rna8595, rna8595 (mRNA) Nannochloropsis gaditana

Overview
Namerna8595
Unique Namerna8595
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length516
Alignment locationKK037249.1:362008..362561 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100039g42.4417.mrna
Orig protein idgnl|cribi|Naga_100039g42.4417
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:362008..362561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g42gene8330Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8595rna8595-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22079.1cds8568Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8595 ID=rna8595|Name=rna8595|organism=Nannochloropsis gaditana|type=mRNA|length=516bp
ATGGGCCCGGTGGAATGGAAAGGCATCCGCGGCGCTGACAATCGGTGCTA
CGTCTTGGACTTGGTCCGTCTCACGCCCCGAGACCCGAACTGGATCAAGG
AGGACGAGCAGGATCCTGGCCGGGGGGGCACCGGGGTCTGGGAGCGGGCC
AAGCCCGTGGAAGGGGTGCCACCCTTGGAGGAGGATTTCTCGGCGGTCAT
CCGTCCCGAGTTGCTGGGGCTGTACGTGCGAAGTCAGGTCCTGGCGCTCC
GGCAGAAGGCGGAGGAGACATGTGTGGCAAAACGAAGAAAGGAAGGCAAG
GAGAAGAAGGAGAAGAAGGAGGGGGCAGGGGTGGAGGACGGGCAAGGGGA
AGACAGCGGAAAGGAGGAGGAAGAGGCGACGCTCGACGAGGAGGGCAAGG
CGCGTCTGAAAGAGGAGGAGGAGGAGCTCTTGGAGCGGATGAAGGTGAAT
GCAAACGCCTTCTTGCCCTTGGCGGGGGTGAGGGATCGGGAGCAGAAGTG
CAGACGGGGGCGTTGA
back to top

protein sequence of rna8595

>rna8595-protein ID=rna8595-protein|Name=rna8595|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MGVEAGIDEKAPPAAAQKELPPLGAGAGLTDKAEAQSGMSKGTENVGPGE
EKGTSQAQKEQANVEEESLAEIVLEVELPTGGVLTLPPVQASEVGLGVKQ
VLAEYPEACYYTSYALVVKGSDPRVEINDFTELNEYEGNR
back to top

mRNA from alignment at KK037249.1:362008..362561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8595 ID=rna8595|Name=rna8595|organism=Nannochloropsis gaditana|type=mRNA|length=554bp|location=Sequence derived from alignment at KK037249.1:362008..362561- (Nannochloropsis gaditana)
ATGGGTGTTGAAGCGGGCATAGACGAAAAAGCGCCGCCCGCGGCAGCACA
AAAGGAACTGCCCCCGCTTGGGGCGGGCGCGGGCTTGACGGACAAAGCTG
AAGCACAGTCAGGTATGAGCAAAGGGACAGAAAATGTCGGCCCTGGCGAA
GAAAAGGGGACATCACAAGCACAAAAGGAGCAGGCTAACGTCGAAGAGGA
GTCTCTGGCAGAAATTGTCTTGGAAGTGGAATTGCCCACAGGAGGGGTGT
TGACGCTGCCGCCAGTGCAAGCTAGCGAGGTGGGGCTTGGAGTCAAGCAA
GTGCTGGCGGAGTATCCTGAGGCCTGCTACTACACCAGCTATGCATTGGT
CGTGAAAGGCAGTGACCCGCGCGTGGAGATCAACGACTTCACGGAACTGA
ATGAATATGAAGGTGTGTTCCGGGGGGGCGCCCGCTTAGTGATGGTGCTG
GAGGACTACGACGTGCGGCGGGCCAGGACGCACGTCCGCCGGCTCAAGGA
GCTCCTGCAGTACCCTCCGGTCTTGCTTCCTTCGGCCGTAAAGGTAACAG
GTAA
back to top

Coding sequence (CDS) from alignment at KK037249.1:362008..362561-

>rna8595 ID=rna8595|Name=rna8595|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at KK037249.1:362008..362561- (Nannochloropsis gaditana)
GTAACAGGTAAATGGGTGTTGAAGCGGGCATAGACGAAAAAGCGCCGCCC
GCGGCAGCACAAAAGGAACTGCCCCCGCTTGGGGCGGGCGCGGGCTTGAC
GGACAAAGCTGAAGCACAGTCAGGTATGAGCAAAGGGACAGAAAATGTCG
GCCCTGGCGAAGAAAAGGGGACATCACAAGCACAAAAGGAGCAGGCTAAC
GTCGAAGAGGAGTCTCTGGCAGAAATTGTCTTGGAAGTGGAATTGCCCAC
AGGAGGGGTGTTGACGCTGCCGCCAGTGCAAGCTAGCGAGGTGGGGCTTG
GAGTCAAGCAAGTGCTGGCGGAGTATCCTGAGGCCTGCTACTACACCAGC
TATGCATTGGTCGTGAAAGGCAGTGACCCGCGCGTGGAGATCAACGACTT
CACGGAACTGAATGAATATGAAGGTAACAGGTAAATGGGTGTTGAAGCGG
GCATAGACGAAAAAGCGCCGCCCGCGGCAGCACAAAAGGAACTGCCCCCG
CTTGGGGCGGGCGCGGGCTTGACGGACAAAGCTGAAGCACAGTCAGGTAT
GAGCAAAGGGACAGAAAATGTCGGCCCTGGCGAAGAAAAGGGGACATCAC
AAGCACAAAAGGAGCAGGCTAACGTCGAAGAGGAGTCTCTGGCAGAAATT
GTCTTGGAAGTGGAATTGCCCACAGGAGGGGTGTTGACGCTGCCGCCAGT
GCAAGCTAGCGAGGTGGGGCTTGGAGTCAAGCAAGTGCTGGCGGAGTATC
CTGAGGCCTGCTACTACACCAGCTATGCATTGGTCGTGAAAGGCAGTGAC
CCGCGCGTGGAGATCAACGACTTCACGGAACTGAATGAATATGAAG
back to top
Synonyms
Publications