   27 KERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 134          
BLAST of EWM22086.1 vs. NCBI_GenBank
Match: gi|567965126|gb|ETK90599.1| (hypothetical protein L915_05663 [Phytophthora parasitica] >gi|567993842|gb|ETL44010.1| hypothetical protein L916_05601 [Phytophthora parasitica] >gi|570331513|gb|ETO79461.1| hypothetical protein F444_05844 [Phytophthora parasitica P1976] >gi|570955226|gb|ETP20412.1| hypothetical protein F441_05801 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 162.155 bits (409), Expect = 1.691e-40
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:  161 EKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLSR 268
            ++R+ V KW  +ED ++  LV++YGT+HW II TK  GR GKQCRERWHNQLDP I+K+ WT DEE +L + H +FGN+WAEIAK+LPGRTDNAIKN WNS+KRRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
The following BLAST results are available for this feature:
BLAST of EWM22086.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102503|gb|EWM22086.1|0.000e+0100.00hypothetical protein Naga_100039g34 [Nannochlorops... [more]
gi|299115109|emb|CBN75476.1|2.633e-4256.13putative c-myb-like transcription factor [Ectocarp... [more]
gi|1214700878|gb|OWZ13371.1|8.702e-4151.22Myb-like DNA-binding protein [Phytophthora megakar... [more]
gi|570990459|gb|ETP48411.1|1.074e-4064.81hypothetical protein F442_05841 [Phytophthora para... [more]
gi|568053489|gb|ETM50316.1|1.106e-4064.81hypothetical protein L914_05605 [Phytophthora para... [more]
gi|566027727|gb|ETI50638.1|1.394e-4064.81hypothetical protein F443_05796 [Phytophthora para... [more]
gi|970651509|gb|KUF90316.1|1.412e-4064.81Myb-related protein B [Phytophthora nicotianae][more]
gi|675188847|ref|XP_008903308.1|1.421e-4064.81hypothetical protein PPTG_10384 [Phytophthora para... [more]
gi|301123585|ref|XP_002909519.1|1.440e-4064.81myb-like DNA-binding protein, putative [Phytophtho... [more]
gi|567965126|gb|ETK90599.1|1.691e-4064.81hypothetical protein L915_05663 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8602rna8602Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications