rna8587, rna8587 (mRNA) Nannochloropsis gaditana

Overview
Namerna8587
Unique Namerna8587
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length848
Alignment locationKK037249.1:344741..345788 +

Link to JBrowse

Properties
Property NameValue
Producttim10-like protein
Orig transcript idgnl|cribi|Naga_100060g7.5498.mrna
Orig protein idgnl|cribi|Naga_100060g7.5498
GeneTim10
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:344741..345788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tim10gene8322Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8587rna8587-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22130.1cds8560Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8587 ID=rna8587|Name=rna8587|organism=Nannochloropsis gaditana|type=mRNA|length=848bp
CCCCTCTACTGTCTCTCCGAGCCTGGCTCTACCCCAATGTTTTCCCCTTA
TTTCCTCCCGTACCATCGTCTCCGGCCATGCTCCTACATGTTCATGCCAA
ACCACGTGTTACCATCTACACGATCACAGCGAAAGCTTTTCTCATCCCCG
CGATCACCCTACACGCTGTTTGCTTTCAGGTCCCGCGGGCTGTCAGGTGC
GAGGCGGGCAGGGGCTTTCCTCCGGAGCGTCCAAAAACCATGAAATTCTG
CCCAAACTGCAATTTTATCCTTTACCCTAAGGAGGACAAGGATGAACGCA
AGCTGGTATACTACTGCCGGTCACCGCGTTGCGATCATGAGGAAGACGCG
CCTGACCCATACGTCTTCCGCAACCAAGTAATCAAGACCCGCACCGTTAA
CCTCGACCACGTGCTGTCCGCTGTGGCCAACGACCCAACGCTCCAGCGGT
CCACTGCCGACTGCCCCCTATGCCACTACCACGAGGCGGTGCTCATCCAG
TCCACCCAGAATGTGAAATCGAACAAACTCACCTTGATTTTTGTCTGTTG
CAACCCGAATTGCGGGCATAAATGGACTGACGACGATCCTTGATACTTTG
ATGGAGGAAAGGAGGGAGGCAGGAAGGGAGGCAGGAAGGGAGGGAGGAAG
GGAGGGAGAAAAGGATGGAGGAAGGGAGGGAGGATATGGAGGGGTCTTTT
TTTGAGGCAGGCCTCTCAGTGTACAGAGAGGAAGGGAGGGAGGGAGGCAG
GGAAGGGAGGGCGGAATTTCGAGCATGTAAAGTAAAACAACTTCCACAGG
CCGCGGGCCCGGAGTCAAAGCCCGGCCACCGCGAGGCAGTCTTTCCCC
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protein sequence of rna8587

>rna8587-protein ID=rna8587-protein|Name=rna8587|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARY
NDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP
ASG
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mRNA from alignment at KK037249.1:344741..345788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8587 ID=rna8587|Name=rna8587|organism=Nannochloropsis gaditana|type=mRNA|length=1048bp|location=Sequence derived from alignment at KK037249.1:344741..345788+ (Nannochloropsis gaditana)
ATTTGCAAATGGACGGCCACTGGCTTTGTAAAGGCTATGGTTTAGCAAGG
CTGCCAGACCTGGCTTTGAGCATGTAGTttactgcctcctcccctctgcc
atCTTGTCACCCAATCGGGATGGCATTTACCGTCTGATTTAAACCATTTA
AATTTTATTTTCTCCTTTAAACCACCACTAGAGTAATTTTCGACGTGTAC
AAGCATGAGTAGCTTttttggaggtggaggcggcgctcAGCCGTCCTCTG
CGAGCAATCAGCAATTGAAGATGGCCAAAGCGGAGGTTAAGATGTACTCG
GATCTGTTCAATAAGTAAGTCGCATTCATCCGCCACTGGCTctctcattt
tttcttttttcacgGACGGTCTTAGTTGCAGTAAGTGTGCATGGGTATTC
CTCGCGACGGGTTGGGCATCTGACGCCGTTTTCgtgagaggaaaagagga
ggctcATGGCATGTCTCAGTCCCGCTCTCATTCTGACTCGCGCATCCACG
CCCTTCATTTTTTCACAGAATGTGCTCTCTTTGTTTTGAAAAATGTGTGG
CGCGGTACAATGACACGGACCTAAATTTGGGCGAGATGTCGTGTGTAGAT
CGCTGCGTCGGGAAGTACCTGGAGTCGCACATGAAGGTTGGGGAGGTATT
GAAGAACTTTGAAGAGCAGGCcaagcaacaacagcaagcGCAAGCTGGAA
TCCCGCCTGCCTCTGGATGAAAGTGGACCTTTGCGGCCTGAGAGGTGGAA
TGActcgagaaagagaggcagAAACGTGGTGGCACAATAAAGAGTGGAAT
TGTAAATATGGTAGGCCTGACATGCTTGGGAAGAAAGAcgcaaggagaga
gagggagaggtcatGAATCtagaaagagatggaaggggatgggTGCACTG
CGTGTGAGAGGGAAGCTcacaagaggaagcagggcatgCCTGTATGCATG
GAGTAGAGGACGTATCGAGGTCTGCCAGGCATGGTGACAGGAAGCGAGTA
CGGAAACGTGCAGGCAAAGAAGTTCTCTGTCCAATGCAGCATCAACGA
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Coding sequence (CDS) from alignment at KK037249.1:344741..345788+

>rna8587 ID=rna8587|Name=rna8587|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at KK037249.1:344741..345788+ (Nannochloropsis gaditana)
ATGAGTAGCTTttttggaggtggaggcggcgctcAGCCGTCCTCTGCGAG
CAATCAGCAATTGAAGATGGCCAAAGCGGAGGTTAAGATGTACTCGGATC
TGTTCAATAAAATGTGCTCTCTTTGTTTTGAAAAATGTGTGGCGCGGTAC
AATGACACGGACCTAAATTTGGGCGAGATGTCGTGTGTAGATCGCTGCGT
CGGGAAGTACCTGGAGTCGCACATGAAGGTTGGGGAGGTATTGAAGAACT
TTGAAGAGCAGGCcaagcaacaacagcaagcGCAAGCTGGAATCCCGCCT
GCCTCTGGATGAATGAGTAGCTTttttggaggtggaggcggcgctcAGCC
GTCCTCTGCGAGCAATCAGCAATTGAAGATGGCCAAAGCGGAGGTTAAGA
TGTACTCGGATCTGTTCAATAAAATGTGCTCTCTTTGTTTTGAAAAATGT
GTGGCGCGGTACAATGACACGGACCTAAATTTGGGCGAGATGTCGTGTGT
AGATCGCTGCGTCGGGAAGTACCTGGAGTCGCACATGAAGGTTGGGGAGG
TATTGAAGAACTTTGAAGAGCAGGCcaagcaacaacagcaagcGCAAGCT
GGAATCCCGCCTGCCTCTGGATGA
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Synonyms
Publications