EWM22108.1, cds8566 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|585102527|gb|EWM22108.1| (eukaryotic translation initiation factor 3 [Nannochloropsis gaditana]) HSP 1 Score: 1100.89 bits (2846), Expect = 0.000e+0 Identity = 542/542 (100.00%), Postives = 542/542 (100.00%), Query Frame = 0
Query: 1 MSDSSRTETPQNLRWGRGRGRGKRRRARHPQLGKGRRRRGKKWGTPRPRGRTQTLWAPPRASPLQSLPPRLETTMTTRTGTWGWPAVGLGRKKKGKKGKSGGRRPGLNGFANTSPSTGVDDAAVTTAVFFSTPVEMSPPPLASPGLSLQEIRARVVDDVRRRYRYASPSLLGRAGAPVANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQAQGLKFNPWKGEGPRGLGGRPGKKPAPAPVAVDTPAVEQDDSWLEAMEAEERARSAAAGGKKKKKNSGGDGGKKK 542
MSDSSRTETPQNLRWGRGRGRGKRRRARHPQLGKGRRRRGKKWGTPRPRGRTQTLWAPPRASPLQSLPPRLETTMTTRTGTWGWPAVGLGRKKKGKKGKSGGRRPGLNGFANTSPSTGVDDAAVTTAVFFSTPVEMSPPPLASPGLSLQEIRARVVDDVRRRYRYASPSLLGRAGAPVANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQAQGLKFNPWKGEGPRGLGGRPGKKPAPAPVAVDTPAVEQDDSWLEAMEAEERARSAAAGGKKKKKNSGGDGGKKK
Sbjct: 1 MSDSSRTETPQNLRWGRGRGRGKRRRARHPQLGKGRRRRGKKWGTPRPRGRTQTLWAPPRASPLQSLPPRLETTMTTRTGTWGWPAVGLGRKKKGKKGKSGGRRPGLNGFANTSPSTGVDDAAVTTAVFFSTPVEMSPPPLASPGLSLQEIRARVVDDVRRRYRYASPSLLGRAGAPVANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQAQGLKFNPWKGEGPRGLGGRPGKKPAPAPVAVDTPAVEQDDSWLEAMEAEERARSAAAGGKKKKKNSGGDGGKKK 542
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|695403473|ref|XP_009523291.1| (hypothetical protein PHYSODRAFT_359947 [Phytophthora sojae] >gi|348680758|gb|EGZ20574.1| hypothetical protein PHYSODRAFT_359947 [Phytophthora sojae]) HSP 1 Score: 193.741 bits (491), Expect = 3.042e-49 Identity = 117/337 (34.72%), Postives = 189/337 (56.08%), Query Frame = 0
Query: 141 LASPGLSLQEIRARVVDDVRRRYRYASPSLLG--------RAGAPVANPH--ALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
+ + L+ + +RAR+ +++ R+ Y SL G AP+ H LLRRLCQ+LGLRV +R YDF+ + + P++L D+ + PV K PA L +A++LL +V G + ++E++ EA+S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ + A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+ Q+A+ Y+EALA+EK+ Y LY+EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 928 ITTASLNAKSLRARIDKEIKARFDY-ELSLWGPGREVEQSENSAPLGRVHKPVLLRRLCQRLGLRVASRNYDFSSSCAAPITLDDITGVVPVVKSSLPAHPLAQAKQLLERGRVHLSQGALSSSYEFLQEASSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGTDYHDTAFAHANLALFLHAN---AQTELAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANTLRQMALACGLAGGYREALAYEKKVYSLYKEAYGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1258
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|568059689|gb|ETM56260.1| (hypothetical protein L914_00717 [Phytophthora parasitica]) HSP 1 Score: 188.734 bits (478), Expect = 1.625e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITSVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|566033880|gb|ETI56791.1| (hypothetical protein F443_00792 [Phytophthora parasitica P1569]) HSP 1 Score: 188.734 bits (478), Expect = 1.768e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITSVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|570337572|gb|ETO85520.1| (hypothetical protein F444_00793 [Phytophthora parasitica P1976]) HSP 1 Score: 187.578 bits (475), Expect = 3.533e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|570998335|gb|ETP54574.1| (hypothetical protein F442_00741 [Phytophthora parasitica P10297]) HSP 1 Score: 187.578 bits (475), Expect = 3.808e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|568029078|gb|ETM03010.1| (hypothetical protein L917_00689 [Phytophthora parasitica]) HSP 1 Score: 187.578 bits (475), Expect = 3.953e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|567971570|gb|ETK96576.1| (hypothetical protein L915_00731 [Phytophthora parasitica]) HSP 1 Score: 187.578 bits (475), Expect = 4.103e-47 Identity = 106/289 (36.68%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD +A ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAIAQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|570961594|gb|ETP26573.1| (hypothetical protein F441_00775 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 186.037 bits (471), Expect = 1.284e-46 Identity = 105/289 (36.33%), Postives = 166/289 (57.44%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD + ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAITQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255
BLAST of EWM22108.1 vs. NCBI_GenBank
Match: gi|970641474|gb|KUF83552.1| (Clustered mitochondria protein [Phytophthora nicotianae]) HSP 1 Score: 186.037 bits (471), Expect = 1.296e-46 Identity = 105/289 (36.33%), Postives = 166/289 (57.44%), Query Frame = 0
Query: 179 ANPHALLRRLCQKLGLRVYARAYDFTGAVSEPLSLADLAEIHPVAKHCAPACLLEEAQELLATAKVLAQTGNVGPAFEYVSEATSMLQQTLGSVHLEVAHCLELSGSLLCQAGDPEAGLAHLEKAMAIYWQTAGFDSFEVTNAHHLLGVFLQQSRQGARYDQAIFHFHACIYLLELVAGPYSPELPTQYLKLAAAYQELGRPKESYQCLSLALEKAEHVPDRVVEAHVAHQLAMLEASYTLYKEALAHEKRSYLLYREALGEEHPRVGESSRWLTELTQKAVERASSKQ 467
N +LRRLCQ+LGLRV +R Y+F+ S P+SL D+ + PV K PA L +A++LL ++ G + A+E++ E++S+L Q G+ H + A C ++L AGD + ++A+A+Y Q G D + AH L +FL + A+ D A+ H IYLLE GP+ PE+ + Y K+ Q++G+ + C +L + E DR A+V HQ+A+ + Y+EAL +EK+ Y L +EA G+E PRV ES++++ + T+KAVE A ++
Sbjct: 974 VNKSVMLRRLCQRLGLRVVSRNYEFSS--SSPISLDDITGVVPVVKTSLPAHPLAQAKQLLERGRMHLSQGALSNAYEFLQESSSLLFQVCGAAHEDAALCSSSLATVLYHAGDVAGAITQQQRALALYTQLQGIDYHDTAYAHANLALFLHAN---AQTDLAVPHIRRAIYLLEFCCGPHFPEISSLYFKMGMMCQDVGQITLALMCHRESLRRGEF--DRNQAANVLHQMALACSLAGGYREALMYEKKVYSLMKEAFGDEDPRVIESAKFMAKFTEKAVEGAKGRR 1255 The following BLAST results are available for this feature:
BLAST of EWM22108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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