EWM22134.1, cds8546 (CDS) Nannochloropsis gaditana

Overview
NameEWM22134.1
Unique Namecds8546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:308610..308655 +
Alignment locationKK037249.1:308789..310224 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22134.1
Productatp-dependent rna helicase dbp4
Orig transcript idgnl|cribi|Naga_100060g22.5502.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:308610..308655 +
KK037249.1supercontigKK037249.1:308789..310224 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR025313DUF4217
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|585102554|gb|EWM22134.1| (atp-dependent rna helicase dbp4 [Nannochloropsis gaditana])

HSP 1 Score: 1000.73 bits (2586), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALKEGRGGRRKGGRR 493
            MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALKEGRGGRRKGGRR
Sbjct:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALKEGRGGRRKGGRR 493          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|299115740|emb|CBN74305.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 308/474 (64.98%), Postives = 365/474 (77.00%), Query Frame = 0
Query:    4 LRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDK-NSEYVGVHDTAAH-ATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTT---SVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCP 472
            L  +VVA APA GTQ F E  G  + F  LPLS+ T +GL    F  MT+IQ+AA+PHALAGRDVLGAAKTGSGKTLAF+VPL+EKLYR      DGL AL+I+PTREL+LQIFEVLR  GK H  SA L+TGGKKEFREEQA V +MNI+VATPGRLLQHLE+TPGFD S LQVLVLDEADRILDMGF  QLN+IL YLPP   RQT+LFSATQTKS+KDLARLSL K N EYV V       ATP +LVQNY+V  L  K+D L  FIK+H+K K++VFF+SC+QVR+      ALQPG+P++ALHGK K ARRT IY +FVRRP AVL ATDIAARGLDFP+ DWV+QVDAPED   YIHRVGRTARY SGGR+LL +LPSEE G+L  L+  ++PI R+T+NP K     SV +K +A+VAS+P+ KRLA+K+F SY+R+V LMP K  F +S L +E +A +LGL+  P
Sbjct:   24 LEAQVVATAPARGTQPFTESTGDRQPFTALPLSQRTTRGLTGGGFKTMTEIQVAAIPHALAGRDVLGAAKTGSGKTLAFLVPLVEKLYRSRITFGDGLAALVISPTRELSLQIFEVLREFGKHHQLSAGLITGGKKEFREEQASVIKMNILVATPGRLLQHLEQTPGFDPSLLQVLVLDEADRILDMGFRDQLNSILEYLPP--SRQTMLFSATQTKSIKDLARLSLRKGNVEYVAVRAGKDECATPAKLVQNYVVCRLDKKLDVLLGFIKTHLKSKMIVFFTSCAQVRFAFELLCALQPGMPVMALHGKCKHARRTQIYLDFVRRPGAVLLATDIAARGLDFPSVDWVIQVDAPEDAEGYIHRVGRTARYNSGGRALLMMLPSEEEGVLAGLKPNNIPIKRLTINPEKVRMAGSVGKKASALVASDPDKKRLAEKSFTSYVRAVQLMPNKQAFRLSELPLEEYAFSLGLAAAP 495          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|695426863|ref|XP_009529527.1| (hypothetical protein PHYSODRAFT_509429 [Phytophthora sojae] >gi|348675960|gb|EGZ15778.1| hypothetical protein PHYSODRAFT_509429 [Phytophthora sojae])

HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 296/481 (61.54%), Postives = 369/481 (76.72%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G   +F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+I+PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN+++ TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED+A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVAS+ E K LAQKAF+SY+RSV L P ++VFD +AL ++A+A++LGL   P   FL  +K
Sbjct:   42 IERLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQIRLIRMNLLICTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLSQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDSANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVASDKEIKSLAQKAFMSYVRSVYLQPDREVFDATALPLDAYAESLGLPGAPRMPFLSKMK 515          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|675185173|ref|XP_008901471.1| (hypothetical protein PPTG_08278 [Phytophthora parasitica INRA-310] >gi|568098724|gb|ETN13451.1| hypothetical protein PPTG_08278 [Phytophthora parasitica INRA-310] >gi|970663890|gb|KUG00952.1| ATP-dependent RNA helicase dbp4 [Phytophthora nicotianae])

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 297/481 (61.75%), Postives = 367/481 (76.30%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G   +F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+I+PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|566029751|gb|ETI52662.1| (hypothetical protein F443_04276 [Phytophthora parasitica P1569])

HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 297/481 (61.75%), Postives = 366/481 (76.09%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G    F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+I+PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAANFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|570333356|gb|ETO81304.1| (hypothetical protein F444_04332 [Phytophthora parasitica P1976])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 296/481 (61.54%), Postives = 367/481 (76.30%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G   +F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+++PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|567967357|gb|ETK92536.1| (hypothetical protein L915_04132 [Phytophthora parasitica] >gi|567995814|gb|ETL45943.1| hypothetical protein L916_04087 [Phytophthora parasitica] >gi|570957389|gb|ETP22368.1| hypothetical protein F441_04223 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 296/481 (61.54%), Postives = 367/481 (76.30%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G   +F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+++PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|568055522|gb|ETM52267.1| (hypothetical protein L914_04099 [Phytophthora parasitica])

HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 296/481 (61.54%), Postives = 366/481 (76.09%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G    F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+++PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAANFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|568025097|gb|ETL99117.1| (hypothetical protein L917_03988 [Phytophthora parasitica])

HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 295/481 (61.33%), Postives = 367/481 (76.30%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALK 481
            +E L  R+  + PA G+QL     G   +F   PLS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+++PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL +  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVR+VH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A +IHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++AFA++LGL   P   FL  +K
Sbjct:   41 IEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSL-REPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANHIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMK 514          
BLAST of EWM22134.1 vs. NCBI_GenBank
Match: gi|1214713593|gb|OWZ24480.1| (ATP-dependent RNA helicase [Phytophthora megakarya])

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 299/491 (60.90%), Postives = 367/491 (74.75%), Query Frame = 0
Query:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALKEGRGGRRKGG 491
            +E L  R+  + PA G+QL         +F    LS  + +GL    F+A T IQ+ A+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  W++ DGLGAL+I+PTRELALQIFEVLR VGK H FSA L+ GGK  FREEQ R+ RMN++V TPGRLLQH+E+TP FDAS LQVLVLDEADRILD+GF +QL +IL +LPP   RQT+LFSATQTKSVKDLA LSL K  EYV VH+ +A+ATP  L Q+Y+V  L  K+D L +FIKSH+K K +VF S+C QVRYVH+ F  LQPG+PL ALHGK KQ +R  +Y+EF+ +PAAVLFATDIAARGLDFP  DWV+Q+D PED A YIHRVGRTARY   G++L+ L+PSE  GM++RLE A VPI    +NP+KTTS RQK A+VVA + E K LAQKAF+SY+RSV L P ++VFD +AL ++ FA+A+GL   P   FL  +K       KGG
Sbjct:   38 IERLEARIAEQTPARGSQL-----SEAASFDLFALSEASRRGLRACGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGGKN-FREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLASILEHLPPAGERQTMLFSATQTKSVKDLAALSL-KEPEYVAVHEHSANATPKGLTQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRYVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEEAKVPIRETKLNPTKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDEFAEAMGLPGAPRMPFLSKMK---AEHEKGG 518          
The following BLAST results are available for this feature:
BLAST of EWM22134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102554|gb|EWM22134.1|0.000e+0100.00atp-dependent rna helicase dbp4 [Nannochloropsis g... [more]
gi|299115740|emb|CBN74305.1|0.000e+064.98DEAD box helicase [Ectocarpus siliculosus][more]
gi|695426863|ref|XP_009529527.1|0.000e+061.54hypothetical protein PHYSODRAFT_509429 [Phytophtho... [more]
gi|675185173|ref|XP_008901471.1|0.000e+061.75hypothetical protein PPTG_08278 [Phytophthora para... [more]
gi|566029751|gb|ETI52662.1|0.000e+061.75hypothetical protein F443_04276 [Phytophthora para... [more]
gi|570333356|gb|ETO81304.1|0.000e+061.54hypothetical protein F444_04332 [Phytophthora para... [more]
gi|567967357|gb|ETK92536.1|0.000e+061.54hypothetical protein L915_04132 [Phytophthora para... [more]
gi|568055522|gb|ETM52267.1|0.000e+061.54hypothetical protein L914_04099 [Phytophthora para... [more]
gi|568025097|gb|ETL99117.1|0.000e+061.33hypothetical protein L917_03988 [Phytophthora para... [more]
gi|1214713593|gb|OWZ24480.1|0.000e+060.90ATP-dependent RNA helicase [Phytophthora megakarya... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8573rna8573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications