rna859, rna859 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna859
Unique Name	rna859
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1572
Alignment location	CM002456.1:587363..589373 +

Link to JBrowse

Properties


Property Name	Value
Product	elongation of very long chain fatty acids protein 6
Orig transcript id	gnl\|cribi\|Naga_100017g49.331.mrna
Orig protein id	gnl\|cribi\|Naga_100017g49.331
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:587363..589373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g49	gene822	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna859	rna859-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29833.1	cds859	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:587363..589373+
coding sequence from alignment at CM002456.1:587363..589373+

mRNA sequence

>rna859 ID=rna859|Name=rna859|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp
GAGGGTCTTCCAGGAATTGTGTTCCCTGTCTTGAATATAATCTATGCCCC
AGGGCTACCTGCGACAGGATACGATTCTTGGCGCGCAGACTGCCAGAGTA
GCAGTGCTCACTCCTTTCGGAGAACAAGCACTATTAATTTCCACGCTCAT
TCGAATGTTATGACTGCGTTACAAACATTATTTTTTATTATTCACTTCAT
TGACACCAAAGGTTGTCCTCGCCTTCATGTGTCCTTCAAGCGAGCGGAAA
GGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCCGTACCTC
TAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCGTGTTGCA
GCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACAACTATCC
AGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCATGGATGA
CGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAATCTACCAG
CAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGCACAAGCA
CTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAGATATTCC
CCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTCACGCCTT
CGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGCCATTCCG
AAGATACGCATTCAGGACGGAGATCTTTTAAGCAATGACCGCGTTTTGGT
GCATGGACGTCCCATTCGCAAGACGGACGTGGCAGTCTTCGGGGGCTTTA
TGGGGGTTGCGATCGCGCAAGCAGAGATGGCACGGCGGAGGGAGAGGTTA
GGTCAAGGGGGGGTAGAGGGGGACGTATATTTGGTCACATACCAAATAGC
CTTGTACGATCGGGACCAACGCGGCCTTATGCAGGCGTTGCAGCGGCTGG
CCGAGCGTGCGGAGACGACGACGAGCGCAGGGCTGGCGTCCTTGGCCTCT
AGCGTATCTCTGGAGCTCCTCCGATCCTACGAAGGCTGGGTAGCGGCGCA
GGCCACGAGCGGGAGGTTCAAAGATATGGCGGCCGCAGAGCGAGCCTTCA
ATGAGGCTTCCATGAGGGAGCGGAAGAAATGGGCCTTCGAGAACACGCCT
GAGGACAGGGCTGCGATGGTCTTGGCGGCGAGGCGGAAGGGCAACGAGAG
CAAGGAGAGTTCGGCAGCTTCTTCTATGGCAGGAAAACAATTACTTGTCT
TGACGTTGATGGTGGCATGCCGAAATATAGGTGGAAAGCATATTCTACCG
CGTAGGTCGGGATCAGCCGAGGCTCTGGAAGGGTCGTTGGAGCGCTTCGC
GGCGGCTCTTCTGGAAAAGAATGGGAAGAACGTACTTGCGGTGGACGTAA
GTTGGACTCCTGATGGTGATGGGGAGATATTAAGTCGCTTGGATGTCACG
CGGAAATGGCCAGAGCTGATAGATTTGTAGATTTTCCTTATGTAGAGGGC
CCTAACAAGACTCGCAATCAGTCACTGAATTTAGGCAATGAAACAACATG
GACGCATTAACAAAGGCAGTAC

protein sequence of rna859

>rna859-protein ID=rna859-protein|Name=rna859|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MSWFLDPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDV
SAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPA
LWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGL
WVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNP
GLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGV
TAAAYSYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRT
PVSKLASKDIGAAPSNEGRDKKKT

mRNA from alignment at CM002456.1:587363..589373+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna859 ID=rna859|Name=rna859|organism=Nannochloropsis gaditana|type=mRNA|length=2011bp|location=Sequence derived from alignment at CM002456.1:587363..589373+ (Nannochloropsis gaditana)
TTGTAAATGATGGGGAATGTGGTATGGATGGGGCGGGTGCGATCCTTATG
TGAGATTGATTCGCGTGGTTGATGCGGGACAGTTGAGACTAACCAGCACA
TACGGTGTTCTTGAGGTTGAAGAAGTGCAAGTATTCGCGTCGGTTCCTGA
GCCAAATTCTACTCTTCACTGTATCGCATGCTTGTTACACCCGCAGTAAA
AGCTATGTGTATGAATGAAGACGATGCCGCTTTTTTCCCGCAGAGGCGTA
CCGTTGATTCCATCATTACGACTGACAATTTACCTTCTATGCACCTCGCG
CACAGGGTTGCAATATTAAAACTTGGGAAGATCGATCCTGTTTACGTATA
ACAAGGCACCAGAGGGCAGTTGTTTGACATATAATGTCTTGGTTTCTGGA
TCCTGCACCACTGTACGAGACCAGCCAGTATATTACGCGCGACCCTGTCA
AGCCCGTGCGATTTGTGCAGGTCTTTCAGGccatccccgccctcgaGCCT
TTCTACACCGAGTGGGAGAAGCATTTCGATGTTTCTGCGCCGTTCCGCGC
CATTCGTGATAGCAAGTGGGTACCCATCATGGCTGTCATTCTTTATTTGT
CCTTCCTCGTTGAGGGAAAGAAGTACATCGAGCggcgaaagaaggaaggc
aaggggCCTGTGAATCTGGGATATTTCCCCGCCCTTTGGAACGGTTTTCT
GGCTCTCTTCTCGATAGCAGGAGCGTTGCGCGTGGTACCGCATTTCTTGT
TCCTATTTACGCACAAGGACTTCAAGGAGACTGTTTGCGAAGCCCCTGAT
GCGGCAGGGTACGGGGACGGGGCGGCAGGGCTGTGGGTCATGCTATTCAC
CGTCTCTAAGGTCTTTGAGCTCATGGACACTGTCATTCTGGTACTAAAGG
GCAAGGACCCAATGTTTCTACACTGGTAAGTCGAGAtggagctggagggg
cggagaaggaagataATTTCTGATTTGACAATGATTTGCTTCGCAGTAGA
AATGTACTAAATGTGCTCTCCGTCAACAGGTACCACCACGTGACGGTGCT
CCTGTATACCTGGTTTTCATACTCGGCACGCAACCCTGGCTTGTACTTCA
TTGCCATGAATTACACCGTGCACGCAGTCATGTACTCTTACTATTTCCTG
ATGGAGCTCCGTCTGTGGCCCAAGTGGCTCAGGTAGGGATGCTTGAACGC
CctgacttcctcccttttcgtGTACTTCACCAGCTTGCCCTGTGGCGTTG
CTTGGCTAGACGTCTGTGTTCATGTTCTCACAAAAGGTGCGATCTCTCTG
TGCCACAGTCCTGTTTTTATCACTCTGATGCAGATCTCGCAGATGCTCGT
TGGCGTCGGTGTCACAGCAGCCGCTTATTCGTACCAGGCTGACCCCTCGT
GTGCCGTCGTCCGGGACTTGATTCCGTGGTGCGCCGCCATGTACGCCACC
TACCTCTACTTTTTTGTCGAGTTTTTCGTGGAGCGATTCCTTGCTGCGTC
CACCAAGAGGACTCCTGTGTCGAAGCTTGCTTCTAAGGATATCGGTGCCG
CGCCCTCAAATGAAGGGCGCGATAAGAAGAAGACGTGAAAGTATCCTGAA
AAGAATAACACGGAGATGAAGGCGGAAGAAAAGATTAGGAATAAACAGTG
GAGGGCAAGGTCAACATGttgacaaggaaggaaataaaTTAAAATTGATC
ACTTGAACTGGTCCATTCCTGCTAAACGCCATTTGCCTACAAGAAGGCCG
TGAGTTACTCGAGAGAGCGCTTTTTGATGTATATGAGGAAAGTGGGGGCA
ATAAGAAGGAACAGTGTTTTGAAGGTGAAAGAGGACTTGAAGGGGGTTCC
TACAACATCGCAAGCGAGCAAGCGTTAACTGAGTGTATCAGGAGAAAGGA
ACGTGTGGGAAGGGACAGCGTAATGTTTGTCtcagaaggagagaaaaagt
GTGCCATGCCAGCCACGCACACGCCGAAAAAGTATTAAATACAGATATCA
CTAAGAGTGCA

Coding sequence (CDS) from alignment at CM002456.1:587363..589373+

>rna859 ID=rna859|Name=rna859|organism=Nannochloropsis gaditana|type=CDS|length=2925bp|location=Sequence derived from alignment at CM002456.1:587363..589373+ (Nannochloropsis gaditana)
ATGTCTTGGTTTCTGGATCCTGCACCACTGTACGAGACCAGCCAGTATAT
TACGCGCGACCCTGTCAAGCCCGTGCGATTTGTGCAGGTCTTTCAGGcca
tccccgccctcgaGCCTTTCTACACCGAGTGGGAGAAGCATTTCGATGTT
TCTGCGCCGTTCCGCGCCATTCGTGATAGCAAGTGGGTACCCATCATGGC
TGTCATTCTTTATTTGTCCTTCCTCGTTGAGGGAAAGAAGTACATCGAGC
ggcgaaagaaggaaggcaaggggCCTGTGAATCTGGGATATTTCCCCGCC
CTTTGGAACGGTTTTCTGGCTCTCTTCTCGATAGCAGGAGCGTTGCGCGT
GGTACCGCATTTCTTGTTCCTATTTACGCACAAGGACTTCAAGGAGACTG
TTTGCGAAGCCCCTGATGCGGCAGGGTACGGGGACGGGGCGGCAGGGCTG
TGGGTCATGCTATTCACCGTCTCTAAGGTCTTTGAGCTCATGGACACTGT
CATTCTGGTACTAAAGGGCAAGGACCCAATGTTTCTACACTGGTACCACC
ACGTGACGGTGCTCCTGTATACCTGGTTTTCATACTCGGCACGCAACCCT
GGCTTGTACTTCATTGCCATGAATTACACCGTGCACGCAGTCATGTACTC
TTACTATTTCCTGATGGAGCTCCGTCTGTGGCCCAAGTGGCTCAGTCCTG
TTTTTATCACTCTGATGCAGATCTCGCAGATGCTCGTTGGCGTCGGTGTC
ACAGCAGCCGCTTATTCGTACCAGGCTGACCCCTCGTGTGCCGTCGTCCG
GGACTTGATTCCGTGGTGCGCCGCCATGTACGCCACCTACCTCTACTTTT
TTGTCGAGTTTTTCGTGGAGCGATTCCTTGCTGCGTCCACCAAGAGGACT
CCTGTGTCGAAGCTTGCTTCTAAGGATATCGGTGCCGCGCCCTCAAATGA
AGGGCGCGATAAGAAGAAGACGTGAATGTCTTGGTTTCTGGATCCTGCAC
CACTGTACGAGACCAGCCAGTATATTACGCGCGACCCTGTCAAGCCCGTG
CGATTTGTGCAGGTCTTTCAGGccatccccgccctcgaGCCTTTCTACAC
CGAGTGGGAGAAGCATTTCGATGTTTCTGCGCCGTTCCGCGCCATTCGTG
ATAGCAAGTGGGTACCCATCATGGCTGTCATTCTTTATTTGTCCTTCCTC
GTTGAGGGAAAGAAGTACATCGAGCggcgaaagaaggaaggcaaggggCC
TGTGAATCTGGGATATTTCCCCGCCCTTTGGAACGGTTTTCTGGCTCTCT
TCTCGATAGCAGGAGCGTTGCGCGTGGTACCGCATTTCTTGTTCCTATTT
ACGCACAAGGACTTCAAGGAGACTGTTTGCGAAGCCCCTGATGCGGCAGG
GTACGGGGACGGGGCGGCAGGGCTGTGGGTCATGCTATTCACCGTCTCTA
AGGTCTTTGAGCTCATGGACACTGTCATTCTGGTACTAAAGGGCAAGGAC
CCAATGTTTCTACACTGGTACCACCACGTGACGGTGCTCCTGTATACCTG
GTTTTCATACTCGGCACGCAACCCTGGCTTGTACTTCATTGCCATGAATT
ACACCGTGCACGCAGTCATGTACTCTTACTATTTCCTGATGGAGCTCCGT
CTGTGGCCCAAGTGGCTCAGTCCTGTTTTTATCACTCTGATGCAGATCTC
GCAGATGCTCGTTGGCGTCGGTGTCACAGCAGCCGCTTATTCGTACCAGG
CTGACCCCTCGTGTGCCGTCGTCCGGGACTTGATTCCGTGGTGCGCCGCC
ATGTACGCCACCTACCTCTACTTTTTTGTCGAGTTTTTCGTGGAGCGATT
CCTTGCTGCGTCCACCAAGAGGACTCCTGTGTCGAAGCTTGCTTCTAAGG
ATATCGGTGCCGCGCCCTCAAATGAAGGGCGCGATAAGAAGAAGACGTGA
ATGTCTTGGTTTCTGGATCCTGCACCACTGTACGAGACCAGCCAGTATAT
TACGCGCGACCCTGTCAAGCCCGTGCGATTTGTGCAGGTCTTTCAGGcca
tccccgccctcgaGCCTTTCTACACCGAGTGGGAGAAGCATTTCGATGTT
TCTGCGCCGTTCCGCGCCATTCGTGATAGCAAGTGGGTACCCATCATGGC
TGTCATTCTTTATTTGTCCTTCCTCGTTGAGGGAAAGAAGTACATCGAGC
ggcgaaagaaggaaggcaaggggCCTGTGAATCTGGGATATTTCCCCGCC
CTTTGGAACGGTTTTCTGGCTCTCTTCTCGATAGCAGGAGCGTTGCGCGT
GGTACCGCATTTCTTGTTCCTATTTACGCACAAGGACTTCAAGGAGACTG
TTTGCGAAGCCCCTGATGCGGCAGGGTACGGGGACGGGGCGGCAGGGCTG
TGGGTCATGCTATTCACCGTCTCTAAGGTCTTTGAGCTCATGGACACTGT
CATTCTGGTACTAAAGGGCAAGGACCCAATGTTTCTACACTGGTACCACC
ACGTGACGGTGCTCCTGTATACCTGGTTTTCATACTCGGCACGCAACCCT
GGCTTGTACTTCATTGCCATGAATTACACCGTGCACGCAGTCATGTACTC
TTACTATTTCCTGATGGAGCTCCGTCTGTGGCCCAAGTGGCTCAGTCCTG
TTTTTATCACTCTGATGCAGATCTCGCAGATGCTCGTTGGCGTCGGTGTC
ACAGCAGCCGCTTATTCGTACCAGGCTGACCCCTCGTGTGCCGTCGTCCG
GGACTTGATTCCGTGGTGCGCCGCCATGTACGCCACCTACCTCTACTTTT
TTGTCGAGTTTTTCGTGGAGCGATTCCTTGCTGCGTCCACCAAGAGGACT
CCTGTGTCGAAGCTTGCTTCTAAGGATATCGGTGCCGCGCCCTCAAATGA
AGGGCGCGATAAGAAGAAGACGTGA

Synonyms

Publications