EWM22130.1, cds8560 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|585102550|gb|EWM22130.1| (tim10-like protein [Nannochloropsis gaditana]) HSP 1 Score: 213.386 bits (542), Expect = 3.992e-70 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 1 MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103
MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG
Sbjct: 1 MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|1173950149|gb|OQR98127.1| (Mitochondrial Protein Translocase (MPT) Family [Thraustotheca clavata]) HSP 1 Score: 102.064 bits (253), Expect = 3.540e-26 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
+F G G A P+ + MAK E+ MY+DLFN+M +CF+KC R++D DLN+GEMSCVDRCVGKY+++H +VGE ++ + Q AG PP
Sbjct: 2 NFPGLGSQAAPAQQGPSPVTMAKVEMSMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 93
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|698786001|ref|XP_009826044.1| (hypothetical protein H257_03587 [Aphanomyces astaci] >gi|574118872|gb|ETV84352.1| hypothetical protein H257_03587 [Aphanomyces astaci]) HSP 1 Score: 98.9821 bits (245), Expect = 5.206e-25 Identity = 39/69 (56.52%), Postives = 59/69 (85.51%), Query Frame = 0
Query: 18 NQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEE 86
+QQ++MAK E++MY+DLFNKM +CF+KC R++D DLN+GEMSCVDRCVGKY+++H++VG ++ ++
Sbjct: 14 DQQMQMAKVEMEMYTDLFNKMAEVCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHLQVGTTMQRVQD 82
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|673034118|ref|XP_008871020.1| (hypothetical protein H310_07400 [Aphanomyces invadans] >gi|574473882|gb|ETW00885.1| hypothetical protein H310_07400 [Aphanomyces invadans]) HSP 1 Score: 97.0561 bits (240), Expect = 2.435e-24 Identity = 38/69 (55.07%), Postives = 60/69 (86.96%), Query Frame = 0
Query: 18 NQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEE 86
+QQ++MAK E++MY+DLFNKM +CF+KC R++D +LN+GEMSCVDRCVGKY+++H++VG+ ++ ++
Sbjct: 14 DQQMQMAKVEMEMYTDLFNKMAEVCFKKCNYRFHDAELNVGEMSCVDRCVGKYMQAHLQVGKTMQRVQD 82
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|669144870|ref|XP_008607997.1| (hypothetical protein SDRG_04116 [Saprolegnia diclina VS20] >gi|530740163|gb|EQC38405.1| hypothetical protein SDRG_04116 [Saprolegnia diclina VS20] >gi|1173950793|gb|OQR98736.1| Mitochondrial Protein Translocase (MPT) Family [Achlya hypogyna]) HSP 1 Score: 96.6709 bits (239), Expect = 4.287e-24 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
+F G G AQ + + MAK E+ MY+DLFN+M +CF+KC R++D DLN+GEMSCVDRCVGKY+++H +VGE ++ + Q AG PP
Sbjct: 2 NFPGLGAPAQQQQGPSP-VAMAKVEMAMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 92
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|813157495|ref|XP_012202096.1| (hypothetical protein SPRG_07572 [Saprolegnia parasitica CBS 223.65] >gi|641533329|gb|KDO27324.1| hypothetical protein SPRG_07572 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 96.6709 bits (239), Expect = 7.352e-24 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
+F G G AQ + + MAK E+ MY+DLFN+M +CF+KC R++D DLN+GEMSCVDRCVGKY+++H +VGE ++ + Q AG PP
Sbjct: 22 NFPGLGAPAQQQQGPSP-VAMAKVEMAMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 112
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|299116590|emb|CBN74778.1| (Mitochondrial protein import TIM9.10 complex subunit, Tim10 homolog [Ectocarpus siliculosus]) HSP 1 Score: 88.9669 bits (219), Expect = 5.847e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 21 LKMAKAEVKMYSDLFNKMCSLCFEKCVAR-YNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQ 92
+ +AK EV MYSDLF KM LCF+KCV + + ++DLN+GEMSCVDRCV KY+E+ KVG +LK EE QQ
Sbjct: 18 MDLAKQEVDMYSDLFTKMSGLCFKKCVVKMHGESDLNVGEMSCVDRCVSKYMEAQEKVGVILKRAEESLAAQQ 90
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|1189387830|gb|OSX74875.1| (hypothetical protein BU14_0263s0012 [Porphyra umbilicalis]) HSP 1 Score: 86.2705 bits (212), Expect = 3.501e-20 Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0
Query: 20 QLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
Q+ +A+ E++ Y+DLFN+M CF+KCV R++D +LN GE CVDRC+ KY+++ KVGE+L++ E+QA Q A G PP
Sbjct: 4 QMDVARMEMQFYTDLFNRMVDGCFKKCVPRFHDAELNTGEQVCVDRCIAKYMDAQNKVGEILQS-EQQA---QMATQGGPP 80
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|545707098|ref|XP_005705864.1| (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >gi|452822324|gb|EME29344.1| mitochondrial protein translocase, MPT family [Galdieria sulphuraria]) HSP 1 Score: 85.8853 bits (211), Expect = 5.022e-20 Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0
Query: 16 ASNQQ-LKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLK 82
A+NQ L AK E+ Y+D+FNKM CF+KC+ +YN+ DLN GEM CVDRCV KY E KVGEVL+
Sbjct: 2 ATNQSALDAAKTEMNFYADMFNKMADQCFKKCIPKYNEGDLNTGEMVCVDRCVAKYFEVTQKVGEVLQ 69
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|748507115|ref|XP_011111915.1| (hypothetical protein H072_6114 [Dactylellina haptotyla CBS 200.50] >gi|526199117|gb|EPS40079.1| hypothetical protein H072_6114 [Dactylellina haptotyla CBS 200.50]) HSP 1 Score: 84.7297 bits (208), Expect = 2.288e-19 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0
Query: 3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVAR-YNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103
S FG GG PSSA Q++ A+AE++M +D+FN++ + CF+KCV + Y +TDLN GE C+DRCV K+ E ++KV E ++N Q Q G P A G
Sbjct: 2 SMFGFGGAQGPSSA--QKIAAAEAELEMVTDMFNRLTNSCFKKCVPKDYRETDLNKGESVCLDRCVAKFFEVNVKVSEQMQN------QAASRQGGAPGAGG 95 The following BLAST results are available for this feature:
BLAST of EWM22130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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