rna8593, rna8593 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8593
Unique Name	rna8593
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1827
Alignment location	KK037249.1:357670..359935 -

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 3
Orig transcript id	gnl\|cribi\|Naga_100752g2.1349.mrna
Orig protein id	gnl\|cribi\|Naga_100752g2.1349
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:357670..359935 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100752g2	gene8328	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22108.1	cds8566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8593	rna8593-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:357670..359935-
coding sequence from alignment at KK037249.1:357670..359935-

mRNA sequence

>rna8593 ID=rna8593|Name=rna8593|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp
GGTGAGGGGGAGGGGGGGGAGAGGAGGGTGCCGGAGGCGGGAGGGGGTTG
GAGAGGCCTGATCAAGCCGGATATCATCTTCTTCGGGGAGTCCCTGGGCG
ACAAGTTCAGCACGGCCATGGAGTACGACAAACAGCGCGTGGACCTGTTG
CTCGTCCTGGGTTCTTCTCTTAAGGTGGGGCCCGTGAACAAGATCCTGCA
GTGGCTGCCTGCCCGGGTCCCGCAGGTGCTGATTAATCGGGAGGTGGTGG
GTGCCCCCAACAGATTCGACGTGGAGCTACTGGGGGACTGTGACGCGGTG
GTGAGGGAGCTGTGGGCGAGGCTGGGATGGGAGGGTCTGGAGGAGGAGGG
GGAGGAAGGAGGGGGGGGAGGGGGGGAGGGGTGGGAGTTTGCAGGCCAGA
ATCGGTACTACTTCGTGAACGCCAAACGGCCGGTGGAGGAGACGAGCGGA
GAGGAGAGGGGCGAGGAGGAAGGGGAAGGAGGGATTGTTGAGGAGGAGGT
CGAGAGGGAGGAGGAGGAAGTTTCCTGTCCTTTGCCTGTAGTGGCGCATC
ACGAAGGAGAGACGGAGACGGAGGCGGCGGCCGTGGAGGCGGAGGAGGTG
GCGGCCCGACGCCGGAAGGAGGAGGACTGGGAAGTAGGCCCGGGGGTGTT
GAGGCGGGCGGAAGGCAGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGG
GAGGGGGGGCGCCGGGGTCGGGTACAGCGATGCCCCCCGAGGGCCTTTCC
GAGTCCGAGCCCCTGACAGTAGACCCTGTCGCTCCTCATCATCAGCAGCT
CCTGCCTCTATTCCCCGCCCTGGCCGTCCCACAGTCCCCGCACCACGGTC
AAGACCTCTCCTCCTTCCTCCCTCCCGCCCTTCTCTCCCCGCTGAACTCG
CCCCTCCTCCCTTCTGTGGAAGGGCGGAGGAGAGGGGAGGAGGAGGAAGG
GAAAAAGTGTAGAGGAGGGCCGGGGACGGAATGGGGGAGCAAAAGTGGCA
CCCCACGGTCGAAGGATTCCCCGGGAGGCCTCCGAGGCCTGCCCTCCCCC
TCTTGCCAGCCCTCCCCCTTCACCCTCCAGCCCATGTCTCCTCGGTCCAA
CACACTGGTGAGCACGCCCCGGGGGGGTACAATGACGCTGATGGGACGGG
AAGGAGGGGCGGAGGAGGAGGCTTCCGGTAGGGAAGGGGGCGGGCGGTTG
GCGGAACTGGAACGGGAGGCGTTCTACCTCCCCTGAGGCCTTTGAAGGGG
AGGTACCAGAGTCGATGAGGAGGGAGGAGGTACGTGCACGCGACGGAAAA
AGAGGGAAAAGTTTGGAGGAAAGGTGAGGCCTCAGGGGCAGGAGAGGGAG
GATGGGAGGGACTCGACAGTGAGGCGAGGGAGGAGAAGGCACAGGTGGTG
GTGAGAGAGAAGCATGGAGACGGAAGGAAGGTGATGGCCGTGGAAGGAGG
AGGGAAGAGTCCGGCGAAAAAAGGGGGAAAGATGGTTTTCGGAGGTGCGG
GGAGGGGAGAGAGGGGGGTGGGGAAGGAGGTCAGTGACACATCCGGGTGT
GACACAAGAAGGTGGGGAGGGGAGCTGACGCGGGGAGGGACACTGAAGGT
CGCGCGCGCAGTCCGATTAAAGTAAACGATTTTGAAGTCACTCGTCTCGG
TCGCGGCGATTGCCCACCGGCAGCGGCGACGCGTAAGGTAGGAGTCAGCT
TAAGCGGAATAGAAATGATGCACGGCGCGGGGCTGGGAGAAGCATGTCGA
CGTGAGCAAATGCCGGTCGCGTCGACGAAGGTTAGCCAAGGAAAGCGCAA
CAAAGCCAGAGATGGGGCACGTGCTGA

protein sequence of rna8593

>rna8593-protein ID=rna8593-protein|Name=rna8593|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MSDSSRTETPQNLRWGRGRGRGKRRRARHPQLGKGRRRRGKKWGTPRPRG
RTQTLWAPPRASPLQSLPPRLETTMTTRTGTWGWPAVGLGRKKKGKKGKS
GGRRPGLNGFANTSPSTGVDDAAVTTAVFFSTPVEMSPPPLASPGLSLQE
IRARVVDDVRRRYRYASPSLLGRAGAPVANPHALLRRLCQKLGLRVYARA
YDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGN
VGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHL
EKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIY
LLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDR
VVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSR
WLTELTQKAVERASSKQAQGLKFNPWKGEGPRGLGGRPGKKPAPAPVAVD
TPAVEQDDSWLEAMEAEERARSAAAGGKKKKKNSGGDGGKKK

mRNA from alignment at KK037249.1:357670..359935-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8593 ID=rna8593|Name=rna8593|organism=Nannochloropsis gaditana|type=mRNA|length=2266bp|location=Sequence derived from alignment at KK037249.1:357670..359935- (Nannochloropsis gaditana)
CCTGGGTCGCCTTTGCCAGCTTGCCCGGGAGGCAGGGGGGGAGGGGGGGG
GGGAGGGAGGGGGGGAGGGAGGGACGAAGGCGGGCCATGCCTCGAAACGC
TACCGGTGCCCCGAGTACTTCATCCAACTCTGCGAGACGGAGATGGTGGC
GCGGGCGGTCAAGCACCTCGTCTTCGATCTGCTCAAGGACCGACCGGATC
TGCGCGCCTCCCCGGGCCCCACCTTGGTGGCCTGTCTGAACGCCGTCCTT
GGCCAGGGGGAGCCCGATGAGCGACTCGTCCCGGACCGAGACGCCACAAA
ACCTCCGTTGGGGCAGGGGGCGGGGGCGGGGGAAAAGAAGGAGAGCGAGG
CACCCACAGCTGGGAAAGGGAAGAAGAAGAAGGGGAAAAAAATGGGGGAC
GCCTCGCCCCCGGGGCCGGACGCAGACCCTGTGGGCGCCTCCACGAGCCT
CGCCGCTCCAATCGCTGCCACCGCGCCTGGAGACGACAATGACAACGAGA
ACGGGCACGTGGGGATGGCCGGCAGTGGGCCTGGGAAGAAAAAAAAAGGG
GAAGAAAGGGAAAAGCGGGGGTCGGCGCCCAGGCCTGAATGGGTTTGCGA
ACACTTCTCCTTCCACCGGTGTCGATGACGCGGCCGTAACCACTGCCGTG
TTCTTCAGCACCCCCGTGGAGATGAGCCCGCCTCCCCTGGCCAGCCCGGG
CCTCTCTTTGCAAGAAATTCGGGCCCGCGTCGTCGACGACGTGCGCCGGC
GGTACCGGTACGCTTCTCCGAGTCTACTGGGCCGGGCGGGCGCCCCGGTG
GCCAATCCTCACGCCCTGCTCCGACGCCTGTGCCAAAAGCTGGGCCTCCG
GGTCTACGCGCGTGCATACGATTTTACCGGGGCGGTCTCGGAGCCCCTGT
CCTTGGCCGATCTGGCTGAAATCCACCCCGTCGCGAAGCATTGCGCCCCT
GCCTGCTTGCTGGAAGAAGCGCAGGAGCTGCTGGCCACGGCCAAGGTCCT
GGCTCAGACGGGGAACGTGGGGCCGGCCTTCGAGTACGTGAGCGAGGCGA
CGAGCATGCTGCAGCAGACGCTTGGCTCGGTCCACCTGGAAGTAGCGCAT
TGCCTGGAGCTTTCGGGCTCCCTCCTCTGTCAAGCCGGCGACCCGGAGGC
GGGGCTGGCCCATTTGGAGAAGGCCATGGCCATCTATTGGCAGACCGCCG
GCTTCGATTCCTTCGAAGTCACCAACGCCCACCACCTCCTCGGGGTCTTC
CTCCAACAGTCCCGCCAAGGCGCCCGGTACGACCAGGCCATCTTCCATTT
CCACGCCTGCATCTACCTCCTCGAGCTGGTCGCGGGGCCGTATTCCCCTG
AGCTACCCACCCAGTACCTGAAGCTGGCGGCGGCCTACCAGGAGCTGGGC
CGGCCCAAGGAATCCTACCAGTGCCTCTCCCTGGCCCTCGAAAAAGCCGA
GCACGTGCCGGATCGGGTGGTGGAGGCCCATGTCGCCCACCAACTCGCCA
TGCTCGAAGCCTCTTACACCCTGTACAAGGAAGCGCTCGCGCACGAGAAG
CGTTCCTACCTTCTGTATCGGGAGGCGTTGGGCGAGGAGCACCCCCGGGT
GGGGGAGTCCTCGCGATGGCTCACGGAATTGACGCAAAAGGCTGTGGAGC
GGGCGAGCAGCAAGCAAGCACAAGGCCTCAAGTTCAACCCCTGGAAAGGC
GAGGGTCCTCGCGGTCTTGGAGGGAGGCCTGGAAAGAAGCCAGCGCCGGC
CCCCGTGGCGGTGGACACCCCCGCGGTAGAGCAGGACGACTCATGGCTGG
AGGCCATGGAAGCGGAGGAGCGGGCGCGCTCAGCCGCTGCCGGGGGGAAA
AAGAAGAAGAAGAACAGCGGGGGTGATGGTGGGAAGAAGAAGTGAGAGGG
ATCTGCGTTGGAGGCGGGGAAGGCAGTGTCCGAGGCGGCAGGGTTTTGCG
CTGACCGGGAGAGGGATCGTGCGGTCGTTCGTTGCGATAAGGTTGGCTTG
TGAGCTGCATAAGGCGTGTGTTGGCGTAGTACATGCACGTAGGAAAAGAC
TAGAAAGGGTAGATTAGGTCCTGCTTGTGGACATAGAATTAGCGAGAAAC
GGCCCATGGCGAAGCGCTGAGCACACCTTTTCAGGTGTCCGAACGAAGCG
CACCAAACCAGCAGCGTGACGGGGAAAGTAGATGCAGGAAGAGACGTTGC
AGTTTTTGACAGGAGGTATCTTTGTTTTCGGATACGAGTAAATTACAGGG
ATGAGGTTGTATACTC

Coding sequence (CDS) from alignment at KK037249.1:357670..359935-

>rna8593 ID=rna8593|Name=rna8593|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at KK037249.1:357670..359935- (Nannochloropsis gaditana)
ATGAGCGACTCGTCCCGGACCGAGACGCCACAAAACCTCCGTTGGGGCAG
GGGGCGGGGGCGGGGGAAAAGAAGGAGAGCGAGGCACCCACAGCTGGGAA
AGGGAAGAAGAAGAAGGGGAAAAAAATGGGGGACGCCTCGCCCCCGGGGC
CGGACGCAGACCCTGTGGGCGCCTCCACGAGCCTCGCCGCTCCAATCGCT
GCCACCGCGCCTGGAGACGACAATGACAACGAGAACGGGCACGTGGGGAT
GGCCGGCAGTGGGCCTGGGAAGAAAAAAAAAGGGGAAGAAAGGGAAAAGC
GGGGGTCGGCGCCCAGGCCTGAATGGGTTTGCGAACACTTCTCCTTCCAC
CGGTGTCGATGACGCGGCCGTAACCACTGCCGTGTTCTTCAGCACCCCCG
TGGAGATGAGCCCGCCTCCCCTGGCCAGCCCGGGCCTCTCTTTGCAAGAA
ATTCGGGCCCGCGTCGTCGACGACGTGCGCCGGCGGTACCGGTACGCTTC
TCCGAGTCTACTGGGCCGGGCGGGCGCCCCGGTGGCCAATCCTCACGCCC
TGCTCCGACGCCTGTGCCAAAAGCTGGGCCTCCGGGTCTACGCGCGTGCA
TACGATTTTACCGGGGCGGTCTCGGAGCCCCTGTCCTTGGCCGATCTGGC
TGAAATCCACCCCGTCGCGAAGCATTGCGCCCCTGCCTGCTTGCTGGAAG
AAGCGCAGGAGCTGCTGGCCACGGCCAAGGTCCTGGCTCAGACGGGGAAC
GTGGGGCCGGCCTTCGAGTACGTGAGCGAGGCGACGAGCATGCTGCAGCA
GACGCTTGGCTCGGTCCACCTGGAAGTAGCGCATTGCCTGGAGCTTTCGG
GCTCCCTCCTCTGTCAAGCCGGCGACCCGGAGGCGGGGCTGGCCCATTTG
GAGAAGGCCATGGCCATCTATTGGCAGACCGCCGGCTTCGATTCCTTCGA
AGTCACCAACGCCCACCACCTCCTCGGGGTCTTCCTCCAACAGTCCCGCC
AAGGCGCCCGGTACGACCAGGCCATCTTCCATTTCCACGCCTGCATCTAC
CTCCTCGAGCTGGTCGCGGGGCCGTATTCCCCTGAGCTACCCACCCAGTA
CCTGAAGCTGGCGGCGGCCTACCAGGAGCTGGGCCGGCCCAAGGAATCCT
ACCAGTGCCTCTCCCTGGCCCTCGAAAAAGCCGAGCACGTGCCGGATCGG
GTGGTGGAGGCCCATGTCGCCCACCAACTCGCCATGCTCGAAGCCTCTTA
CACCCTGTACAAGGAAGCGCTCGCGCACGAGAAGCGTTCCTACCTTCTGT
ATCGGGAGGCGTTGGGCGAGGAGCACCCCCGGGTGGGGGAGTCCTCGCGA
TGGCTCACGGAATTGACGCAAAAGGCTGTGGAGCGGGCGAGCAGCAAGCA
AGCACAAGGCCTCAAGTTCAACCCCTGGAAAGGCGAGGGTCCTCGCGGTC
TTGGAGGGAGGCCTGGAAAGAAGCCAGCGCCGGCCCCCGTGGCGGTGGAC
ACCCCCGCGGTAGAGCAGGACGACTCATGGCTGGAGGCCATGGAAGCGGA
GGAGCGGGCGCGCTCAGCCGCTGCCGGGGGGAAAAAGAAGAAGAAGAACA
GCGGGGGTGATGGTGGGAAGAAGAAGTGA

Synonyms

Publications