rna8567, rna8567 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8567
Unique Name	rna8567
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3665
Alignment location	KK037249.1:290290..292133 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100060g28.5495.mrna
Orig protein id	gnl\|cribi\|Naga_100060g28.5495
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:290290..292133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100060g28	gene8303	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8567	rna8567-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22127.1	cds8540	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:290290..292133+
coding sequence from alignment at KK037249.1:290290..292133+

mRNA sequence

>rna8567 ID=rna8567|Name=rna8567|organism=Nannochloropsis gaditana|type=mRNA|length=3665bp
AGGACACGTCGATGCGAACGCGCAAAAGTGTAAGACGCAAAGCACTTCAC
TGTTCTATCCGTCGACATTGAAACCAACTGAAGAAACGTGCATGTGGCAA
ACATTGTGCGTACGGATGGCAATCTTGGGTGCCCAATGGCTCTGGGTATG
TCAACTTTCGTCTTCGCTTGATGCTCGCCCTCCGCTCTAGTTGCGTGCTT
CTTCAGCTTCAGTCCCCACTCCCACGCCCGCATATCTCCTCAACCAGGCA
TTTTCCAGTTCACAAATGTGGAACTACTCAGTCATTTTCTATGTGACACT
GTGTGTCGTCATGTTCGTAAAGTTCGACCTCCACCCTGCCACTGCCGGAT
AGAAAGACGGAAACCAAGGAGACTAAGTCTCGTTGAACACCACACTTGCA
CCGGGCAACATTCCTCCTTTGACCGTACACCTTATCCTCGCAGGGTCCCT
TAAAACCAATAGAGCCTAGGGTGGAAGCGGCCTCCTAGAAATCCAGTCTC
GCATGCTGGGAAGCTCTGTCGGCGCGCGGAGACTGCTCCAAGTCCGGCCA
TCCCCTGCCATTACACCCGGGTGGTCATCCGCGTCTGCGTCTATATTACA
TCGACCGAAGCTTACTTTGGCTTCGAACCTGTCTCAGCTTCTATACCCTG
CCAGTTTCTGCACGTCGCCATCAATTTTGCGTCAGAAACAGGCCTGGGTA
GCTTTTGCCCCCGACCTCGGGCCTCTGCCCCGTGCACGGAGACGGCGTGC
GCCACCGACACCCATCATGGAACGTTACTGCCGCCCGTTCTCATCATCAT
CCTCTCCATCCGCCTCCTGCTCCTCCTCCGTTAGCTCCATACCGGAGGGA
AGTGCCGGCGCGCCTTCCCCTCCACCGTCCCCGGGGGGTCCCACTGCCAA
GCAGCCTTCGTCCCGCACCAGTCACCCGGGCCACACCTCCCACGCCCACA
GCCGCCGCGTTGGCAACAATCGTACACTCAATGCTGCACATTGCTGGGAA
AAGGATGTTACCTCCACCAGCACCGCTGCCGCCTTCTCTTCCTCCCCGCT
CCCCGCGGACCCCCCTGCCGCACCCCCTGCTCACCCGCCCTCCCAAGCTG
ACGACAACGTCCCCCCTCACAGATTCCGGCTCGACCCAAGCTTTGTCCAG
CAATGGGAAGACGAGGATCCTCCTTTCGGGTTCAACGGTCTGGGCGAATT
GGTGTACCGCCGGACCTATTCCCGGATGAAGGCGGACGGGGAGCATCGGG
AGAGATGGTTTGAAACGGTGGGAAGGGTCGTGAACGGGACCTTTAGCATG
CAAAAAGAATGGCTGTTGCGGCAAAGCTTGGAGTGGGACGAAGAGCGCGC
CCAAGGACTTGCCCAAGAAATGTACCGGCGCATCTTCGAGATGAAATTTT
TGCCTCCCGGCCGGGGCCTGTGGGCGATGGGCACGACCCTGACGGAGGAC
CGCCGCTTGTACGCCGCGTTGAACAACTGCGGCTTTGTCTCCACCCAAGA
CATGGCCAACGATCCTTCCGCGCCTTTCGCCTTCCTGATGGACGCCTCGA
TGCTGGGCGTGGGTGTAGGATTCGACACTTTGGGGGCGGGCCGGGTCACG
GTTTGGGGCCCCAACCGGCGTCCAGAGGCCCGCAAGACCTTCGTCATCCC
CGATTCCCGGGAAGGCTGGGTGGAGAGTGTCAAGTACTTAATCGACGCCT
ATTTTTTGAACCTGCCGTTGCCGGCCTTCGATTATTCCTCGATCCGCCCG
GCGGGGTCGCCCATCAAGGGGTTCGGGGGCGTGAGCCAGGGCGGGGAGAT
CCTGGAGGCCTTGCACGGGGACATCCAGGGGGTCCTGGACCCGATCGTGG
GGGAGCCGGTGAGCGTCACGGCCATTGTCGACATGATGAACCTGATTGGG
AAATGCGTGGTGGCGGGGAATGTCCGGCGCACGGCGGAGATTGCCTTCGG
GGCCCCGGAGGACGAGGAGTATGTGGACCTGAAGAACTACGAGAAGAACC
CCCACCGAGCGGCGTACGGGTGGACGAGTAACAACAGCGTCTTTGCGAGC
GTGGGCATGGACTACGAAAACGTGTGCGAACGCGTGCAACGGAACGGGGA
GCCTGGCTTTGCTTGGTTGGAGAACATGCGGGCCTATGGGCGGATGGGGA
GTCCTCCGGACTGGAGGGATGCTCGGGCGATGGGGGGCAACCCCTGCTTG
GAACAGACGCTAGAATCCTTCGAGCTCTGCTGCCTGGTGGAAACCTTCCC
GGACAAGCACGACAGCCTGGAGGACTTCCTGGCCACTTTGCAGTTCGCCT
TCCTGTACGCAAAGACCGTTACCCTGGGCCCCACCCACTGGGCCAAGACC
AACGCCGTCATGCTCCGGAACCGGCGGATCGGCTGCTCCATGTCCGGCCT
GGCCCAGTTCGTGACGAGGAAGGGGATGGGGGAGCTGCACCGGTGGTGTG
AGGAAGGATACCAGACCCTACAAGAGGCCGACCAGCGGTACAGTGAATGG
CTCTCCATCCCCCGCTCCGTCAAAACCACGAGCATCAAGCCGTCGGGGAC
CGTATCCCTCCTTGCCGGCGCCACGCCCGGCATGCACTTCCCCGAATCCA
GATTCTACCTTCGCCGCGTCCGGCTGGCCAAAAACAGCGAGCTCCTACCT
CCCTTGCTGGAGGTGGGCTACGTGGTGGAGCCGGCGGCGGGCGACCCCGA
GAGGACGTGCGTGGTGGAGATTCCGGTGGATGTAGGGGAGGGAGTTCGGA
CCCTGAAGGAGGTGGGCCTTTGGGAACAGGTCGCATTCGCGGCTTTTCTC
CAACGGCATTGGGCGGACAACCAGGTGAGCTGCACAGTCACCTTCGACCC
CGCCACGGAAGGCAAAGACTTGGCCCGCGCCTTGGATGTCTTCCAATACC
AGCTCAAAGGCATCAGTTTCCTGCCCAAAATGGAGGCGGGGGCTTACCCG
CAAATGCCCTACGAAGAGATCAGCGAGGAGGAGTACCGGGAAAGGACCGA
GAGGCTGCGCGGGCGGCGGCCGGATTTCTGGCGGGGTGGCGCGGCGGTTG
AGGACAAGAAGGAGGAGCTCTTGGACAAGTTCTGTGAGAGCTGTTCCACC
AATGTGGAGGACCGGAACGAGGAGAAGTGAAGGAGGGGAGGGAAGGAGGA
AGAGGGGCAGGGAGGGAGGGAAGGAAGGAAGGGGAGAAGGGAGGGAGAGA
GGAAAAGGGATGTACATGGTCGGAGGACGTGAGTGGACAAGGAATGGAAG
AGCAGAGACTAGCTTTTGGAGGTCAATGGGTGGTAGAGACTGTCCAAGCC
GCGACAGAAGACACGCTCGCGCGTCTATCTATCGGGGAGATAGAGGAGAG
AAGGAATGAAGGACAAGCTACAAATATCCGGGATAGGAGGACAGGAGGCT
AGGGGAGAGTCGACTTACATCGAAAAACGGAAGCGGGACCTAGCTTGTCT
TGAATCCAAAGTACTGTCCCTCCCTCCCGCCCGACCGCCAGTCCCCCGCC
CTCTATCTGTGCATCTTCCGCTCGGCTTTCTTTTCAATACTAAACTTTAA
GCATGGGGTGACTCTGAAAAAAAGAATGCATTTGCGACAGCAAAAACGGC
CAAAGTCGGATTCTGTGGGCGGATGGAAAATGCGAGTCGCCACGTACTTT
GTCAGGGACTCTTCA

protein sequence of rna8567

>rna8567-protein ID=rna8567-protein|Name=rna8567|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MHHRGAIRWHFLIYFLLLRTRSFVALLFFSLTSFWSGSAVIAFQSVSSRW
PCLFFVRLNSYHGYSWQPRIPVVPLSPLFSSSSTSSSPPPVMTFKPPSLT
EITVTPDLYDAVRIYAMSDLHVDYRKNLELFQYWCSRPASGNSLSSLALE
QEKSDRIYSILLIPGDIASNPANFKAVLAATRRRFHATFIVAGNHDLWVS
NSLADQGVVTSIDKLAWIHQVAEGNGDEPEGEEDTEDGVGGKEEEGGWSE
EGKEGGPGVPGRRGESEGDWSGTPEPSANPGGSRAAHLPISPSSSSSRRG
KVFTGPVRFHTPRGERLLILPLLSWYHASWDTEPDLPAEVVADLYEGRPT
FEQRWADFRCCKWPEEVLQDREDFVSLQTEKQELAVWFARQNEIFLADTR
VRGEGPPAEKTTVISFSHFLPREELCPEKRFLLEPMLPKVIGSTPLRKQV
EALRPDLHVFGHTHIPIDLTVQGIRYLQWPLGSVGEQSRQTYEMGRRGPV
LVFDEERGGLVGTIPTRWGAHYREAARNVLETELAPWVKKYWERK

mRNA from alignment at KK037249.1:290290..292133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8567 ID=rna8567|Name=rna8567|organism=Nannochloropsis gaditana|type=mRNA|length=1844bp|location=Sequence derived from alignment at KK037249.1:290290..292133+ (Nannochloropsis gaditana)
CATCCCCGGTGCCTTCATACGTGAACAgacaggaggaagtagaggcCTAC
GGCCTGGGAGAAGTTTTCCACTTGTCGTCTGGATGCACCATCGTGGGGCG
ATACGCTGGCATTTCCTCAtttacttcctcctccttcggacGAGGTCTTT
TGTCGCGCTCTTATTCTTCTCTCTCACGAGCTTTTGGTCGGGTAGCGCGG
TCATAGCCTTTCAGTCAGTGTCATCACGGTGGCCGTGTCTTTTTTTCGTT
CGTCTGAATTCGTACCACGGCTATTCTTGGCAGCCCCGGATACCCGTAGt
acccctctcccccctcttctcctcctcatctacctcttcttcacctccgc
ccGTCATGACCTTCAAGCCACCATCCCTCACCGAAATTACTGTAACCCCC
GATCTTTATGACGCCGTGCGCATTTATGCCATGTCGGACCTGCACGTGGA
CTATCGGAAGAATCTCGAGCTCTTTCAATATTGGTGTAGTCGTCCGGCCT
CCGGAAATAGCTTATCATCCCTTGCCCTAGAGCAGGAAAAAAGCGATCGG
ATATATTCCATCCTTCTTATTCCAGGTACTGTGGATATGAATATATGAGA
GACAAGGGAAGAATAAGATCGTAAGGAtagcgggaggaagcgtggGTGCT
CAGACGGCCCAAAACgggttccctccttcccccccatcctgcAGGCGACA
TCGCATCCAACCCAGCGAATTTCAAAGCCGTCTTGGCGGCCACTCGACGT
CGATTTCATGCCACATTTATCGTCGCGGGCAACCACGACCTGTGGGTGAG
CAACTCCTTGGCCGATCAGGGCGTGGTCACCTCCATCGACAAGCTCGCCT
GGATCCACCAGGTCGCGGAGGGGAACGGGGACGAGccagaaggggaggaa
gatacagaggatggggtgggggggaaggaggaggaggggggatggagcga
ggaagggaaggagggaggccccggggtgcctggaaggaggggcgagtcCG
AGGGAGATTGGAGCGGGACACCTGAACCGTCGGCGAATCCTGGCGGTTCT
CGTGCCGCCCACCTTCCAATTTCtccgtcctcatcgtcgTCGCGACGGGG
CAAAGTCTTCACAGGGCCCGTGCGGTTTCATACCCCCCGTGGAGAGCGCC
TCCtgatcctccccctcctctcatgGTACCACGCGTCTTGGGACACTGAA
CCCGACCTCCCCGCCGAGGTCGTTGCCGATTTGTACGAAGGCCGACCCAC
CTTCGAGCAACGTTGGGCGGATTTCCGGTGTTGCAAGTGGCCGGAGGAGG
TGCTTCAAGACCGGGAAGACTTCGTGTCCCTGCAGACGGAGAAGCAGGAA
TTGGCGGTCTGGTTCGCGCGTCAAAACGAGATTTTTTTGGCCGATACGCG
GGTGCGAGGGGAAGGTCCCCCGGCGGAGAAAACGACAGTGATCTCCTTCT
CGCATTTTCTGCCGCGAGAGGAGCTCTGCCCCGAAAAACGCTTCCTCTTG
GAGCCCATGTTGCCCAAGGTGATTGGATCGACCCCCCTGCGAAAACAGGT
AGAGGCGTTGCGGCCAGATCTGCATGTGTTTGGGCACACCCACATCCCCA
TTGACTTGACGGTGCAAGGGATTCGATATTTACAATGGCCATTGGGGTCG
GTGGGAGAACAAAGTCGGCAGACTTACGAAATGGGCCGCAGAGGGCCGGT
GCTCGTGTTCgatgaggaaagggggggctTGGTCGGGACGATACCCACCC
GGTGGGGCGCGCACTACCGAGAAGCGGCTCGGAACGTGCTGGAAACGGAG
TTGGCGCCTTGGGTGAAGAAGTACTGGGAGCGAAAGTgaggggt

Coding sequence (CDS) from alignment at KK037249.1:290290..292133+

>rna8567 ID=rna8567|Name=rna8567|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at KK037249.1:290290..292133+ (Nannochloropsis gaditana)
ATGCACCATCGTGGGGCGATACGCTGGCATTTCCTCAtttacttcctcct
ccttcggacGAGGTCTTTTGTCGCGCTCTTATTCTTCTCTCTCACGAGCT
TTTGGTCGGGTAGCGCGGTCATAGCCTTTCAGTCAGTGTCATCACGGTGG
CCGTGTCTTTTTTTCGTTCGTCTGAATTCGTACCACGGCTATTCTTGGCA
GCCCCGGATACCCGTAGtacccctctcccccctcttctcctcctcatcta
cctcttcttcacctccgcccGTCATGACCTTCAAGCCACCATCCCTCACC
GAAATTACTGTAACCCCCGATCTTTATGACGCCGTGCGCATTTATGCCAT
GTCGGACCTGCACGTGGACTATCGGAAGAATCTCGAGCTCTTTCAATATT
GGTGTAGTCGTCCGGCCTCCGGAAATAGCTTATCATCCCTTGCCCTAGAG
CAGGAAAAAAGCGATCGGATATATTCCATCCTTCTTATTCCAGGCGACAT
CGCATCCAACCCAGCGAATTTCAAAGCCGTCTTGGCGGCCACTCGACGTC
GATTTCATGCCACATTTATCGTCGCGGGCAACCACGACCTGTGGGTGAGC
AACTCCTTGGCCGATCAGGGCGTGGTCACCTCCATCGACAAGCTCGCCTG
GATCCACCAGGTCGCGGAGGGGAACGGGGACGAGccagaaggggaggaag
atacagaggatggggtgggggggaaggaggaggaggggggatggagcgag
gaagggaaggagggaggccccggggtgcctggaaggaggggcgagtcCGA
GGGAGATTGGAGCGGGACACCTGAACCGTCGGCGAATCCTGGCGGTTCTC
GTGCCGCCCACCTTCCAATTTCtccgtcctcatcgtcgTCGCGACGGGGC
AAAGTCTTCACAGGGCCCGTGCGGTTTCATACCCCCCGTGGAGAGCGCCT
CCtgatcctccccctcctctcatgGTACCACGCGTCTTGGGACACTGAAC
CCGACCTCCCCGCCGAGGTCGTTGCCGATTTGTACGAAGGCCGACCCACC
TTCGAGCAACGTTGGGCGGATTTCCGGTGTTGCAAGTGGCCGGAGGAGGT
GCTTCAAGACCGGGAAGACTTCGTGTCCCTGCAGACGGAGAAGCAGGAAT
TGGCGGTCTGGTTCGCGCGTCAAAACGAGATTTTTTTGGCCGATACGCGG
GTGCGAGGGGAAGGTCCCCCGGCGGAGAAAACGACAGTGATCTCCTTCTC
GCATTTTCTGCCGCGAGAGGAGCTCTGCCCCGAAAAACGCTTCCTCTTGG
AGCCCATGTTGCCCAAGGTGATTGGATCGACCCCCCTGCGAAAACAGGTA
GAGGCGTTGCGGCCAGATCTGCATGTGTTTGGGCACACCCACATCCCCAT
TGACTTGACGGTGCAAGGGATTCGATATTTACAATGGCCATTGGGGTCGG
TGGGAGAACAAAGTCGGCAGACTTACGAAATGGGCCGCAGAGGGCCGGTG
CTCGTGTTCgatgaggaaagggggggctTGGTCGGGACGATACCCACCCG
GTGGGGCGCGCACTACCGAGAAGCGGCTCGGAACGTGCTGGAAACGGAGT
TGGCGCCTTGGGTGAAGAAGTACTGGGAGCGAAAGTgaATGCACCATCGT
GGGGCGATACGCTGGCATTTCCTCAtttacttcctcctccttcggacGAG
GTCTTTTGTCGCGCTCTTATTCTTCTCTCTCACGAGCTTTTGGTCGGGTA
GCGCGGTCATAGCCTTTCAGTCAGTGTCATCACGGTGGCCGTGTCTTTTT
TTCGTTCGTCTGAATTCGTACCACGGCTATTCTTGGCAGCCCCGGATACC
CGTAGtacccctctcccccctcttctcctcctcatctacctcttcttcac
ctccgcccGTCATGACCTTCAAGCCACCATCCCTCACCGAAATTACTGTA
ACCCCCGATCTTTATGACGCCGTGCGCATTTATGCCATGTCGGACCTGCA
CGTGGACTATCGGAAGAATCTCGAGCTCTTTCAATATTGGTGTAGTCGTC
CGGCCTCCGGAAATAGCTTATCATCCCTTGCCCTAGAGCAGGAAAAAAGC
GATCGGATATATTCCATCCTTCTTATTCCAGGCGACATCGCATCCAACCC
AGCGAATTTCAAAGCCGTCTTGGCGGCCACTCGACGTCGATTTCATGCCA
CATTTATCGTCGCGGGCAACCACGACCTGTGGGTGAGCAACTCCTTGGCC
GATCAGGGCGTGGTCACCTCCATCGACAAGCTCGCCTGGATCCACCAGGT
CGCGGAGGGGAACGGGGACGAGccagaaggggaggaagatacagaggatg
gggtgggggggaaggaggaggaggggggatggagcgaggaagggaaggag
ggaggccccggggtgcctggaaggaggggcgagtcCGAGGGAGATTGGAG
CGGGACACCTGAACCGTCGGCGAATCCTGGCGGTTCTCGTGCCGCCCACC
TTCCAATTTCtccgtcctcatcgtcgTCGCGACGGGGCAAAGTCTTCACA
GGGCCCGTGCGGTTTCATACCCCCCGTGGAGAGCGCCTCCtgatcctccc
cctcctctcatgGTACCACGCGTCTTGGGACACTGAACCCGACCTCCCCG
CCGAGGTCGTTGCCGATTTGTACGAAGGCCGACCCACCTTCGAGCAACGT
TGGGCGGATTTCCGGTGTTGCAAGTGGCCGGAGGAGGTGCTTCAAGACCG
GGAAGACTTCGTGTCCCTGCAGACGGAGAAGCAGGAATTGGCGGTCTGGT
TCGCGCGTCAAAACGAGATTTTTTTGGCCGATACGCGGGTGCGAGGGGAA
GGTCCCCCGGCGGAGAAAACGACAGTGATCTCCTTCTCGCATTTTCTGCC
GCGAGAGGAGCTCTGCCCCGAAAAACGCTTCCTCTTGGAGCCCATGTTGC
CCAAGGTGATTGGATCGACCCCCCTGCGAAAACAGGTAGAGGCGTTGCGG
CCAGATCTGCATGTGTTTGGGCACACCCACATCCCCATTGACTTGACGGT
GCAAGGGATTCGATATTTACAATGGCCATTGGGGTCGGTGGGAGAACAAA
GTCGGCAGACTTACGAAATGGGCCGCAGAGGGCCGGTGCTCGTGTTCgat
gaggaaagggggggctTGGTCGGGACGATACCCACCCGGTGGGGCGCGCA
CTACCGAGAAGCGGCTCGGAACGTGCTGGAAACGGAGTTGGCGCCTTGGG
TGAAGAAGTACTGGGAGCGAAAGTga

Synonyms

Publications