rna8589, rna8589 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8589
Unique Name	rna8589
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1012
Alignment location	KK037249.1:347636..350198 +

Link to JBrowse

Properties


Property Name	Value
Product	transmembrane 9 superfamily member 3
Orig transcript id	gnl\|cribi\|Naga_100060g4.5496.mrna
Orig protein id	gnl\|cribi\|Naga_100060g4.5496
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:347636..350198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100060g4	gene8324	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8589	rna8589-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22128.1	cds8562	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:347636..350198+
coding sequence from alignment at KK037249.1:347636..350198+

mRNA sequence

>rna8589 ID=rna8589|Name=rna8589|organism=Nannochloropsis gaditana|type=mRNA|length=1012bp
GTGACCGTTTTCATCGGGTGGTGTGCGCAGCATGGCCTTTTGGCTCCCCT
TTCGATGTTGTATGAAGCATATCATCCAATACACAGGACCGCCGCCTTGG
CCAGAGACCGGGGGCGAGAACCTCGACCTCCCCCACCGTCTTCCAAGCTG
CCTCGATTCTACCCTCACTGCCCTGCTCTCTGTAGCTTACCCGTACGTTA
GGGATACCATGGAATTTTTTGGCTTTGGAAAGAAAGTTGAACCCATGGAA
GAGGCCAAAAAGTTGAAGCGCAGCATCGGCCGAGAGATACGATCGGTAGA
TCGAACGCTGATCCATATCGAACGGGAGGAGAGGAAAATTGTTAAAGAAA
TTCAAAAACTTGCCAAGCAGGGGGAGACTCGGCGCGGCGCATTGACCATT
TTGGCCAAGGATTTGGTTCGCTCACGGAAAACGCGCGAGAAGATGGTGGG
TGGGAAAGCCATGCTCGCCTCGGTACAAATGCAGATTCAGATGCAAATGT
CTACCATCAAGGTGGCGGGCTGCATGCAGAAATCGGCTGATGTATTGAAG
ACCTTGAACGCCTTGGTAAAGATCCCTGAATTGAGTAAAGTGTGCCAGGA
GATGGCGCGGGAGATGGAGAGAGCGGGCTTGGTGGAGGAAATGGTAGGAG
ACGCCATGGATAGCGTGGATGTCACGGATGAGGACGAGGTGGACATGGAG
GTGCAAAAGGTGCTGGAAGAGCTTGCCTTCAATATGATGAGCGACGCGCC
AGTCGAGCCCATGAAGGCCGTGCAGGAGGCGGGGGAGGCGGTAGGAGAGG
AAGCTGGGATGGATGAAGAGAGGGAGGAAATGGAGCTTAAGAAAATGAAG
GAACGCTTGAATGCGCTGTAAAATTTGTGTAACAGTAAGCTGGAGTCAAA
GGGAAAGTAGGACTACATTTACAGTTCACAACGGTGGGAAAATAGACGAA
AATTCTAGAACGTTCTTAGACTTGCATCGTTGATGCTGCATTGGACAGAG
AACTTCTTTGCC

protein sequence of rna8589

>rna8589-protein ID=rna8589-protein|Name=rna8589|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MMAACRRVVAFALLVSAGLVHRVAEAGERNHKYAEGDEVTLWVNKVGPYH
NPHETYEYYDLPFCKPVEGVETRRRSNSLGEQLEGHELMNSGYLLSFTKD
VAKTKVCSMKLSAEDAKTFASAVDNRYWYQLYLDDLPIWGMVGEADETGA
QSIYTHRKLSLGYNGPNVIEVNMTSENLVRIEEGANLDFTYEVTWIPSTT
AFANRFDRYLDVDFFGHQIHWLSIFNSTMMVVFLCGLVSLILFRTLRNDF
ARYAKEDLGGHATGSEHGISEESGWKQVHGDVFRAPLHLMFFSALYGIGC
QFLALVLVVVGWAIAGPLHGDVYEERGELVTSVIVAYALTCLVAGYTSGS
YYRQFFPTPRSEQSSQWQKTMLLTVFLFPVLVLTVVFGLNIIAEYYDTTH
ALHLSTIFKIFAIWLFVSLPLTVVGTLFGRHWAGKADFPCRINSMARPIP
LGPWYTHPALIAAVTGILPFGSIFIEMYFIFTSFWNYKFYYVYHFLLLVY
LILMVVSICTTIVAVYFLLNVENYHWQWLSFMASGSTAGYVFLYSIYYFA
VKTQMTGLLQTAFYFGYTFVFCAGLFLLCGALGVIGGSLFVRRIYSGLKI
D

mRNA from alignment at KK037249.1:347636..350198+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8589 ID=rna8589|Name=rna8589|organism=Nannochloropsis gaditana|type=mRNA|length=2563bp|location=Sequence derived from alignment at KK037249.1:347636..350198+ (Nannochloropsis gaditana)
tctcccttcatcGTCCCTCACTCaactcctttctttcttttgcgCACACA
CGTCATAGAGCCTGTCAGCTGAAATCTTTGTTGTCCTGTTGTTATGATGG
CCGCGTGCAGGAGGGTCGTCGCATTCGCCTTGCTCGTTAGCGCGGGCCTG
GTGCACCGGGTAGCAGAGGCCGGGGAACGCAACCATAAGTACGCCGAAGG
TGACGAGGTCACGCTGTGGGTGAACAAAGTGGGTCCGTACCACAACCCGC
ACGAGACATACGAATACTACGATTTGCCATTCTGCAAAccggtggaaggg
gtggagacacggcggaggagcaacTCGCTCGGCGAGCAGCTGGAGGGACA
TGAACTGATGAACAGCGGGTACCTCCTGTCCTTTACGAAGGATGTGGCAA
AGACCAAGGTCTGCTCGATGAAATTGAGCGCAGAGGACGCCAAGACCTTT
GCCTCGGCTGTGGACAACCGGTACTGGTACCAGCTCTACCTGGACGACCT
TCCGATCTGGGGCATGGTCGGAGAGGCGGACGAGACCGGCGCCCAGTCCA
TCTACACGCACCGGAAGCTGAGCTTGGGGTACAACGGGCCCAACGTTATC
GAAGTGAACATGACGAGCGAGAACCTGGTCCGGATCGAGGAGGGTGCCAA
TCTGGATTTCACGTACGAGGTGACCTGGATCCCAAGCACGACGGCCTTCG
CCAACCGTTTCGACCGTTACTTGGACGTTGATTTCTTCGGACACCAGATC
CACTGGCTCTCCATCTTCAATTCCACGATGAtggtcgtcttcctctgcgg
CCTGGTCAGCCTCATTCTGTTCAGAACTCTCCGGAACGACTTTGCGCGCT
ACGCCAAGGAGGACTTGGGGGGCCACGCGACGGGATCCGAGCATGGGATC
AGCGAAGAATCCGGCTGGAAACAGGTCCATGGAGACGTCTTCCGCGCGCC
CTTGCACCTGATGTTCTTCTCGGCCCTCTACGGCATCGGCTGCCAGTTCC
TGGCCCTGGTCTTGGTCGTGGTCGGGTGGGCCATCGCGGGCCCATTGCAC
GGGGACGTGTACGAGGAGCGGGGCGAGTTGGTCACCTCCGTCATCGTCGC
CTACGCCTTGACCTGCCTGGTGGCGGGCTACACGTCCGGGTCGTACTACC
GGCAGTTCTTCCCAACTCCGCGGTCGGAGCAGTCCTCCCAATGGCAGAAG
ACCATGCTCTTgaccgtcttcctctttcccgtcctcgtgctCACGGTCGT
CTTTGGCCTGAACATCATCGCCGAGTACTACGACACCACGCACGCCCTGC
ACCTCTCCACCATTTTCAAGGTGAGTGCCTGGTGCCACgctgggaaaggg
ggcgaggagagcgcgggAGGACATGGTGTCCCCGGTGCTCTGGGACGAGC
TTCCCCCCGCTTGCTCtctcctgcctgcctcctatcctcctttcccgtcc
cattcctccttacctctccacctctttAAGAACCTGCTGTTGCTGACCCC
GacacttccctcctcccctccccccagatCTTTGCTATCTGGCTCTTCGT
CTCGCTCCCCCTGACCGTGGTGGGCACCCTTTTCGGCCGGCACTGGGCTG
GGAAAGCCGACTTTCCTTGCCGCATCAACAGCATGGCGCGGCCCATTCCC
CTCGGTCCTTGGTACACGCACCCCGCCCTCATCGCGGCCGTGACcggcat
cctccccttcggcTCCATCTTCATCGAGATGTATTTTATTTTTACTAGCT
TTTGGAACTACAAGTTTTACTACGTCtatcacttcctcctcctcgtgtaC
CTGATCCTGATGGTGGTGAGCATCTGCACTACCATCGTTGCGGTCTACTT
CCTCTTGAACGTGGAGAACTACCACTGGCAGTGGCTCTCCTTCATGGCCT
CCGGATCCACGGCCGGCTACGTCTTCCTCTACTCCATCTACTACTTCGCC
GTGAAGACGCAAATGACGGGTCTTCTCCAGACGGCGTTCTACTTTGGCTA
CACCTTCGTCTTCTGCGCGGGACTCTTCCTTTTGTGCGGGGCCTTGGGGG
TGATCGGCGGGTCCTTGTTCGTGAGGAGGATTTATTCCGGGCTGAAGATA
GATTAGATTAGAGTTGGGGTTGGGGGCGTGCAAGCTGGCGTGGGAGAaaa
tgggcagggagggacgggcagCACGGGCTGCGGAAAGGGCCTTATCTCTT
GAGGCGCCACGGaaacagagaggaggagacatgcCGGTGGTTCTGTGGAG
AAGGATGAGCGTGGGCGACGGACCCCGTAGGGGAAGAgattgggaggagg
gcgaggtatCGGTGAAGGGCTGTGCTTGGCTTGTGTATCGACCAACGAGG
GGTTACAGAGGGCTGTTTGGTGTCATGGCGTTCCTTGGATGCGGGCatgg
gcagaggagggatgagaaggcgtgcgaaaggaaaaaggtgTCATAAAGGG
GCGGTAAAGCATTCAGACGCAGATAGCAAAAGGACTTGAGTTTATAAACC
AAAAAATGTGACATTGATGTCCAAAGACTTAACGTTGCGAACGAAACGGG
CCACCCCTCTGAA

Coding sequence (CDS) from alignment at KK037249.1:347636..350198+

>rna8589 ID=rna8589|Name=rna8589|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at KK037249.1:347636..350198+ (Nannochloropsis gaditana)
ATGATGGCCGCGTGCAGGAGGGTCGTCGCATTCGCCTTGCTCGTTAGCGC
GGGCCTGGTGCACCGGGTAGCAGAGGCCGGGGAACGCAACCATAAGTACG
CCGAAGGTGACGAGGTCACGCTGTGGGTGAACAAAGTGGGTCCGTACCAC
AACCCGCACGAGACATACGAATACTACGATTTGCCATTCTGCAAAccggt
ggaaggggtggagacacggcggaggagcaacTCGCTCGGCGAGCAGCTGG
AGGGACATGAACTGATGAACAGCGGGTACCTCCTGTCCTTTACGAAGGAT
GTGGCAAAGACCAAGGTCTGCTCGATGAAATTGAGCGCAGAGGACGCCAA
GACCTTTGCCTCGGCTGTGGACAACCGGTACTGGTACCAGCTCTACCTGG
ACGACCTTCCGATCTGGGGCATGGTCGGAGAGGCGGACGAGACCGGCGCC
CAGTCCATCTACACGCACCGGAAGCTGAGCTTGGGGTACAACGGGCCCAA
CGTTATCGAAGTGAACATGACGAGCGAGAACCTGGTCCGGATCGAGGAGG
GTGCCAATCTGGATTTCACGTACGAGGTGACCTGGATCCCAAGCACGACG
GCCTTCGCCAACCGTTTCGACCGTTACTTGGACGTTGATTTCTTCGGACA
CCAGATCCACTGGCTCTCCATCTTCAATTCCACGATGAtggtcgtcttcc
tctgcggCCTGGTCAGCCTCATTCTGTTCAGAACTCTCCGGAACGACTTT
GCGCGCTACGCCAAGGAGGACTTGGGGGGCCACGCGACGGGATCCGAGCA
TGGGATCAGCGAAGAATCCGGCTGGAAACAGGTCCATGGAGACGTCTTCC
GCGCGCCCTTGCACCTGATGTTCTTCTCGGCCCTCTACGGCATCGGCTGC
CAGTTCCTGGCCCTGGTCTTGGTCGTGGTCGGGTGGGCCATCGCGGGCCC
ATTGCACGGGGACGTGTACGAGGAGCGGGGCGAGTTGGTCACCTCCGTCA
TCGTCGCCTACGCCTTGACCTGCCTGGTGGCGGGCTACACGTCCGGGTCG
TACTACCGGCAGTTCTTCCCAACTCCGCGGTCGGAGCAGTCCTCCCAATG
GCAGAAGACCATGCTCTTgaccgtcttcctctttcccgtcctcgtgctCA
CGGTCGTCTTTGGCCTGAACATCATCGCCGAGTACTACGACACCACGCAC
GCCCTGCACCTCTCCACCATTTTCAAGatCTTTGCTATCTGGCTCTTCGT
CTCGCTCCCCCTGACCGTGGTGGGCACCCTTTTCGGCCGGCACTGGGCTG
GGAAAGCCGACTTTCCTTGCCGCATCAACAGCATGGCGCGGCCCATTCCC
CTCGGTCCTTGGTACACGCACCCCGCCCTCATCGCGGCCGTGACcggcat
cctccccttcggcTCCATCTTCATCGAGATGTATTTTATTTTTACTAGCT
TTTGGAACTACAAGTTTTACTACGTCtatcacttcctcctcctcgtgtaC
CTGATCCTGATGGTGGTGAGCATCTGCACTACCATCGTTGCGGTCTACTT
CCTCTTGAACGTGGAGAACTACCACTGGCAGTGGCTCTCCTTCATGGCCT
CCGGATCCACGGCCGGCTACGTCTTCCTCTACTCCATCTACTACTTCGCC
GTGAAGACGCAAATGACGGGTCTTCTCCAGACGGCGTTCTACTTTGGCTA
CACCTTCGTCTTCTGCGCGGGACTCTTCCTTTTGTGCGGGGCCTTGGGGG
TGATCGGCGGGTCCTTGTTCGTGAGGAGGATTTATTCCGGGCTGAAGATA
GATTAGATGATGGCCGCGTGCAGGAGGGTCGTCGCATTCGCCTTGCTCGT
TAGCGCGGGCCTGGTGCACCGGGTAGCAGAGGCCGGGGAACGCAACCATA
AGTACGCCGAAGGTGACGAGGTCACGCTGTGGGTGAACAAAGTGGGTCCG
TACCACAACCCGCACGAGACATACGAATACTACGATTTGCCATTCTGCAA
AccggtggaaggggtggagacacggcggaggagcaacTCGCTCGGCGAGC
AGCTGGAGGGACATGAACTGATGAACAGCGGGTACCTCCTGTCCTTTACG
AAGGATGTGGCAAAGACCAAGGTCTGCTCGATGAAATTGAGCGCAGAGGA
CGCCAAGACCTTTGCCTCGGCTGTGGACAACCGGTACTGGTACCAGCTCT
ACCTGGACGACCTTCCGATCTGGGGCATGGTCGGAGAGGCGGACGAGACC
GGCGCCCAGTCCATCTACACGCACCGGAAGCTGAGCTTGGGGTACAACGG
GCCCAACGTTATCGAAGTGAACATGACGAGCGAGAACCTGGTCCGGATCG
AGGAGGGTGCCAATCTGGATTTCACGTACGAGGTGACCTGGATCCCAAGC
ACGACGGCCTTCGCCAACCGTTTCGACCGTTACTTGGACGTTGATTTCTT
CGGACACCAGATCCACTGGCTCTCCATCTTCAATTCCACGATGAtggtcg
tcttcctctgcggCCTGGTCAGCCTCATTCTGTTCAGAACTCTCCGGAAC
GACTTTGCGCGCTACGCCAAGGAGGACTTGGGGGGCCACGCGACGGGATC
CGAGCATGGGATCAGCGAAGAATCCGGCTGGAAACAGGTCCATGGAGACG
TCTTCCGCGCGCCCTTGCACCTGATGTTCTTCTCGGCCCTCTACGGCATC
GGCTGCCAGTTCCTGGCCCTGGTCTTGGTCGTGGTCGGGTGGGCCATCGC
GGGCCCATTGCACGGGGACGTGTACGAGGAGCGGGGCGAGTTGGTCACCT
CCGTCATCGTCGCCTACGCCTTGACCTGCCTGGTGGCGGGCTACACGTCC
GGGTCGTACTACCGGCAGTTCTTCCCAACTCCGCGGTCGGAGCAGTCCTC
CCAATGGCAGAAGACCATGCTCTTgaccgtcttcctctttcccgtcctcg
tgctCACGGTCGTCTTTGGCCTGAACATCATCGCCGAGTACTACGACACC
ACGCACGCCCTGCACCTCTCCACCATTTTCAAGatCTTTGCTATCTGGCT
CTTCGTCTCGCTCCCCCTGACCGTGGTGGGCACCCTTTTCGGCCGGCACT
GGGCTGGGAAAGCCGACTTTCCTTGCCGCATCAACAGCATGGCGCGGCCC
ATTCCCCTCGGTCCTTGGTACACGCACCCCGCCCTCATCGCGGCCGTGAC
cggcatcctccccttcggcTCCATCTTCATCGAGATGTATTTTATTTTTA
CTAGCTTTTGGAACTACAAGTTTTACTACGTCtatcacttcctcctcctc
gtgtaCCTGATCCTGATGGTGGTGAGCATCTGCACTACCATCGTTGCGGT
CTACTTCCTCTTGAACGTGGAGAACTACCACTGGCAGTGGCTCTCCTTCA
TGGCCTCCGGATCCACGGCCGGCTACGTCTTCCTCTACTCCATCTACTAC
TTCGCCGTGAAGACGCAAATGACGGGTCTTCTCCAGACGGCGTTCTACTT
TGGCTACACCTTCGTCTTCTGCGCGGGACTCTTCCTTTTGTGCGGGGCCT
TGGGGGTGATCGGCGGGTCCTTGTTCGTGAGGAGGATTTATTCCGGGCTG
AAGATAGATTAG

Synonyms

Publications