rna8576, rna8576 (mRNA) Nannochloropsis gaditana

Overview
Namerna8576
Unique Namerna8576
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1572
Alignment locationKK037249.1:316476..317548 -

Link to JBrowse

Properties
Property NameValue
Productadp-ribosylation factor-like protein 2
Orig transcript idgnl|cribi|Naga_100060g19.5488.mrna
Orig protein idgnl|cribi|Naga_100060g19.5488
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:316476..317548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100060g19gene8312Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8576rna8576-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22120.1cds8549Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8576 ID=rna8576|Name=rna8576|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp
CCATCTTTCCTCTTCCTACAGCCTGTGCCATGCGTCACTAAGCATTCACT
CACGTGCATCCTCGTGCATGCATGCGCATCTCTTTTCGCGCCTATCACAG
GTCGGTCCCGTGCTTCCTTTCGCCCCGGGTGTTCCGAGATGCCGCCTGTT
TCTAACGGAAGGCCGAAGGGGGGCCACGAGGCAGAAAACGACGACACACA
AGCGTCCAAGAACCCATTCACACGCTATTACGCCCAACTCCTTCATCAAC
AAAACATGATGCAGGACAACATTCGCACCGGCACCTACCGAAACGCTTTC
CTAACACACAAAGCTGATTTTCAAGACAAGGTTGTCCTTGACGTGGGAAC
GGGCACAGGGATATTGGCATTTTTCGCCATCCAGGCAGGCGCCCGCAAGG
TGTACGCGGTGGAAGCCAGCGGGATGGCCAAGCATGCCGAAACGCTAGTG
AAGGCAAACGGATTGGAGGGAAGGATCATGGTGGTGAAGAAAAGGGTGGA
AGAGATGGAACTACCGGAAATGGTGGACATTATTGTCTCCGAGCCGATTG
GGTTCCTGTTGGTGCATGAACGAATGTTGGAGACGTACCTAACAGCACGT
GATAAATGGCTCAAACAGGGGGGGCTGATGTTTCCAAATGCCGGGGACAT
CGTCATGGTCCCTTTCACAGACGAGTTGCTTTACAACGAGCAGTTGGGAA
AGACGGCTTTCTGGTCCACCTCGAAAGATTTCTACGGCGTCGACCTGACG
AGCCTGCAAAAAGACGCCCAAGCCGAATATTTCGCGCAGCCTGTGGTCGG
TTACTTTCATCCCTCGTGCGTGCTTGCGCCCTCTGCGCCGGTGCGGCACC
GGGTGGATTTCCTGTGCGTGACACACGCAGATTTGCAAAGCTTCCAGGTG
CCTTTTACGTTTCGGGCGGAACGCACTGCCCTCATGCATGGGATGGGTTG
CTGGTTCGACATCGAGTTCGCAGGGTCTGGGGCTGGCGGTAATACGCCCG
TGGTGCTGTCGACCAGTCCCGCGGCACCTGGGACGCACTGGTATCAATGT
CGGTTGCTCTTACCGGAGCCCATCGCGGTAAACAGGGGACAGACAGTCAG
TGGCTCGATGCAATTCACGGCAAACGAGCATTTTTCTTATGATTTGTTGC
TCACAGTACGCTTGGACGGGACGAACATTCAATGTTCCACTGCAATTTTT
TTGCAGGACCAAAGCTATCATTACTTGAATCATCCTGTGGTGACACCCGT
GGGGGATCCACAGGCAGCGGGAATTGGGGCTTTGGGTGGGGAGGGAGGAA
ACTGGGCACCTGCCATGAACACAACTGCCTGACGTCATTCAGTTTCAAGT
TTGTATTGGTCAACGTATTTAAAAGCATGGTCATAAAGAGTCGGTCGTCA
TCTCTAAAATTGAAAATGATCAAAAATGAGAAAGAAATGGTAGGAGGCGA
AATTGAGGGAAGAATACGAGACACCGGGAGGAATCGAGGCAACTCAGTGG
TGTAATTCATTGCTTTCTAAATAACGCATGGTAAATTCAGTAAAGAAATC
TAAGTCGGAGGAAATACAATAT
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protein sequence of rna8576

>rna8576-protein ID=rna8576-protein|Name=rna8576|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGF
NIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLE
VCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFA
KGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN
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mRNA from alignment at KK037249.1:316476..317548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8576 ID=rna8576|Name=rna8576|organism=Nannochloropsis gaditana|type=mRNA|length=1073bp|location=Sequence derived from alignment at KK037249.1:316476..317548- (Nannochloropsis gaditana)
ATGGGTTTGCTTTCTATACTCAAGGTACGTGGAGGCTTGATGGATATTGC
AGCGACAGTCGTTATATAAATGGAATTATTTGTGTGGGAAACGCGGCTTC
TCATATTACGTACTTTCTGGCTCTTTCAATCTTCTTTCCGTTCTCGCCAT
TCCCGCTTTTGGATGCCTGAATCGCGTTATAACGTGTGCAGAAAGTCAAG
CGAAAAGAGAAAGAGATGCGTCTCCTGATTCTTGGGCTAGATAATGCCGG
TAAAACGACAATTTTGAAGGTAAGAATAGTGAATACACATCAAACGGCGC
AACAGGATGAATGAAACAATATGGATACATGATGTCAGAAAAATAGGGTC
ATCGGGCCACTTTGAATAGTGGTCTTATGAAGACATGGTGACGTTGTGCA
TGGTACAATTGTTGGATATCGATATGGGATAGAATGGCATCCTTTGGATG
TTGAAAGGCGAGGTAGAAAAGGTGAAAAATTCATGTCTTTCGAGCAAGTT
AAATACGGTGAGCTTTGAGTGGATTATGGAAGAAGGCAATAGGGTGTAAG
ATGGGCAAGACCATTAAAGTTCATAGAATATTTTCTTCCCTGGTCTACTT
TTTCCTCGAAGAAATTTAACGGCGAGGAAATAAGCACCATTGAGCCCACC
CTCGGCTTCAACATCAAGACCCTCGAATATCAAGGATACCTTTTGAACGT
GTGGGACGTAGGGGGGCAGCAGACGATCCGTTCCTACTGGCGAAACTACT
TTGAAGCGACGGACGGTTTGATATGGGTCGTGGATAGCGCAGACCGGCGA
CGGCTAGAAGTGTGCAGACAGGAACTTCACGCGTTGCTCCAGCAGGAAAA
GCTGGCGGGGGCCTCCTTGTTGGTATTTGCGAACAAACAGGACTTACAAG
GAGCACTTCCCCCCGGCGAGATCGCACTGACATTGGGATTGGAGGACGAG
GCGTTTGCGAAAGGACGGCATTGGACGATCGTAGGCTGCAGTGCGATGAC
GGGCGACGGGCTCGAGCACGGAGTTGGATGGATGGTCAGGGACATTGCCA
GCCGGATATTCATGTTAAATTAA
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Coding sequence (CDS) from alignment at KK037249.1:316476..317548-

>rna8576 ID=rna8576|Name=rna8576|organism=Nannochloropsis gaditana|type=CDS|length=1692bp|location=Sequence derived from alignment at KK037249.1:316476..317548- (Nannochloropsis gaditana)
AAATTTAACGGCGAGGAAATAAGCACCATTGAGCCCACCCTCGGCTTCAA
CATCAAGACCCTCGAATATCAAGGATACCTTTTGAACGTGTGGGACGTAG
GGGGGCAGCAGACGATCCGTTCCTACTGGCGAAACTACTTTGAAGCGACG
GACGGTTTGATATGGGTCGTGGATAGCGCAGACCGGCGACGGCTAGAAGT
GTGCAGACAGGAACTTCACGCGTTGCTCCAGCAGGAAAAGCTGGCGGGGG
CCTCCTTGTTGGTATTTGCGAACAAACAGGACTTACAAGGAGCACTTCCC
CCCGGCGAGATCGCACTGACATTGGGATTGGAGGACGAGGCGTTTGCGAA
AGGACGGCATTGGACGATCGTAGGCTGCAGTGCGATGACGGGCGACGGGC
TCGAGCACGGAGTTGGATGGATGGTCAGGGACATTGCCAGCCGGATATTC
ATGTTAAATTAAAAAGTCAAGCGAAAAGAGAAAGAGATGCGTCTCCTGAT
TCTTGGGCTAGATAATGCCGGTAAAACGACAATTTTGAAGATGGGTTTGC
TTTCTATACTCAAGAAATTTAACGGCGAGGAAATAAGCACCATTGAGCCC
ACCCTCGGCTTCAACATCAAGACCCTCGAATATCAAGGATACCTTTTGAA
CGTGTGGGACGTAGGGGGGCAGCAGACGATCCGTTCCTACTGGCGAAACT
ACTTTGAAGCGACGGACGGTTTGATATGGGTCGTGGATAGCGCAGACCGG
CGACGGCTAGAAGTGTGCAGACAGGAACTTCACGCGTTGCTCCAGCAGGA
AAAGCTGGCGGGGGCCTCCTTGTTGGTATTTGCGAACAAACAGGACTTAC
AAGGAGCACTTCCCCCCGGCGAGATCGCACTGACATTGGGATTGGAGGAC
GAGGCGTTTGCGAAAGGACGGCATTGGACGATCGTAGGCTGCAGTGCGAT
GACGGGCGACGGGCTCGAGCACGGAGTTGGATGGATGGTCAGGGACATTG
CCAGCCGGATATTCATGTTAAATTAAAAAGTCAAGCGAAAAGAGAAAGAG
ATGCGTCTCCTGATTCTTGGGCTAGATAATGCCGGTAAAACGACAATTTT
GAAGATGGGTTTGCTTTCTATACTCAAGAAATTTAACGGCGAGGAAATAA
GCACCATTGAGCCCACCCTCGGCTTCAACATCAAGACCCTCGAATATCAA
GGATACCTTTTGAACGTGTGGGACGTAGGGGGGCAGCAGACGATCCGTTC
CTACTGGCGAAACTACTTTGAAGCGACGGACGGTTTGATATGGGTCGTGG
ATAGCGCAGACCGGCGACGGCTAGAAGTGTGCAGACAGGAACTTCACGCG
TTGCTCCAGCAGGAAAAGCTGGCGGGGGCCTCCTTGTTGGTATTTGCGAA
CAAACAGGACTTACAAGGAGCACTTCCCCCCGGCGAGATCGCACTGACAT
TGGGATTGGAGGACGAGGCGTTTGCGAAAGGACGGCATTGGACGATCGTA
GGCTGCAGTGCGATGACGGGCGACGGGCTCGAGCACGGAGTTGGATGGAT
GGTCAGGGACATTGCCAGCCGGATATTCATGTTAAATTAAAAAGTCAAGC
GAAAAGAGAAAGAGATGCGTCTCCTGATTCTTGGGCTAGATAATGCCGGT
AAAACGACAATTTTGAAGATGGGTTTGCTTTCTATACTCAAG
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Synonyms
Publications