EWM22079.1, cds8568 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22079.1
Unique Name	cds8568
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:362150..362561 -
Alignment location	KK037249.1:362008..362018 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22079.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g42.4417.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:362150..362561 -
KK037249.1	supercontig	KK037249.1:362008..362018 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR028275	CLU_N

Homology

[Close]

BLAST of EWM22079.1 vs. NCBI_GenBank
Match: gi|585102496|gb|EWM22079.1| (hypothetical protein Naga_100039g42 [Nannochloropsis gaditana])

HSP 1 Score: 274.248 bits (700), Expect = 3.618e-93
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query:    1 MGVEAGIDEKAPPAAAQKELPPLGAGAGLTDKAEAQSGMSKGTENVGPGEEKGTSQAQKEQANVEEESLAEIVLEVELPTGGVLTLPPVQASEVGLGVKQVLAEYPEACYYTSYALVVKGSDPRVEINDFTELNEYEGNR 140
            MGVEAGIDEKAPPAAAQKELPPLGAGAGLTDKAEAQSGMSKGTENVGPGEEKGTSQAQKEQANVEEESLAEIVLEVELPTGGVLTLPPVQASEVGLGVKQVLAEYPEACYYTSYALVVKGSDPRVEINDFTELNEYEGNR
Sbjct:    1 MGVEAGIDEKAPPAAAQKELPPLGAGAGLTDKAEAQSGMSKGTENVGPGEEKGTSQAQKEQANVEEESLAEIVLEVELPTGGVLTLPPVQASEVGLGVKQVLAEYPEACYYTSYALVVKGSDPRVEINDFTELNEYEGNR 140

The following BLAST results are available for this feature:

BLAST of EWM22079.1 vs. NCBI_GenBank

BLAST of EWM22079.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102496\|gb\|EWM22079.1\|	3.618e-93	100.00	hypothetical protein Naga_100039g42 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8595	rna8595	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications