rna8598, rna8598 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8598
Unique Name	rna8598
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4118
Alignment location	KK037249.1:371558..372741 +

Link to JBrowse

Properties


Property Name	Value
Product	Basic-leucine zipper domain protein
Orig transcript id	gnl\|cribi\|Naga_100039g39.4415.mrna
Orig protein id	gnl\|cribi\|Naga_100039g39.4415
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:371558..372741 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g39	gene8333	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8598	rna8598-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22077.1	cds8571	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:371558..372741+
coding sequence from alignment at KK037249.1:371558..372741+

mRNA sequence

>rna8598 ID=rna8598|Name=rna8598|organism=Nannochloropsis gaditana|type=mRNA|length=4118bp
TGGGACCTTGTCGGGACGGAGCCATTACTGACACCTACCTTTTTTTCGCA
CAGGTGGATCGTGGGGACGGGTGAGGGTTTATGAGGCGCGCGTTGCTCCT
GCTGGGGCCGTTGCTTGCCGCGTGCGTGGCTGTGGCAGAGTCACGGGGCA
CCGGTCAGTGGAATGCCGCAGACTCTTTGGTGTTTTCACACGACGCCACC
CCACCCGATGTCCCCGCTGTTGCTCTGTCTAGTTATGGACATCGAATTTT
GCCGGAAGCTGGCCTCCATTCGGTTTTCGATCCGACCGTGGGCCCCGTCA
TTGGCGTTTTGGCCCAACCCAAGTTTTCCAACCTCGCTCCTTGTGACGGG
GTCTGCGAATACATTGCAGCCAGCTACGTGAAATGGGTGGAGAGCGCAGG
GGGGCGCGTCCTGCCCGTGCCGTACAATGCCTCCTTTGACGCCCTTGATG
CCATTTTTGCATCCGTGAACGGACTGCTCTTTCCGGGGGGTAGCAATGTG
CTGTCGGTGGGGGCAAAGCACCTGTTTTCGCGGGCCCGCGAGGCCCACGA
GGCAGGGGATTACTTCCCTGTGTGGGGAACGTGCCTGGGATTGGAATGGA
TGGTGGAAGCCGTCTGCGCGGAGGCTGTGAGCAAAGACCCCGAGGCCCCC
CGCTTTGTCATCGACACGGGCTACGACGCCTGGAACTTGACGCTCCCGCT
ATCCTTCACCGAGGCCGCGAAGACGAGCCGGCTCTTCCACGAGTTGCCTC
CTGCCCTCTGGGACGCGGCGGCGGCGGAGCACTTGACCATGAACAACCAC
CACAAGGGCGTCGCTCCCGCCCACCTGGCGGCCACGCCTGCCCTATCCGA
GGCCTTCACGGTCATTTCCACGGACTTGGACCGATCCGGGACGCCCTTTG
TCTCGACCTTAGAAGGGAAGGATGGGCGGCCCTGGTATGGCGTGCAGTTC
CACCCGGAAAAGGCAATATTTGAGTGGGGCGTGGCGGGGGGGGAGGACGG
GGGGGAGGCGTGGCCCTTCGAGGCCACCAACCACTCGCTGGCCGCCCAGA
ACCTGGCCCGGTACCTAGCGGATTTTTTTGTGGGGGAAGCCCGGAAGAAC
CGCCACGCGTTCCCCGAGACGGAGGGGCCGACCGCCTTGAGCTGGGGCTA
CCCCCGTGTGTACTCGGGCCCGGACTTTGTGGAGTCCTACTTCATTCGTC
ACTTCCACTACCCCCCGGACCCGGCGCCCGGCGCGAGAGTGACGGAAAGC
GAGGGTGAGGGAAGGGGAGGCCCGAGAAGCGGGGATGGGGAGGAGGTTCG
GGCGGAGGTAGGGAGCAGCAAGAGTCGTCTGCGGGGGCACGGCTCTGGCC
CCGGCCTCTGGACAGTGGCATCTTGACCGCCGCGAGAGGATGGTGTAGGC
GATAGACGCATCCCTTGGGGTGGCGCGTGATTGTTAGTATATTTGCGGAG
GGCGTGCCCCTTGGGGTGATTGTTAGTAAGATTGCGGAGGGCGTACCCCT
TGCGGTGATGCGTGAAGTACCATGCCATGCACATGGGGAAGTGTGCGAAG
AAGAAAGGGAGCGAGCTCCCCATGGAATGAGCAGAAGCCATGGTGCCTTT
ACCGAACGACGGGACGCATCTTTGTGTCCAGTCATTGCTCCGATTGTACT
TTGTGGGCCTTTAGCGCGCTTTCAGCTTCCCCCCCCTCCCTCCCTTCCCC
TCCCTGTTCCCAGGATTTGACGCATCGCCTTGGCGATCTTCCTCTCCACA
GACCCCACCGTCAAGGCTCCTACCACCATCACACCTACCAGGTACACCAC
AGGCACTTGCCCCCCCTTGTAACGGGCCAAGAAGGCGCCCACCTGGTGAT
CGCAAACCATGGCACATGCCCTCTCCCACGCCAACCCCACCCCACCTCCC
ACACCCGCCCCGACCAAGATTTGTGCGGACGTGTGCAGACCTGAGAAGAC
TCTCCAAGCGCTTGCGACAGAGACATAGAGGCCGCCCAAGGCAATGGTGG
GCAGGACATCCAAAGGCCACCAGGGCGGGAGCACCCCGATCCCCCTCTTT
TGGCACAGCGCGCTCCCAAGGAAAGCAGACATGTAGAACAAGGCCATGGC
GTGGGAGCTAGGCATACCTGGATCCTCCAGGACCGCGCCGTCTGGTCGAG
CTTCTTTGATAAGACGTTTTAAGATTTTTCCAAGCATGGCATTCAGAATA
GCCCCTACTGTGAAGTTGACAATCGCGGCGTCCCGCCGGACTAGAAGCAT
GACGGCTACCAAGCTGGCTACAGTCCAGCGAGTGGACTTTCCTAGTAGTT
GGAAGGCCTGGAGAGAGCTGGTTTTGAAGGACATAAGGGAGGAGGGTGGG
GGGGAGGACCCCCTGAGGGGCCCCTGAGTAGGGGAAGCGTGAGGATCTCT
CAAGCTCATTTCGGAACTGCGGCCGTGAAAGCGAAGCATCGCTAGGCCAC
GTGGCAGAGATATTACGTCTCGATGGAATGTTTTACACGGTCTTGAAATA
AAATTGCCGGGCTTGAACGTTACAAAACCCGAGGTTTTGCGGGGAAATGA
CGCGGAGGCGATGGCTGAGAGGAGGAAAACGATGATGGTTGTGTAGCCAC
AAATGCTCCCCTTAGTGAATGTCCGATGCAAAGAAGAAGGGTCTGAGCAG
ACAGCCATAAATTCTAAGGCTGTTGGTGTGCGTGCGAGGGTAAGCGGCAT
TCGTAATACGTGCAAACGCTATCGCCTTGGTGCTTGAGGCCAGCAACGGC
TTCAAGGGCGAAGAGACTGCTTCAACTCGAACGTCCCCCATGACTATTCA
TTTTACCAAAACAAAACGACACATGCATTACCACATGCAGGAAAGAGACT
CCTAGTTTTTCAATCCATGTACCAGGTACAAGTCAGAGGCACGCATTCGT
CGCGGTCCTCGAACTAGAGCTTTTTCTCTTCGAGGTCGCCCCTCTGAGCC
GCCTTCCGCTCATGTTGAGGTCCCCTCTCCTGGTACCCGTCATCAATTTA
ACCTTCTTCCTTCTGGCGCTCCCTGCTCCTCTCCCACCGATCTGCTACCG
ACGACTCGCCACTTTTTCTCGCAGGCAAGGAGGCGCGATACGGAGAAGAG
CAGAGTCTTCAAACATCAGCTCACAGCAGACAGGAGCGTGCGGACAAGAG
GCGTCAAGCATATCATCAGTCCAGAGCCGCAACGATCTTGTGGCGGCAAA
GAAGACGAAAATGGCTAAAATTGAGGCGAAGAAGGCGCTGATGACCAGCG
CTCGGAGAGAAAGGATGCGCCGACATCGTCGTAAGAAAGAGTTGCAAGCA
CGAAACATGACCCGTGCCGAACGCGAAGCTAGACAGGAGAGAGAGGCGCG
AGTGGCAGCGTGGTTGGAGTCGATCTACGAAGAAGACGCCGATCTGAGCG
CTCATGCCGTGTCCCCACGGCTGCGCATCGCCATAGATCTAGCCTATGAT
GCATCCTCCAGCCTGTACTCCTCTCTGGCCCGTCAATTGGGCTGCGTCTA
TGGGCTCATGCGGCGGGCGGGGGAGCCGGGGCTCGTCCCGAGCGTGCACC
TGACTGCGGCCAAGGGGGACGTGCTGGAGGCCTTGGAGGCCAGCGGCGGC
CGCGCGTGGCGAATGCACCGACACGATGCCTCAGTCTTTGAGGTCTTTGC
GGACAAGGACGCGTTGATATATTTGAGTCCGGATTCGCCCACTGTGTTGG
AGCGCGTGGATCCCACCAAGGTCTACGTGATCGGCGGACTCGTCGACCGG
GTTGTGCTCAAGAACAAGTCTCTAAGCCGCGCATCCCTCCACGGTGTGGC
CACAGCTCGTTTGCCTTTGAAGGAGTTTTTTGGGCGGCAGGGACGCCGGG
GGGACAAGTACATGTCAGACATGGCGCTTGCCGTCGACCGCGTGGTCGAA
ATTCTCATGAAGCAGTACGAGGTGAACAACTGGGACCAGGCCCTGGCTGC
TGTCTTTCCAGGCGCGGTTCGAAAAGACGACGAGGAGGAGGGGGGGCAGG
GGGTAAGGATTCAGAAGGCTCGGGTGGAGAAAAGTGCCCGCAGTGAAGGA
GATGTGTGACAAGGAGGGTTGACGGACATCGATGCCCGCGGAAGGGAAAA
AAGCACAGGACATACGCA

protein sequence of rna8598

>rna8598-protein ID=rna8598-protein|Name=rna8598|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MPVFHYPADSQTNGTAISYIPVSSQSHPQESGGPSSSPTRQPRGHATDPD
CNDLDHEALPTKMDEDEDEDEEEEEEEGWEDEESKRQKRLEQNRKAAHES
RQRKKIKYQQLSEALEALRAESLQLSQQSQSMREQLAATRPTRHSQERAR
LEEENQRLRQALLLALQGLAEDEEEEPIEEEREGGQGEGHSALREEEESK
EGNTSVTRAPMLE

mRNA from alignment at KK037249.1:371558..372741+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8598 ID=rna8598|Name=rna8598|organism=Nannochloropsis gaditana|type=mRNA|length=1184bp|location=Sequence derived from alignment at KK037249.1:371558..372741+ (Nannochloropsis gaditana)
TTGTTCCTGAGGCATAATACTCTTTGGAATGAATTGCTCATCTCGGTGTC
GTCTATCCCATGCACAGGCTCTACCCtatgaaagaggagacggagcTGGC
CCGCGCGCgacttttcttcttcgcttGAAGGTGAAGGTCCTTCTGGACAT
TCTTCTTTTTGAGATCAAGGACGCCAAGCATCCTTTCATCCACTACGATT
GCACGTATGCCTGTCTTCCACTACCCTGCTGACTCTCAGACGAATGGCAC
GGCCATTTCCTACATTCCTGTGAGCAGCCAGAGCCATCCCCAAGAGTCGG
gaggcccttcctcttcacctaCACGCCAGCCAAGAGGTCATGCCACGGAT
CCAGATTGCAACGATCTCGATCATGAGGCGCTCCCGACCAAAATggatga
agatgaggacgaggacgaggaggaggaagaggaggagggctgggaggatg
aggagtcTAAACGGCAAAAACGCTTGGAGCAAAATCGCAAGGCAGCACAT
GAAAGCCGACAgcggaaaaaaatcaaataCCAACAACTTTCTGAGTAAGT
TTCCAACATGCTACCTTTGACCACCTCCATCCGTCGATGCGCATTCCAGG
GGCCCTCCCATGCCCCAGCAAGGTATGCGTAAAGGAAAGGGCGTGGTCTG
ACCTCACCCCGCCATCTTACAGGGCTCTGGAAGCTCTTCGGGCAGAAAGC
CTCCAGCTGTCGCAGCAATCTCAAAGCATGCGGGAGCAACTCGCCGCGAC
TCGACCCACCAGGCACAGCCAGGAAAGAGCGCgtctcgaggaggagaacc
aGCGCTTGCGTCAGGCGCTTTTGCTGGCCTTGCAAGGACTggccgaggac
gaggaagaggagccgatagaggaagagagggagggtgggcagggggaggg
tcaCAGCGCTCtaagagaagaggaggagagcaaagaGGGGAACACCTCTG
TGACGCGGGCGCCCATGCTGGAATAAGGCTTTGGATGCTTGTGTCGTCTT
CACTGTGCATAGCCGTGGATGTGTTTTTCCGGGGGCCGGGCTCGGCCGAA
CCAGCATCCTAGGAGCGATTCTTTTGGCCTCAAACGCAAATTAAATGTCT
TTACTCATGCAATGAAACAAATAGCATCAATTTGTCCACGAACATGCGTA
CCACTTTGCTTTCTGTTGATACTTTCGCAGGAGC

Coding sequence (CDS) from alignment at KK037249.1:371558..372741+

>rna8598 ID=rna8598|Name=rna8598|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at KK037249.1:371558..372741+ (Nannochloropsis gaditana)
ATGCCTGTCTTCCACTACCCTGCTGACTCTCAGACGAATGGCACGGCCAT
TTCCTACATTCCTGTGAGCAGCCAGAGCCATCCCCAAGAGTCGGgaggcc
cttcctcttcacctaCACGCCAGCCAAGAGGTCATGCCACGGATCCAGAT
TGCAACGATCTCGATCATGAGGCGCTCCCGACCAAAATggatgaagatga
ggacgaggacgaggaggaggaagaggaggagggctgggaggatgaggagt
cTAAACGGCAAAAACGCTTGGAGCAAAATCGCAAGGCAGCACATGAAAGC
CGACAgcggaaaaaaatcaaataCCAACAACTTTCTGAGGCTCTGGAAGC
TCTTCGGGCAGAAAGCCTCCAGCTGTCGCAGCAATCTCAAAGCATGCGGG
AGCAACTCGCCGCGACTCGACCCACCAGGCACAGCCAGGAAAGAGCGCgt
ctcgaggaggagaaccaGCGCTTGCGTCAGGCGCTTTTGCTGGCCTTGCA
AGGACTggccgaggacgaggaagaggagccgatagaggaagagagggagg
gtgggcagggggagggtcaCAGCGCTCtaagagaagaggaggagagcaaa
gaGGGGAACACCTCTGTGACGCGGGCGCCCATGCTGGAATAAATGCCTGT
CTTCCACTACCCTGCTGACTCTCAGACGAATGGCACGGCCATTTCCTACA
TTCCTGTGAGCAGCCAGAGCCATCCCCAAGAGTCGGgaggcccttcctct
tcacctaCACGCCAGCCAAGAGGTCATGCCACGGATCCAGATTGCAACGA
TCTCGATCATGAGGCGCTCCCGACCAAAATggatgaagatgaggacgagg
acgaggaggaggaagaggaggagggctgggaggatgaggagtcTAAACGG
CAAAAACGCTTGGAGCAAAATCGCAAGGCAGCACATGAAAGCCGACAgcg
gaaaaaaatcaaataCCAACAACTTTCTGAGGCTCTGGAAGCTCTTCGGG
CAGAAAGCCTCCAGCTGTCGCAGCAATCTCAAAGCATGCGGGAGCAACTC
GCCGCGACTCGACCCACCAGGCACAGCCAGGAAAGAGCGCgtctcgagga
ggagaaccaGCGCTTGCGTCAGGCGCTTTTGCTGGCCTTGCAAGGACTgg
ccgaggacgaggaagaggagccgatagaggaagagagggagggtgggcag
ggggagggtcaCAGCGCTCtaagagaagaggaggagagcaaagaGGGGAA
CACCTCTGTGACGCGGGCGCCCATGCTGGAATAA

Synonyms

Publications