rna8563, rna8563 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8563
Unique Name	rna8563
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	804
Alignment location	KK037249.1:276680..278453 +

Link to JBrowse

Properties


Property Name	Value
Product	er lumen protein retaining receptor
Orig transcript id	gnl\|cribi\|Naga_100064g1.4102.mrna
Orig protein id	gnl\|cribi\|Naga_100064g1.4102
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:276680..278453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g1	gene8299	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8563	rna8563-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22145.1	cds8536	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:276680..278453+
coding sequence from alignment at KK037249.1:276680..278453+

mRNA sequence

>rna8563 ID=rna8563|Name=rna8563|organism=Nannochloropsis gaditana|type=mRNA|length=804bp
ATGGAGAGGAAGGATGGAGACGAGCCTTTGCCATCGCATCTTCAGCATGT
AGACATGAATAGCGAGGGCTCGGGGACCTCTGATTCAGGGGACGTTCCGC
GTGGCCCTGATGGAAGCAGTATACTCCTTGTTGATTCAAGACATCCATTG
GATGCGCCGGGACGATCCATCCCACTGATGCCGGTCCTGTTGCCTTCCTC
TACCGGCAAGGACAATCATGATAATGCGACCTCCCTCAGCGGTGCAACAC
GTCCCAATGAGGCCTCCCACCCCGCATTCCCTTCCTCCGTACCTTTTCTC
ACCACTGAGGAGCTGCGTACGACCTTGGAAAACTTCTACCGGGCTCACAA
CCCCAAGAATGCAGACAAAATCGACGCTTTTTTGAAGCGCTACCAAGGTC
GGGAGCCCCAGCTGTTGCTTGACGTTCAAGCGAAATACAAGGACGGAGGG
GTACATATCACGGATTATATGCCGAATACTGTTGACGTAGAGGCATGTGT
GAGTGTTCTTGAGGAAAAGAATTCGAGGGCGGACACATCAGCCGTCTGCA
ACCGCAGGGAAAGCACTGCGTTGTCTTCCTTTTTTGCGCCTGGGGATTCG
AAACCCGCCGTGAAAGCGAAAGGCGACAATCACAGCGCTAGCAGCAGCGT
TGACGTCGGGGTTCTGCCTGCCTTGCTGCTCAAGGCATTCAAAAAGAAGG
ATTCGACCCATTCCCAGCCACAGCCCCTGTGGGCGCGGCAGGAGCGACCC
CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCGACCCTATGTCGCGC
CTGA

protein sequence of rna8563

>rna8563-protein ID=rna8563-protein|Name=rna8563|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRY
LDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRLE
FALIPCLVLAMITSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVV
ENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYA
DFFYYYFQSKYYGGTFSLPTSSAGFK

mRNA from alignment at KK037249.1:276680..278453+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8563 ID=rna8563|Name=rna8563|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at KK037249.1:276680..278453+ (Nannochloropsis gaditana)
ccctatGTTCCTACATACCCAAGCAATGCGCTTGCGCACGGCCACGTCTG
GCCGGGATGAATTGTGAATTTAATGAAAAGTATGGGCGGACTGACCATTA
CTAGGGCGGTTTTTAGTCGCGTGCTTCCGAGTTCGCACTTTTTAGTCCCC
AGACGAATCAGGCTCACACGAAACATCCTTCCCGTCCACACACAATGAAA
CTCATTCGAATGACACACATTCCTCTTTGCACCATAAATACGTCAAGGTG
CAGGCCAATACCGCATCACAATCAGCTTCTCCTGTAGCTCCAGATTTGGC
CGTCCCCGAGGTTCCTTCATACCAACACAAGGAAGTCGCTGAAGGAGCTT
CTTACCAGGGTCGACCCCACCCTTTGCGCGTTCAGCATTAGTTGGCTACA
TTCACCATGTCGATGAACATATTTCGATTTGCCGGGGACATGTCCCACGT
CTTTTCTATCattatcctcctcctacGTTTGCATGTGGCGAAGAACGCGA
ATGGTGTGTCTTTGAAGACCCAGGAGCTCTTCCTCATCGTGTTTTGCACG
CGGTACCTGGATTTATTGATACGCTTTATATCGCTGTACAACTCGGCGAT
GAAGATTTTGTACATTGGCTCCACGGCTGGTGAGTGGGGATGTCAGTGCA
CACGGCAatgagggagacgggagaaggcagggggtaGTGCCTGACTTGGC
ACATACATTTGCATGTATGTATGTGTTATGCACGACTTCTGACGAGGCGG
ACGGAATGAATACGTCAATGATACGCTTTCTCattcgtccttcccctttc
agCCATCATCCACATGATTCGATACCGAGAGCCCTACCGGAGCACGTATG
ACAGGAGTCAAGATTCCTTCCGGTTGGAGTTCGCCTTGATCCCATGCTTG
GTCCTCGCCATGATCACGAGCCTGATCCGGGGCTTCGGCTTCATTGAGGt
gaggggcaaggaaggggaacggaaggagaaggaagaaggaaacagGTGTC
AGGACCCTGGTCTCGTTCCCCACTGGAGCTTTCACTCCCGCCGCtcaccc
ttctccctgcctctgccgccccccccctttcagTTGTTCTGGACCTTCAG
CATCTATTTGGAAGCCGTGGCCATCCTGCCGCAGCTCATTGTCCTGCAAC
GGTACAGCGTAGTGGAGAATCTGACGGGGCATTATATCTTCTTCTTGGGC
GCCTACCGGGGGCTATACATTTTGAACTGGGTGGGTGGTTgatagggaag
gagggagggagggagggaggaaggggcatgTGCgggttttttggggggga
cGAGGTAGGGCGGGGGGCTTTGTGCCCGGTCCCGTGTCGTCTCGTCTCCC
GACGGCCTTGACTTAATCCTGTTGATCCCACTCTCCCCCAGATCTATCGC
GCCTACACAGAAAAGCACTACCACCACGACTACGTGGTGTATGCCTGCGG
GTTTGTGCAAACGGCGCTCTATGCCGACTTTTTTTACTACTATTTCCAGA
GCAAGTACTACGGAGGCACGTTCTCCTTGCCGACGTCCTCCGCCGGATTC
AAATAGGCATGCATgcctgggcgtggaggggaggggatcggGGTGAAGGA
AGCTGTGGGGGCACACGCGCGGGGCAAGGGACCGGGCACGTCCTGGGAGT
ATGGCGGAGGATGTAGCTATAGGGAAACAGGGGCTGTGTCGCTCTGGGGG
GGATCCTGGCGGATCGGACGCGTTCTCTGAAGGACTTGCCAGACGCGGag
acggggtggggaggacgcaAGGAG

Coding sequence (CDS) from alignment at KK037249.1:276680..278453+

>rna8563 ID=rna8563|Name=rna8563|organism=Nannochloropsis gaditana|type=CDS|length=2724bp|location=Sequence derived from alignment at KK037249.1:276680..278453+ (Nannochloropsis gaditana)
ATGTCGATGAACATATTTCGATTTGCCGGGGACATGTCCCACGTCTTTTC
TATCattatcctcctcctacGTTTGCATGTGGCGAAGAACGCGAATGGTG
TGTCTTTGAAGACCCAGGAGCTCTTCCTCATCGTGTTTTGCACGCGGTAC
CTGGATTTATTGATACGCTTTATATCGCTGTACAACTCGGCGATGAAGAT
TTTGTACATTGGCTCCACGGCTGCCATCATCCACATGATTCGATACCGAG
AGCCCTACCGGAGCACGTATGACAGGAGTCAAGATTCCTTCCGGTTGGAG
TTCGCCTTGATCCCATGCTTGGTCCTCGCCATGATCACGAGCCTGATCCG
GGGCTTCGGCTTCATTGAGTTGTTCTGGACCTTCAGCATCTATTTGGAAG
CCGTGGCCATCCTGCCGCAGCTCATTGTCCTGCAACGGTACAGCGTAGTG
GAGAATCTGACGGGGCATTATATCTTCTTCTTGGGCGCCTACCGGGGGCT
ATACATTTTGAACTGGATCTATCGCGCCTACACAGAAAAGCACTACCACC
ACGACTACGTGGTGTATGCCTGCGGGTTTGTGCAAACGGCGCTCTATGCC
GACTTTTTTTACTACTATTTCCAGAGCAAGTACTACGGAGGCACGTTCTC
CTTGCCGACGTCCTCCGCCGGATTCAAATAGATGTCGATGAACATATTTC
GATTTGCCGGGGACATGTCCCACGTCTTTTCTATCattatcctcctccta
cGTTTGCATGTGGCGAAGAACGCGAATGGTGTGTCTTTGAAGACCCAGGA
GCTCTTCCTCATCGTGTTTTGCACGCGGTACCTGGATTTATTGATACGCT
TTATATCGCTGTACAACTCGGCGATGAAGATTTTGTACATTGGCTCCACG
GCTGCCATCATCCACATGATTCGATACCGAGAGCCCTACCGGAGCACGTA
TGACAGGAGTCAAGATTCCTTCCGGTTGGAGTTCGCCTTGATCCCATGCT
TGGTCCTCGCCATGATCACGAGCCTGATCCGGGGCTTCGGCTTCATTGAG
TTGTTCTGGACCTTCAGCATCTATTTGGAAGCCGTGGCCATCCTGCCGCA
GCTCATTGTCCTGCAACGGTACAGCGTAGTGGAGAATCTGACGGGGCATT
ATATCTTCTTCTTGGGCGCCTACCGGGGGCTATACATTTTGAACTGGATC
TATCGCGCCTACACAGAAAAGCACTACCACCACGACTACGTGGTGTATGC
CTGCGGGTTTGTGCAAACGGCGCTCTATGCCGACTTTTTTTACTACTATT
TCCAGAGCAAGTACTACGGAGGCACGTTCTCCTTGCCGACGTCCTCCGCC
GGATTCAAATAGATGTCGATGAACATATTTCGATTTGCCGGGGACATGTC
CCACGTCTTTTCTATCattatcctcctcctacGTTTGCATGTGGCGAAGA
ACGCGAATGGTGTGTCTTTGAAGACCCAGGAGCTCTTCCTCATCGTGTTT
TGCACGCGGTACCTGGATTTATTGATACGCTTTATATCGCTGTACAACTC
GGCGATGAAGATTTTGTACATTGGCTCCACGGCTGCCATCATCCACATGA
TTCGATACCGAGAGCCCTACCGGAGCACGTATGACAGGAGTCAAGATTCC
TTCCGGTTGGAGTTCGCCTTGATCCCATGCTTGGTCCTCGCCATGATCAC
GAGCCTGATCCGGGGCTTCGGCTTCATTGAGTTGTTCTGGACCTTCAGCA
TCTATTTGGAAGCCGTGGCCATCCTGCCGCAGCTCATTGTCCTGCAACGG
TACAGCGTAGTGGAGAATCTGACGGGGCATTATATCTTCTTCTTGGGCGC
CTACCGGGGGCTATACATTTTGAACTGGATCTATCGCGCCTACACAGAAA
AGCACTACCACCACGACTACGTGGTGTATGCCTGCGGGTTTGTGCAAACG
GCGCTCTATGCCGACTTTTTTTACTACTATTTCCAGAGCAAGTACTACGG
AGGCACGTTCTCCTTGCCGACGTCCTCCGCCGGATTCAAATAGATGTCGA
TGAACATATTTCGATTTGCCGGGGACATGTCCCACGTCTTTTCTATCatt
atcctcctcctacGTTTGCATGTGGCGAAGAACGCGAATGGTGTGTCTTT
GAAGACCCAGGAGCTCTTCCTCATCGTGTTTTGCACGCGGTACCTGGATT
TATTGATACGCTTTATATCGCTGTACAACTCGGCGATGAAGATTTTGTAC
ATTGGCTCCACGGCTGCCATCATCCACATGATTCGATACCGAGAGCCCTA
CCGGAGCACGTATGACAGGAGTCAAGATTCCTTCCGGTTGGAGTTCGCCT
TGATCCCATGCTTGGTCCTCGCCATGATCACGAGCCTGATCCGGGGCTTC
GGCTTCATTGAGTTGTTCTGGACCTTCAGCATCTATTTGGAAGCCGTGGC
CATCCTGCCGCAGCTCATTGTCCTGCAACGGTACAGCGTAGTGGAGAATC
TGACGGGGCATTATATCTTCTTCTTGGGCGCCTACCGGGGGCTATACATT
TTGAACTGGATCTATCGCGCCTACACAGAAAAGCACTACCACCACGACTA
CGTGGTGTATGCCTGCGGGTTTGTGCAAACGGCGCTCTATGCCGACTTTT
TTTACTACTATTTCCAGAGCAAGTACTACGGAGGCACGTTCTCCTTGCCG
ACGTCCTCCGCCGGATTCAAATAG

Synonyms

Publications