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Properties
| Property Name | Value |
|---|
| Product | atp-dependent rna helicase dbp4 |
| Orig transcript id | gnl|cribi|Naga_100060g22.5502.mrna |
| Orig protein id | gnl|cribi|Naga_100060g22.5502 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:308452..310297 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8573 ID=rna8573|Name=rna8573|organism=Nannochloropsis gaditana|type=mRNA|length=1970bp
ATGCCGCCCCCGCGTCAAAAAGAGAAAAACGGACCGGTTCTGGAGGAGAA
AAACAGCAGCACCGCCCGCCCGGGTCTTATTCTCCGTGGTCGTTGGAAGT
TGGGCCGTCTTCTTGGAGAGGGTGCATGCGGGCAGGTGTTTGCTGTCGAG
GACGTGACGGGGGCCCAAAATGAACAGGAATGGGTAATCAAACTAGCTCC
CCTTCCCCCACCCGCTGCCGCAGGGGTGGCCAGGAAGAAGAACAAGAAAG
ACGAGAGCCTGAAACGAAACGCGGACACCTTGTATATGGAGCAGCTGGTC
TATAAAAACTACTTGATGGGGGTCCCGCACGTGCCTGCGTTGCCCGCCCT
CCTCTCATACGGTGAAGACAAAGGCTTCCGGTTCCTCGTAATGCAACGCT
TAGGTCAAGATCTCAGTCAATTATTCGAATCTCAAGGACGTTACTTCTCT
CCTGCGACCCTTGCAGACTACGGGAAACAGATGTTGGATGGCATTCAACA
GATGCACGAACGGCAGCTCTTGTTCATCGATGTGAAGCCCGAGAACTTCA
TGCTCGGCTTGCCCGGCACGCGTGCGTCGAAGCGGGTCTTCCTCGTGGAT
TTGGGTCTGGTGGAAAAATACACCGGAAGCAACGGAGTCCATAAACCACA
GGAGGGGCAAGGTGCCGCGGGTGGGGGAGTAGGCACCCCCCTGTTTTCCA
GTCTCGCCTGCCACGAGGGAAGGCCAGCAGGGCGGCGCGATGATTTAGAG
GCGCTGGGCTGGGTCTTGCTGTACTTTGCGCGGGGAGGTGTCTTGCCCTG
GGCGAGTGCCACGAGCGACTCCGAGTGTTTGAAAATGAAACGGTCGGCAC
TGGTCAAGGACCTGAGCCGAGGAGTGGTGGGCGGAGACTTGCTGGCCCAG
TTTCTGGAAATGGCGCGAAAGACCGCCTATGAGGCGGCTCCGAAATATGC
AGCGTTCGCGGGCTTGCTGGATAAATTGGGTGGAGTGAAAGAGGCTGGTG
GGAAGGGAGGGGCTGGCAGCAGCTGTGCCGGAGTGGAGGTGCAAGTAGCG
GGAAGGAAACGGAAAGGCGAGAGGGTGGTTGAAAGGGGCGAGAGGGGGCC
AAAGAAAGGAGGTGGGGGGGAAGGCGAAAGGAAAGAAGGAAAAGTGACGG
GTTCAAGTCCAGCTACGGTCAAGATGGGGCCGCGTGCTGAACAAATTGAC
CGCGCGGGTTTGAAAAGCAGCGACAGCAACAACAGGCGCGAAAAAGGGAG
CCGCAAAATGGCCCCCGACCACAGTTTAGAGACGGACGTGGTGCATCTGA
CGGCGGGAGAGGCGCCGGGCCAAGGTCCACGCGCGAGGAGCACGACGAAT
GGGCACCACCAGTCGTTGTGGTTGGAGGGCCTGGCCGGACCACATAAGGG
CGAACGCTTCGAGTTGGGGACGCTGGAGAAGGCCATGTACCTGGGCCGAG
AACGGGGAGGAGTAGCCCTGCTAGAGGACAAGAGAGTGGGGGGGAAACAC
GTGAAGCTGGAGGCCTCTGGGAGAAATTCCGTCCACTCGGTAAAGGTGAC
ACCGATGACGGGAGCGGGGCTGGACCCGGTCTTGTGCAATAATGTGGCAA
TGGGCAAAAAGGGACGGGTGTTGTTCGCGGGCGACCTCCTCCAGGTCGGG
GAGAGTACGCTGGCGTTGCGGCGGGCGTAGGCATACAGGGGAGAGAGAAG
GAAAATACCTGTACCGGGTGGTGGAGGATGGTGTCGATATGAAGGACTTA
GTATCGGCTCATTATCATCTCTACGTGCATCTGGAGGCTTTCAAGTCACG
AAGATGATGACTCCGAGAACTGCAGTGCAGAAAAGAAAGTCCGCCGTAAT
GGCACGGCCTCTTGGATGTGTGTGAAGCTGTAGGATACAACATCGTCACT
CGTAAGGAACTATAGGTTCATATTTTTTCATTTTGTCCGGGGAAAGAACT
AAATCAAAGGACAAACCGAT back to topprotein sequence of rna8573 >rna8573-protein ID=rna8573-protein|Name=rna8573|organism=Nannochloropsis gaditana|type=polypeptide|length=493bp
MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSA
MTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDG
LGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPR
MNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAIL
AYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDR
LVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQ
PGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWV
VQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVP
ISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKD
VFDISALDVEAFADALGLSKCPSTKFLKALKEGRGGRRKGGRR back to topmRNA from alignment at KK037249.1:308452..310297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8573 ID=rna8573|Name=rna8573|organism=Nannochloropsis gaditana|type=mRNA|length=1846bp|location=Sequence derived from alignment at KK037249.1:308452..310297+ (Nannochloropsis gaditana)
AGCATTATAGAAATGGGGGCGTTGCCACTCGGCAGGATTATCaacgagag
gggaagggtggtggaAGACAGCAAGGGCAAAACAGAACGGgcgcaggaaa
aagagcatCGATATctgcggcggcggaagaaaaACGGCAGGGCTTGCGCG
TGCAAGAAATGGAATTGCTTCGAAAACGGGTGGTAGCAGAAGCTCCTGCA
CCAGGTACACACACTCCCAACGGCCTGCGCCAAGATACTTTCCCATGATG
ACCTTTTCTCCAATGTGCGACGCATTTTCAACTGTAAAACTATCTCTCAA
CCCGCTTCTCTGCTTTTACTGTGCATTCTCTATCTAGGCACCCAGCTTTT
tgtggagggtggtgggCCGGGAAAGGCCTTTcgcgacctccccctctcga
gAATAACCCTACAAGGGTTAGATCGAAACAAGTTTTCTGCCATGACCGAC
ATTCAACTGGCCGCAGTGCCTCATGCCTTGGCAGGACGCGATGTCCTAGG
TGCCGCCAAAACTGGTTCGGGGAAAACGCTCGCGTTCGTGGTGCCGCTCC
TCGAAAAATTATACcgggagggatgggcccTCTCAGACGGCTTGGGAGCC
TTGATCATCACACCCACGCGGGAGCTGGCGTTGCAAATATTTGAGGTCTT
GCGGACTGTGGGGAAAGGGCACATGTTCTCGGCGGCCCTGTtgacgggag
ggaaaaaagaattcCGGGAGGAACAAGCCAGGGTCCCGCGGATGAACATC
ATCGTCGCTACCCCCGGCAGGCTCTTGCAGCATTTGGAAGAAACGCCGGG
TTTTGACGCCTCCCAACTGCAAGTTTtggtcctggacgaggcggaccGGA
TCTTGGACATGGGCTTCAGCCGGCAGTTGAACGCGATCCTGGCCTACCTG
CCTCCCGGGGCGGGGCGTCAGACCTTACTGTTCTCGGCGACGCAGACCAA
GTCTGTCAAGGACCTGGCCCGACTTTCGCTGGACAAGAATTCGGAGTACG
TGGGCGTGCACGACACGGCCGCCCACGCCACCCCGGACCGGCTGGTGCAG
AACTACCTGGTGGCGGCGTTGGCGGACAAGATGGACACACTCTGGGCGTT
CATCAAGAGCCACATGAAGCACAAACTCGTCGtgtttttctcctcctgct
cccaggTCCGCTACGTGCACGCCTGCTTTCGGGCCCTCCAACCGggcgtg
cccctcctcgccctgcacGGGAAGATCAAACAGGCGCGGCGCACGCATAT
TTATTTCGAATTTGTCCGGCGGCCCGCCGCGGTGCTCTTTGCCACCGACA
TTGCGGCCCGGGGCCTGGATTTTCCCGCCTGTGACTGGGTGGTTCAGGTG
GATGCCCCAGAGGACACGGCCATGTACATCCATCGGGTGGGCCGGACGGC
ACGCTACCGAAGCGGaggccgctccctcctcttccttttgcccagcgaag
aaggaggcatgcTGCGCCGGTTGGAAGCCGCGCATGTGCCCATCTCACGG
GTGACGGTGAACCCGAGCAAGACCACCAGCGTCCGGCAAAAGACAGCGGC
GGTGGTCGCCTCCAACCCGGAGTGCAAGCGCTTAGCCCAGAAGGCCTTCG
TGTCCTACCTCCGGTCCGTGGCACTCATGCCGCTCAAGGACGTCTTCGAC
ATCTCGgcgctggacgtggaggccttcgccGATGCCCTGGGTTTGTCCAA
GTGCCCATCCACCAAATTTCTCAAGgcgctgaaggagggcaggggggggc
ggaggaagggagggaggcggtgagggagaagaagaaccGATGTCGGGCTT
TGGAACGCCTGAAAGAGAAGATCAAGATGGAgcgggcggagaaagc back to topCoding sequence (CDS) from alignment at KK037249.1:308452..310297+ >rna8573 ID=rna8573|Name=rna8573|organism=Nannochloropsis gaditana|type=CDS|length=2964bp|location=Sequence derived from alignment at KK037249.1:308452..310297+ (Nannochloropsis gaditana)
ATGGAATTGCTTCGAAAACGGGTGGTAGCAGAAGCTCCTGCACCAGGCAC
CCAGCTTTTtgtggagggtggtgggCCGGGAAAGGCCTTTcgcgacctcc
ccctctcgagAATAACCCTACAAGGGTTAGATCGAAACAAGTTTTCTGCC
ATGACCGACATTCAACTGGCCGCAGTGCCTCATGCCTTGGCAGGACGCGA
TGTCCTAGGTGCCGCCAAAACTGGTTCGGGGAAAACGCTCGCGTTCGTGG
TGCCGCTCCTCGAAAAATTATACcgggagggatgggcccTCTCAGACGGC
TTGGGAGCCTTGATCATCACACCCACGCGGGAGCTGGCGTTGCAAATATT
TGAGGTCTTGCGGACTGTGGGGAAAGGGCACATGTTCTCGGCGGCCCTGT
tgacgggagggaaaaaagaattcCGGGAGGAACAAGCCAGGGTCCCGCGG
ATGAACATCATCGTCGCTACCCCCGGCAGGCTCTTGCAGCATTTGGAAGA
AACGCCGGGTTTTGACGCCTCCCAACTGCAAGTTTtggtcctggacgagg
cggaccGGATCTTGGACATGGGCTTCAGCCGGCAGTTGAACGCGATCCTG
GCCTACCTGCCTCCCGGGGCGGGGCGTCAGACCTTACTGTTCTCGGCGAC
GCAGACCAAGTCTGTCAAGGACCTGGCCCGACTTTCGCTGGACAAGAATT
CGGAGTACGTGGGCGTGCACGACACGGCCGCCCACGCCACCCCGGACCGG
CTGGTGCAGAACTACCTGGTGGCGGCGTTGGCGGACAAGATGGACACACT
CTGGGCGTTCATCAAGAGCCACATGAAGCACAAACTCGTCGtgtttttct
cctcctgctcccaggTCCGCTACGTGCACGCCTGCTTTCGGGCCCTCCAA
CCGggcgtgcccctcctcgccctgcacGGGAAGATCAAACAGGCGCGGCG
CACGCATATTTATTTCGAATTTGTCCGGCGGCCCGCCGCGGTGCTCTTTG
CCACCGACATTGCGGCCCGGGGCCTGGATTTTCCCGCCTGTGACTGGGTG
GTTCAGGTGGATGCCCCAGAGGACACGGCCATGTACATCCATCGGGTGGG
CCGGACGGCACGCTACCGAAGCGGaggccgctccctcctcttccttttgc
ccagcgaagaaggaggcatgcTGCGCCGGTTGGAAGCCGCGCATGTGCCC
ATCTCACGGGTGACGGTGAACCCGAGCAAGACCACCAGCGTCCGGCAAAA
GACAGCGGCGGTGGTCGCCTCCAACCCGGAGTGCAAGCGCTTAGCCCAGA
AGGCCTTCGTGTCCTACCTCCGGTCCGTGGCACTCATGCCGCTCAAGGAC
GTCTTCGACATCTCGgcgctggacgtggaggccttcgccGATGCCCTGGG
TTTGTCCAAGTGCCCATCCACCAAATTTCTCAAGgcgctgaaggagggca
ggggggggcggaggaagggagggaggcggtgaATGGAATTGCTTCGAAAA
CGGGTGGTAGCAGAAGCTCCTGCACCAGGCACCCAGCTTTTtgtggaggg
tggtgggCCGGGAAAGGCCTTTcgcgacctccccctctcgagAATAACCC
TACAAGGGTTAGATCGAAACAAGTTTTCTGCCATGACCGACATTCAACTG
GCCGCAGTGCCTCATGCCTTGGCAGGACGCGATGTCCTAGGTGCCGCCAA
AACTGGTTCGGGGAAAACGCTCGCGTTCGTGGTGCCGCTCCTCGAAAAAT
TATACcgggagggatgggcccTCTCAGACGGCTTGGGAGCCTTGATCATC
ACACCCACGCGGGAGCTGGCGTTGCAAATATTTGAGGTCTTGCGGACTGT
GGGGAAAGGGCACATGTTCTCGGCGGCCCTGTtgacgggagggaaaaaag
aattcCGGGAGGAACAAGCCAGGGTCCCGCGGATGAACATCATCGTCGCT
ACCCCCGGCAGGCTCTTGCAGCATTTGGAAGAAACGCCGGGTTTTGACGC
CTCCCAACTGCAAGTTTtggtcctggacgaggcggaccGGATCTTGGACA
TGGGCTTCAGCCGGCAGTTGAACGCGATCCTGGCCTACCTGCCTCCCGGG
GCGGGGCGTCAGACCTTACTGTTCTCGGCGACGCAGACCAAGTCTGTCAA
GGACCTGGCCCGACTTTCGCTGGACAAGAATTCGGAGTACGTGGGCGTGC
ACGACACGGCCGCCCACGCCACCCCGGACCGGCTGGTGCAGAACTACCTG
GTGGCGGCGTTGGCGGACAAGATGGACACACTCTGGGCGTTCATCAAGAG
CCACATGAAGCACAAACTCGTCGtgtttttctcctcctgctcccaggTCC
GCTACGTGCACGCCTGCTTTCGGGCCCTCCAACCGggcgtgcccctcctc
gccctgcacGGGAAGATCAAACAGGCGCGGCGCACGCATATTTATTTCGA
ATTTGTCCGGCGGCCCGCCGCGGTGCTCTTTGCCACCGACATTGCGGCCC
GGGGCCTGGATTTTCCCGCCTGTGACTGGGTGGTTCAGGTGGATGCCCCA
GAGGACACGGCCATGTACATCCATCGGGTGGGCCGGACGGCACGCTACCG
AAGCGGaggccgctccctcctcttccttttgcccagcgaagaaggaggca
tgcTGCGCCGGTTGGAAGCCGCGCATGTGCCCATCTCACGGGTGACGGTG
AACCCGAGCAAGACCACCAGCGTCCGGCAAAAGACAGCGGCGGTGGTCGC
CTCCAACCCGGAGTGCAAGCGCTTAGCCCAGAAGGCCTTCGTGTCCTACC
TCCGGTCCGTGGCACTCATGCCGCTCAAGGACGTCTTCGACATCTCGgcg
ctggacgtggaggccttcgccGATGCCCTGGGTTTGTCCAAGTGCCCATC
CACCAAATTTCTCAAGgcgctgaaggagggcaggggggggcggaggaagg
gagggaggcggtga back to top
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