EWM29833.1, cds859 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585112414|gb|EWM29833.1| (elongation of very long chain fatty acids protein 6 [Nannochloropsis gaditana]) HSP 1 Score: 666.766 bits (1719), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0 Query: 1 MSWFLDPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGAAPSNEGRDKKKT 324 MSWFLDPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGAAPSNEGRDKKKT Sbjct: 1 MSWFLDPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGAAPSNEGRDKKKT 324
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585102147|gb|EWM21810.1| (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 486.878 bits (1252), Expect = 9.044e-171 Identity = 227/296 (76.69%), Postives = 260/296 (87.84%), Query Frame = 0 Query: 6 DPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTP 301 DP PLY +S+Y T DP PVRFVQVFQ++P LEPFY EWEK+FDVS+ F+ IRD++ +PI+A ILYLSFL+EGKKYIERR++EGKGP+NLG FPA WN FLA FS+ GA RVVPHFLFLFTHKDFK TVCEAPD AGYGDGAAG+WVMLFTVSK+FEL+DTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPG+YF+AMNY+VHA+MYSYYFLMELRLWPKW +P++IT+ QI QMLVGVG+T +A+ + DPSCA+VR LIPWCAAMYATYLYFFV FF+ERF A P Sbjct: 12 DPRPLYASSRYKTADPESPVRFVQVFQSLPWLEPFYMEWEKNFDVSSSFQVIRDNEALPIVATILYLSFLIEGKKYIERRRREGKGPINLGLFPAFWNAFLAAFSVLGATRVVPHFLFLFTHKDFKTTVCEAPDKAGYGDGAAGMWVMLFTVSKLFELVDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGIYFVAMNYSVHALMYSYYFLMELRLWPKWFNPMWITMAQILQMLVGVGITVSAFFFSRDPSCALVRGLIPWCAAMYATYLYFFVLFFLERFFPAFKPAAP 307
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585107618|gb|EWM25755.1| (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 276.944 bits (707), Expect = 3.315e-88 Identity = 141/296 (47.64%), Postives = 194/296 (65.54%), Query Frame = 0 Query: 27 FVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQADPS-CAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGAAPSNEGRDK 321 F+Q +Q P EPFYT EK FDV + + + W+P++++ILY + ++ +R PV A WN LA FSI GALR+VPH L+ T FKETVC P+ GDGA+GLW +LFT+SK+ EL+DT+ + LKG+ P+FLHWYHHVTVL +TW +YSAR+PG+YFIAMNYTVHAVMYSYYFLM ++ PKWL+P++IT +QI QM+ GV +T + Y DPS C VV ++ + + +Y +YLY F+EF V+RF P S+ K+ ++GR++ Sbjct: 37 FLQFWQLFPWSEPFYTRLEKEFDVRPWYLFVHANGWLPVVSIILYAAMVLLLPPITSKR------PVKCDTALAYWNLLLAAFSILGALRIVPHLLWFLTTHSFKETVCTPPERMN-GDGASGLWCLLFTLSKLVELVDTMFVCLKGRKPIFLHWYHHVTVLSFTWAAYSARHPGMYFIAMNYTVHAVMYSYYFLMAIKAKPKWLNPIYITFLQIFQMVAGVIITVYGFIYARDPSTCGVVPSVLYFQSVIYGSYLYLFLEFLVKRFFCPPQSVPPASRPVGKE------DQGREE 319
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585110649|gb|EWM28304.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 275.404 bits (703), Expect = 6.377e-88 Identity = 144/288 (50.00%), Postives = 183/288 (63.54%), Query Frame = 0 Query: 27 FVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAY--SYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGA 312 F Q+FQ IPA+EPFY EWEK +D S + ++ WVPI VILY+ + G+ ++ RK P +L + A WN L+LFSI G +RVVPH ++L K C AP+ YG+ A G WV F +SK+ EL+DT +VL+ K FLHWYHHVTVLL+TWF Y+ NPG+ F+AMNY+VHA+MY YYFLM +R+ P WL P FITLMQISQM+VGV TAA Y +A CAV +DL+ C MY+TYLY F EF V RF+ K T K + A Sbjct: 41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRK-----PFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPL-YGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA-TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKA 321
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|553178743|ref|XP_005852597.1| (fatty-acyl elongase [Nannochloropsis gaditana CCMP526] >gi|422295935|gb|EKU23234.1| fatty-acyl elongase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 267.7 bits (683), Expect = 6.267e-87 Identity = 124/163 (76.07%), Postives = 143/163 (87.73%), Query Frame = 0 Query: 6 DPAPLYETSQYITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVI 168 DP PLY +S+Y T DP PVRFVQVFQ++P LEPFY EWEK+FDVS+ F+ IRD++ +PI+A ILYLSFL+EGKKYIERR++EGKGP+NLG FPA WN FLA FS+ GA RVVPHFLFLFTHKDFK TVCEAPD AGYGDGAAGLWVMLFTVSK+FEL+DTV+ Sbjct: 12 DPRPLYASSRYKTADPESPVRFVQVFQSLPWLEPFYMEWEKNFDVSSSFQVIRDNQALPIVATILYLSFLIEGKKYIERRRREGKGPINLGLFPAFWNAFLAAFSVLGATRVVPHFLFLFTHKDFKTTVCEAPDKAGYGDGAAGLWVMLFTVSKLFELVDTVL 174
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585107617|gb|EWM25754.1| (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 255.758 bits (652), Expect = 3.173e-80 Identity = 135/309 (43.69%), Postives = 200/309 (64.72%), Query Frame = 0 Query: 2 SWFLDPAPLYETSQ-YITRDPVKPVRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSYQA-DPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASK 308 W+ P L T++ Y R+ F+Q +Q P LE FY +EK+F+ F + + WV +++ +Y+S ++ +++R + NL A WN FLA++S GA+RVVPH L+ + FK+TVC AP GDGA GLWV LFT+SKV EL+D++ + LKG+ P+FLHWYHHV+VL +TW ++ A +PG+YFIAMNYTVH+VMY+YYFLM ++ PKWL+P++IT MQI+QMLVGV ++ + Y + D SCAV ++ A +YA+YLY F++F ++RF + + K+A+ Sbjct: 15 QWYCPPETLTATTRVYTARNTT--YSFIQFWQLYPWLENFYAPFEKNFNPLPIFEFVSGNWWVVYISLAIYMSMIIFLPMIMKKRPLK-----NLSTPLACWNLFLAVYSTIGAVRVVPHLLWFMSTHTFKQTVCTAPYYIN-GDGATGLWVTLFTLSKVAELIDSLWICLKGRRPIFLHWYHHVSVLYFTWAAHEAAHPGMYFIAMNYTVHSVMYTYYFLMAIKAKPKWLNPIYITFMQIAQMLVGVIISCFGFYYSSMDASCAVDPFVLKVSAVIYASYLYLFMQFMIKRFFVKNARAGQEGKVAAS 315
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|553192576|ref|XP_005855601.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422293464|gb|EKU20764.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 237.269 bits (604), Expect = 4.886e-73 Identity = 133/281 (47.33%), Postives = 172/281 (61.21%), Query Frame = 0 Query: 25 VRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKW--VPIMAVILYLSFLVEGKKYIERR-KKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYS-ARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSY-QADPS-CAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKR 299 V F Q+FQ P L PFYTE+EK+F S+ + + W +P+ +Y +V G K +E R K E K + A WN L++FS G LR VPH L T FK+T+C P A YG+GA GLWVMLF SKV EL+DTV +V + FLHWYHH+TVLL+ W SY+ + GLYF+AMNY+VHAVMY+YY+L ++ WP W+ P IT+ QISQM+VGVG+ A++ Y DP C V + A MY +YLY F +FFV RFL R Sbjct: 29 VPFTQLFQHYPVLSPFYTEYEKNFHASS-YVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTAL------ACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHP-AETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPR 301
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|585111978|gb|EWM29442.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 238.039 bits (606), Expect = 1.141e-72 Identity = 133/281 (47.33%), Postives = 172/281 (61.21%), Query Frame = 0 Query: 25 VRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKW--VPIMAVILYLSFLVEGKKYIERR-KKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYS-ARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSY-QADPS-CAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKR 299 V F Q+FQ P L PFYTE+EK+F S+ + + W +P+ +Y +V G K +E R K E K + A WN L++FS G LR VPH L T FK+T+C P A YG+GA GLWVMLF SKV EL+DTV +V + FLHWYHH+TVLL+ W SY+ + GLYF+AMNY+VHAVMY+YY+L ++ WP W+ P IT+ QISQM+VGVG+ A++ Y DP C V + A MY +YLY F +FFV RFL R Sbjct: 29 VPFTQLFQHYPVLSPFYTEYEKNFHASS-YVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTAL------ACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHP-AETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPR 301
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|256750562|gb|ACV21066.1| (fatty acid elongase [Nannochloropsis oculata]) HSP 1 Score: 234.187 bits (596), Expect = 1.098e-71 Identity = 129/288 (44.79%), Postives = 175/288 (60.76%), Query Frame = 0 Query: 25 VRFVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKW--VPIMAVILYLSFLVEGKK-YIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYS-ARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSY-QADPS-CAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLA 306 V F Q+FQ P L+P YT++EK+F S + +D+ W +P+ +Y ++ G K + R K E K + A WN L++FS G +R VPH L FK+T+C P A YG+GA G+WVMLF SKV EL+DTV +V + FLHWYHH+TVLL+ W SY+ + GLYF+AMNY+VHA+MY+YY+L + WPKW+ P IT+ QISQM+VGVG+ A+++ + DP C V R + A MY +YLY F +FFV RFL R K A Sbjct: 31 VPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDT-WPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTAL------ACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHP-AETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSA 310
BLAST of EWM29833.1 vs. NCBI_GenBank
Match: gi|1210521613|dbj|GAX19603.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 216.468 bits (550), Expect = 3.417e-65 Identity = 119/272 (43.75%), Postives = 157/272 (57.72%), Query Frame = 0 Query: 35 PALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNP-GLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSY-QADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSK 304 P +E YT +EK +D ++ +P+ A I+Y + G+ Y +R + N A+WN FL++FS G LR PH TH F++ +C P YG G+ GLWV LF +SK EL+DT +V+ K +FLHWYHH+TVLLY W SY +P G+ F AMNYTVHA MY YYFLM LR+ PKW +P+ IT MQISQM+VGV T +Y Y D CA+ R MY +YL+ F +FF R+ S K +PV K Sbjct: 24 PQVEHLYTSFEKFYDPIPLLNWMKGQPGIPVAACIIYAVSIYYGQAYFAKRDRW-----NWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTT-YGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAECALDRGNNIAAFLMYGSYLFLFCQFFFSRYF--SLKSSPVKK 287 The following BLAST results are available for this feature:
BLAST of EWM29833.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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