EWM22130.1, cds8560 (CDS) Nannochloropsis gaditana

Overview
NameEWM22130.1
Unique Namecds8560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:344945..345054 +
Alignment locationKK037249.1:345259..345460 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22130.1
Producttim10-like protein
Orig transcript idgnl|cribi|Naga_100060g7.5498.mrna
GeneTim10
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:344945..345054 +
KK037249.1supercontigKK037249.1:345259..345460 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0045039protein import into mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008565protein transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0042719mitochondrial intermembrane space protein transporter complex
Vocabulary: INTERPRO
TermDefinition
IPR027100Tim10
IPR027247Tim10/Tim12
IPR004217Tim10/DDP_fam_Znf
Homology
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|585102550|gb|EWM22130.1| (tim10-like protein [Nannochloropsis gaditana])

HSP 1 Score: 213.386 bits (542), Expect = 3.992e-70
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103
            MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG
Sbjct:    1 MSSFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|1173950149|gb|OQR98127.1| (Mitochondrial Protein Translocase (MPT) Family [Thraustotheca clavata])

HSP 1 Score: 102.064 bits (253), Expect = 3.540e-26
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query:    3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
            +F G G  A P+      + MAK E+ MY+DLFN+M  +CF+KC  R++D DLN+GEMSCVDRCVGKY+++H +VGE ++      + Q    AG PP
Sbjct:    2 NFPGLGSQAAPAQQGPSPVTMAKVEMSMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 93          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|698786001|ref|XP_009826044.1| (hypothetical protein H257_03587 [Aphanomyces astaci] >gi|574118872|gb|ETV84352.1| hypothetical protein H257_03587 [Aphanomyces astaci])

HSP 1 Score: 98.9821 bits (245), Expect = 5.206e-25
Identity = 39/69 (56.52%), Postives = 59/69 (85.51%), Query Frame = 0
Query:   18 NQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEE 86
            +QQ++MAK E++MY+DLFNKM  +CF+KC  R++D DLN+GEMSCVDRCVGKY+++H++VG  ++  ++
Sbjct:   14 DQQMQMAKVEMEMYTDLFNKMAEVCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHLQVGTTMQRVQD 82          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|673034118|ref|XP_008871020.1| (hypothetical protein H310_07400 [Aphanomyces invadans] >gi|574473882|gb|ETW00885.1| hypothetical protein H310_07400 [Aphanomyces invadans])

HSP 1 Score: 97.0561 bits (240), Expect = 2.435e-24
Identity = 38/69 (55.07%), Postives = 60/69 (86.96%), Query Frame = 0
Query:   18 NQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEE 86
            +QQ++MAK E++MY+DLFNKM  +CF+KC  R++D +LN+GEMSCVDRCVGKY+++H++VG+ ++  ++
Sbjct:   14 DQQMQMAKVEMEMYTDLFNKMAEVCFKKCNYRFHDAELNVGEMSCVDRCVGKYMQAHLQVGKTMQRVQD 82          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|669144870|ref|XP_008607997.1| (hypothetical protein SDRG_04116 [Saprolegnia diclina VS20] >gi|530740163|gb|EQC38405.1| hypothetical protein SDRG_04116 [Saprolegnia diclina VS20] >gi|1173950793|gb|OQR98736.1| Mitochondrial Protein Translocase (MPT) Family [Achlya hypogyna])

HSP 1 Score: 96.6709 bits (239), Expect = 4.287e-24
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query:    3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
            +F G G  AQ     +  + MAK E+ MY+DLFN+M  +CF+KC  R++D DLN+GEMSCVDRCVGKY+++H +VGE ++      + Q    AG PP
Sbjct:    2 NFPGLGAPAQQQQGPSP-VAMAKVEMAMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 92          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|813157495|ref|XP_012202096.1| (hypothetical protein SPRG_07572 [Saprolegnia parasitica CBS 223.65] >gi|641533329|gb|KDO27324.1| hypothetical protein SPRG_07572 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 96.6709 bits (239), Expect = 7.352e-24
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query:    3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
            +F G G  AQ     +  + MAK E+ MY+DLFN+M  +CF+KC  R++D DLN+GEMSCVDRCVGKY+++H +VGE ++      + Q    AG PP
Sbjct:   22 NFPGLGAPAQQQQGPSP-VAMAKVEMAMYTDLFNRMAEMCFKKCNYRFHDADLNVGEMSCVDRCVGKYMQAHHQVGETMQ------RVQNSMMAGNPP 112          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|299116590|emb|CBN74778.1| (Mitochondrial protein import TIM9.10 complex subunit, Tim10 homolog [Ectocarpus siliculosus])

HSP 1 Score: 88.9669 bits (219), Expect = 5.847e-21
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   21 LKMAKAEVKMYSDLFNKMCSLCFEKCVAR-YNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQ 92
            + +AK EV MYSDLF KM  LCF+KCV + + ++DLN+GEMSCVDRCV KY+E+  KVG +LK  EE    QQ
Sbjct:   18 MDLAKQEVDMYSDLFTKMSGLCFKKCVVKMHGESDLNVGEMSCVDRCVSKYMEAQEKVGVILKRAEESLAAQQ 90          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|1189387830|gb|OSX74875.1| (hypothetical protein BU14_0263s0012 [Porphyra umbilicalis])

HSP 1 Score: 86.2705 bits (212), Expect = 3.501e-20
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0
Query:   20 QLKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPP 100
            Q+ +A+ E++ Y+DLFN+M   CF+KCV R++D +LN GE  CVDRC+ KY+++  KVGE+L++ E+QA   Q A  G PP
Sbjct:    4 QMDVARMEMQFYTDLFNRMVDGCFKKCVPRFHDAELNTGEQVCVDRCIAKYMDAQNKVGEILQS-EQQA---QMATQGGPP 80          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|545707098|ref|XP_005705864.1| (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >gi|452822324|gb|EME29344.1| mitochondrial protein translocase, MPT family [Galdieria sulphuraria])

HSP 1 Score: 85.8853 bits (211), Expect = 5.022e-20
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0
Query:   16 ASNQQ-LKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLK 82
            A+NQ  L  AK E+  Y+D+FNKM   CF+KC+ +YN+ DLN GEM CVDRCV KY E   KVGEVL+
Sbjct:    2 ATNQSALDAAKTEMNFYADMFNKMADQCFKKCIPKYNEGDLNTGEMVCVDRCVAKYFEVTQKVGEVLQ 69          
BLAST of EWM22130.1 vs. NCBI_GenBank
Match: gi|748507115|ref|XP_011111915.1| (hypothetical protein H072_6114 [Dactylellina haptotyla CBS 200.50] >gi|526199117|gb|EPS40079.1| hypothetical protein H072_6114 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 84.7297 bits (208), Expect = 2.288e-19
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0
Query:    3 SFFGGGGGAQPSSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVAR-YNDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEEQAKQQQQAQAGIPPASG 103
            S FG GG   PSSA  Q++  A+AE++M +D+FN++ + CF+KCV + Y +TDLN GE  C+DRCV K+ E ++KV E ++N      Q    Q G P A G
Sbjct:    2 SMFGFGGAQGPSSA--QKIAAAEAELEMVTDMFNRLTNSCFKKCVPKDYRETDLNKGESVCLDRCVAKFFEVNVKVSEQMQN------QAASRQGGAPGAGG 95          
The following BLAST results are available for this feature:
BLAST of EWM22130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102550|gb|EWM22130.1|3.992e-70100.00tim10-like protein [Nannochloropsis gaditana][more]
gi|1173950149|gb|OQR98127.1|3.540e-2647.96Mitochondrial Protein Translocase (MPT) Family [Th... [more]
gi|698786001|ref|XP_009826044.1|5.206e-2556.52hypothetical protein H257_03587 [Aphanomyces astac... [more]
gi|673034118|ref|XP_008871020.1|2.435e-2455.07hypothetical protein H310_07400 [Aphanomyces invad... [more]
gi|669144870|ref|XP_008607997.1|4.287e-2447.96hypothetical protein SDRG_04116 [Saprolegnia dicli... [more]
gi|813157495|ref|XP_012202096.1|7.352e-2447.96hypothetical protein SPRG_07572 [Saprolegnia paras... [more]
gi|299116590|emb|CBN74778.1|5.847e-2158.90Mitochondrial protein import TIM9.10 complex subun... [more]
gi|1189387830|gb|OSX74875.1|3.501e-2049.38hypothetical protein BU14_0263s0012 [Porphyra umbi... [more]
gi|545707098|ref|XP_005705864.1|5.022e-2058.82mitochondrial protein translocase, MPT family [Gal... [more]
gi|748507115|ref|XP_011111915.1|2.288e-1945.10hypothetical protein H072_6114 [Dactylellina hapto... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8587rna8587Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications