EWM22120.1, cds8549 (CDS) Nannochloropsis gaditana

Overview
NameEWM22120.1
Unique Namecds8549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:317525..317548 -
Alignment locationKK037249.1:317280..317357 -
Alignment locationKK037249.1:316476..316937 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22120.1
Productadp-ribosylation factor-like protein 2
Orig transcript idgnl|cribi|Naga_100060g19.5488.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:317525..317548 -
KK037249.1supercontigKK037249.1:317280..317357 -
KK037249.1supercontigKK037249.1:316476..316937 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0006810transport
GO:0016043cellular component organization
GO:0009791post-embryonic development
GO:0007165signal transduction
GO:0009790embryo development
GO:0007264small GTPase mediated signal transduction
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF
IPR006687Small_GTPase_SAR1
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|585102540|gb|EWM22120.1| (adp-ribosylation factor-like protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 2.260e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN
Sbjct:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|698780875|ref|XP_009823481.1| (hypothetical protein H257_01803 [Aphanomyces astaci] >gi|574121205|gb|ETV86682.1| hypothetical protein H257_01803 [Aphanomyces astaci])

HSP 1 Score: 287.73 bits (735), Expect = 5.453e-97
Identity = 139/186 (74.73%), Postives = 160/186 (86.02%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFML 186
            MGLL+ILKKVKRKEKE+R+L+LGLDNAGKTTILKKF G++IS+I PTLGF+I+TLEY+ Y LNVWDVGGQQTIRSYWRNYFE TDGL+WVVDSADRRRLE C++EL ALL QEKLAGA+LL+FANKQDL GAL P +I L LGL +  FA  RHW I  CSA TGDGL  G+ WMV DI++RI+ML
Sbjct:    1 MGLLTILKKVKRKEKELRILMLGLDNAGKTTILKKFMGQDISSISPTLGFDIQTLEYKQYKLNVWDVGGQQTIRSYWRNYFEQTDGLVWVVDSADRRRLEDCKRELVALLTQEKLAGATLLIFANKQDLPGALSPEDIVLALGLHESQFA-NRHWKIHSCSAFTGDGLADGIDWMVSDISNRIYML 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|673024808|ref|XP_008866365.1| (hypothetical protein H310_04027 [Aphanomyces invadans] >gi|574477931|gb|ETW04927.1| hypothetical protein H310_04027 [Aphanomyces invadans])

HSP 1 Score: 288.115 bits (736), Expect = 9.618e-97
Identity = 138/186 (74.19%), Postives = 160/186 (86.02%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFML 186
            MGLL+ILKKVK+KEKE+R+L+LGLDNAGKTTILKKF G++I++I PTLGF+I+TLEY+ Y LNVWDVGGQQTIRSYWRNYFE TDGL+WVVDSADRRRLE C++EL ALL QEKLAGA+LL+FANKQDL GAL P +I L LGL +  FA  RHW I  CSA TGDGL  G+ WMV DI++RIFML
Sbjct:   22 MGLLTILKKVKQKEKELRILMLGLDNAGKTTILKKFMGQDITSISPTLGFDIQTLEYKQYKLNVWDVGGQQTIRSYWRNYFEQTDGLVWVVDSADRRRLEACKRELMALLTQEKLAGATLLIFANKQDLPGALSPEDIVLALGLHERQFA-NRHWKIQSCSAFTGDGLADGIDWMVNDISNRIFML 206          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|960487145|ref|XP_014758272.1| (PREDICTED: ADP-ribosylation factor-like protein 2 [Brachypodium distachyon] >gi|944050032|gb|KQJ85670.1| hypothetical protein BRADI_4g00930 [Brachypodium distachyon] >gi|944050033|gb|KQJ85671.1| hypothetical protein BRADI_4g00930 [Brachypodium distachyon] >gi|944050034|gb|KQJ85672.1| hypothetical protein BRADI_4g00930 [Brachypodium distachyon])

HSP 1 Score: 281.182 bits (718), Expect = 2.812e-94
Identity = 132/187 (70.59%), Postives = 158/187 (84.49%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT++YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+LAGASLLVFANKQD+QGAL P EIA  L L   A  K RHW IVGCSA TGDGL  G  W+V+D+ASRI++L+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIQYQKYSLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDVRRLDDCRAELHNLLKEERLAGASLLVFANKQDIQGALKPAEIAKVLNL--AAMDKDRHWKIVGCSAYTGDGLLQGFDWLVQDVASRIYVLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|1070903905|gb|OEL15889.1| (ADP-ribosylation factor-like protein 2 [Dichanthelium oligosanthes])

HSP 1 Score: 280.796 bits (717), Expect = 3.351e-94
Identity = 132/187 (70.59%), Postives = 158/187 (84.49%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT++YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+LAGASLLVFANKQD+QGAL P EIA  L L   A  K RHW IVGCSA TGDGL  G  W+V+D+ASRI++L+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIKYQKYSLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDVRRLDDCRAELHNLLKEERLAGASLLVFANKQDIQGALKPAEIAKVLDL--AAMEKSRHWQIVGCSAATGDGLLQGFDWLVQDVASRIYVLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|514755461|ref|XP_004963287.1| (PREDICTED: ADP-ribosylation factor-like protein 2 [Setaria italica] >gi|944253118|gb|KQL17381.1| hypothetical protein SETIT_023376mg [Setaria italica])

HSP 1 Score: 280.796 bits (717), Expect = 3.780e-94
Identity = 132/187 (70.59%), Postives = 158/187 (84.49%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT++YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+LAGASLLVFANKQD+QGAL P EIA  L L   A  K RHW IVGCSA TGDGL  G  W+V+D+ASRI++L+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIKYQKYSLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDIRRLDDCRAELHNLLKEERLAGASLLVFANKQDIQGALKPAEIAKVLDL--AAMEKSRHWQIVGCSAFTGDGLLQGFDWLVQDVASRIYVLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|1111018103|ref|XP_019260066.1| (PREDICTED: ADP-ribosylation factor-like protein 2 [Nicotiana attenuata] >gi|1102293442|gb|OIT39440.1| adp-ribosylation factor-like protein 2 [Nicotiana attenuata])

HSP 1 Score: 280.411 bits (716), Expect = 4.312e-94
Identity = 132/187 (70.59%), Postives = 157/187 (83.96%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT+ YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+L+GASLL+FANKQD+QGAL P EIA  L L  EA    RHW IVGCSA TGDGL  G  W+V+DIASRI+ML+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCRYELHNLLKEERLSGASLLIFANKQDIQGALSPDEIAKVLNL--EAMDNSRHWRIVGCSAYTGDGLLDGFDWLVQDIASRIYMLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|1026019101|ref|XP_016543815.1| (PREDICTED: ADP-ribosylation factor-like protein 2 [Capsicum annuum])

HSP 1 Score: 280.411 bits (716), Expect = 4.655e-94
Identity = 131/187 (70.05%), Postives = 156/187 (83.42%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT+ Y  Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+L+GASLL+FANKQD+QGAL P EIA  L L  EA    RHW IVGCSA TGDGL  G  W+VRD+ASRI+ML+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCRSELHNLLKEERLSGASLLIFANKQDIQGALSPDEIAKVLNL--EAMDNSRHWRIVGCSACTGDGLLEGFDWLVRDVASRIYMLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|1149804419|ref|XP_020162182.1| (ADP-ribosylation factor-like protein 2 [Aegilops tauschii subsp. tauschii] >gi|146760225|emb|CAM58988.1| small G-protein [Hordeum vulgare subsp. vulgare] >gi|326521694|dbj|BAK00423.1| predicted protein [Hordeum vulgare subsp. vulgare] >gi|475522295|gb|EMT06731.1| Putative ADP-ribosylation factor [Aegilops tauschii])

HSP 1 Score: 280.411 bits (716), Expect = 5.252e-94
Identity = 132/187 (70.59%), Postives = 158/187 (84.49%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT++YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+LAG+SLLVFANKQD+QGAL P EIA  L L  E   K RHW IVGCSA TGDGL  G  W+V+DIASRI++L+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIQYQKYSLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDVRRLDDCRAELHNLLKEERLAGSSLLVFANKQDIQGALKPDEIAKVLNL--EVMNKDRHWKIVGCSAYTGDGLLQGFDWLVQDIASRIYVLD 185          
BLAST of EWM22120.1 vs. NCBI_GenBank
Match: gi|460394567|ref|XP_004242873.1| (PREDICTED: ADP-ribosylation factor-like protein 2 [Solanum lycopersicum] >gi|565391781|ref|XP_006361590.1| PREDICTED: ADP-ribosylation factor-like protein 2 isoform X2 [Solanum tuberosum] >gi|970042121|ref|XP_015082448.1| PREDICTED: ADP-ribosylation factor-like protein 2 [Solanum pennellii])

HSP 1 Score: 280.026 bits (715), Expect = 6.757e-94
Identity = 131/187 (70.05%), Postives = 157/187 (83.96%), Query Frame = 0
Query:    1 MGLLSILKKVKRKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGFNIKTLEYQGYLLNVWDVGGQQTIRSYWRNYFEATDGLIWVVDSADRRRLEVCRQELHALLQQEKLAGASLLVFANKQDLQGALPPGEIALTLGLEDEAFAKGRHWTIVGCSAMTGDGLEHGVGWMVRDIASRIFMLN 187
            MGLLSI++K+KRKEKEMR+L++GLDN+GKTTI+ K NGE+ S I PTLGFNIKT+ YQ Y LN+WDVGGQ+TIRSYWRNYFE TDGL+WVVDS+D RRL+ CR ELH LL++E+L+GASLL+FANKQD+QGAL P EIA  L L  EA    RHW IVGCSA TGDGL  G  W+V+D+ASRI+ML+
Sbjct:    1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCRYELHNLLKEERLSGASLLIFANKQDIQGALSPDEIAKVLNL--EAMDNSRHWRIVGCSAYTGDGLLEGFDWLVQDVASRIYMLD 185          
The following BLAST results are available for this feature:
BLAST of EWM22120.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102540|gb|EWM22120.1|2.260e-134100.00adp-ribosylation factor-like protein 2 [Nannochlor... [more]
gi|698780875|ref|XP_009823481.1|5.453e-9774.73hypothetical protein H257_01803 [Aphanomyces astac... [more]
gi|673024808|ref|XP_008866365.1|9.618e-9774.19hypothetical protein H310_04027 [Aphanomyces invad... [more]
gi|960487145|ref|XP_014758272.1|2.812e-9470.59PREDICTED: ADP-ribosylation factor-like protein 2 ... [more]
gi|1070903905|gb|OEL15889.1|3.351e-9470.59ADP-ribosylation factor-like protein 2 [Dichanthel... [more]
gi|514755461|ref|XP_004963287.1|3.780e-9470.59PREDICTED: ADP-ribosylation factor-like protein 2 ... [more]
gi|1111018103|ref|XP_019260066.1|4.312e-9470.59PREDICTED: ADP-ribosylation factor-like protein 2 ... [more]
gi|1026019101|ref|XP_016543815.1|4.655e-9470.05PREDICTED: ADP-ribosylation factor-like protein 2 ... [more]
gi|1149804419|ref|XP_020162182.1|5.252e-9470.59ADP-ribosylation factor-like protein 2 [Aegilops t... [more]
gi|460394567|ref|XP_004242873.1|6.757e-9470.05PREDICTED: ADP-ribosylation factor-like protein 2 ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8576rna8576Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications