EWM22145.1, cds8536 (CDS) Nannochloropsis gaditana

Overview
NameEWM22145.1
Unique Namecds8536
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:277086..277308 +
Alignment locationKK037249.1:277482..277627 +
Alignment locationKK037249.1:277763..277909 +
Alignment locationKK037249.1:278071..278235 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22145.1
Producter lumen protein retaining receptor
Orig transcript idgnl|cribi|Naga_100064g1.4102.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:277086..277308 +
KK037249.1supercontigKK037249.1:277482..277627 +
KK037249.1supercontigKK037249.1:277763..277909 +
KK037249.1supercontigKK037249.1:278071..278235 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006621protein retention in ER lumen
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046923ER retention sequence binding
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000133ER_ret_rcpt
Homology
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|585102566|gb|EWM22145.1| (er lumen protein retaining receptor [Nannochloropsis gaditana])

HSP 1 Score: 460.299 bits (1183), Expect = 7.586e-164
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRLEFALIPCLVLAMITSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSAGFK 226
            MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRLEFALIPCLVLAMITSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSAGFK
Sbjct:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRLEFALIPCLVLAMITSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSAGFK 226          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|219122751|ref|XP_002181703.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406979|gb|EEC46917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 317.39 bits (812), Expect = 2.153e-107
Identity = 154/227 (67.84%), Postives = 184/227 (81.06%), Query Frame = 0
Query:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSF-RLEFALIPCLVLAMITSLI--RGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSAG 224
            MSMNIFR AGDM HVFSII+LLLRL VAKNA G+SL+T ELFL+VF TRYLDL   F S+YNS MK+LYI STA+I++ IR++EP +STY++SQD+F   +FA+ PC  +A+IT LI  + F  +EL WTFSIYLE++AILPQLIVLQRY  VENLTG+YIFF+GAYR LYI+NWIYRA+TEK Y H +VVY CG VQT LYADFFYYY +SK  GG F+LPT S  
Sbjct:    1 MSMNIFRLAGDMCHVFSIIVLLLRLRVAKNAQGISLRTNELFLLVFVTRYLDLFFNFFSIYNSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALITHLIGSKRFDMVELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEKGYKHHWVVYFCGVVQTLLYADFFYYYLKSKSKGGKFTLPTKSTN 227          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|1072236259|gb|OEU20987.1| (KDEL receptor A [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 307.375 bits (786), Expect = 2.269e-103
Identity = 149/226 (65.93%), Postives = 181/226 (80.09%), Query Frame = 0
Query:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSF-RLEFALIPCLVLAMITSLI----RGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSA 223
            MNIFRF GDMSH+FSII+LLLRL VAKNA G+S+KT EL+L+VF TRYLDL   F S YNS MK++YI +TA+I++ I+++EP +STY++ QDSF   +FA IPC VLA IT LI      F F+EL WTFSIYLE + I+PQL+VLQRY  VENLTG+Y+FF+GAYR LYILNWIYRA TEK+Y H +VVY CG +QT LYADFFYYY +SK  GG FSLPTS++
Sbjct:    1 MNIFRFCGDMSHLFSIIVLLLRLRVAKNAQGISVKTHELYLLVFLTRYLDLFTTFYSAYNSVMKLVYIAATASIVYTIKFQEPIKSTYEKGQDSFLHWQFAAIPCAVLAFITHLIGSGIADFNFMELLWTFSIYLECLTIMPQLVVLQRYREVENLTGNYVFFMGAYRALYILNWIYRANTEKNYRHHWVVYICGTIQTLLYADFFYYYLKSKAKGGKFSLPTSAS 226          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|1210514553|dbj|GAX26510.1| (ER lumen protein retaining receptor [Fistulifera solaris])

HSP 1 Score: 302.368 bits (773), Expect = 2.331e-101
Identity = 160/228 (70.18%), Postives = 183/228 (80.26%), Query Frame = 0
Query:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFR-LEFALIPCLVLAMITSLI----RGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSA 223
            MSMNIFR AGDMSHVFSI++LLLRL VAKNA G+S++T ELFLIVF TRYLDL   F SLYNS MKILYI STA+II+ I+++EP +STYD+SQDSF   +FA+ PC VLA +T LI     GF FIEL WTFSIYLE++AILPQLIVLQRY  VENLTG+YIFF+GAYR LYILNWIYRA  E HY H +VVY CG +QT LY DFFYYYF+SK  GG F+LPT   
Sbjct:    1 MSMNIFRLAGDMSHVFSILVLLLRLRVAKNAQGISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVTHLIGSGISGFSFIELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDFFYYYFKSKKSGGRFTLPTKGT 228          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|1210513626|dbj|GAX27498.1| (ER lumen protein retaining receptor [Fistulifera solaris])

HSP 1 Score: 301.982 bits (772), Expect = 2.601e-101
Identity = 160/228 (70.18%), Postives = 183/228 (80.26%), Query Frame = 0
Query:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFR-LEFALIPCLVLA----MITSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSSA 223
            MSMNIFR AGDMSHVFSI++LLLRL VAKNA G+S++T ELFLIVF TRYLDL   F SLYNS MKILYI STA+II+ I+++EP +STYD+SQDSF   +FA+ PC VLA    +I S I GF FIEL WTFSIYLE++AILPQLIVLQRY  VENLTG+YIFF+GAYR LYILNWIYRA  E HY H +VVY CG +QT LY DFFYYYF+SK  GG F+LPT   
Sbjct:    1 MSMNIFRLAGDMSHVFSILVLLLRLRVAKNAQGISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIASTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASATHLIGSGISGFSFIELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDFFYYYFKSKKSGGRFTLPTKGT 228          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|676397749|ref|XP_009042152.1| (hypothetical protein AURANDRAFT_55650 [Aureococcus anophagefferens] >gi|323447211|gb|EGB03147.1| hypothetical protein AURANDRAFT_55650 [Aureococcus anophagefferens])

HSP 1 Score: 301.597 bits (771), Expect = 2.995e-101
Identity = 147/220 (66.82%), Postives = 180/220 (81.82%), Query Frame = 0
Query:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSF-RLEFALIPCLVLAMITSLI-RGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPT 220
            MN+FRFAGDMSHV SII+L+LRL V+K+A G+S+KTQELFLIVF TRYLDL   F S+YNS MK+ YI +TA+II+MIR++EPY+S YD+SQDSF  ++FA+ PC VLA+ + LI R    I+L WTFSI+LEA+AI+PQL VLQRY  VENLTGHY+FFLGAYR LYILNW+YR+Y E  Y H+++VY  G +QTALY DFFYYY  SKYYGG  +LPT
Sbjct:    1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISIKTQELFLIVFVTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHVKFAVAPCAVLALFSCLIKRELNPIDLLWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYVSGAIQTALYVDFFYYYMVSKYYGGKLTLPT 220          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|224001002|ref|XP_002290173.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973595|gb|EED91925.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 300.442 bits (768), Expect = 1.284e-100
Identity = 152/227 (66.96%), Postives = 174/227 (76.65%), Query Frame = 0
Query:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFR-LEFALIPCLVLAMITSLIRGFGFI------ELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSS 222
            MNIFR  GDMSHVFSII+LLLRL VA+NA G+SL+T ELFL+VF TRY DL   + SLYNS MK+LYI STA+I++ IR +EP  STYD++QD+FR  EFA+ PC VLA +T LI G G        EL WTFSIYLEAVAILPQLIVLQRY  VENLTG+YIFF+G YR LYI+NW++RAY E  Y H YVVY CG +QT LYADFFYYY  SK  GG FSLPT  
Sbjct:    1 MNIFRLCGDMSHVFSIIVLLLRLRVARNAQGISLRTHELFLLVFLTRYTDLFTTYYSLYNSVMKVLYIASTASIVYTIRLQEPICSTYDKAQDTFRHWEFAVAPCAVLATLTHLISGGGLFSVVDVQELLWTFSIYLEAVAILPQLIVLQRYRDVENLTGNYIFFMGLYRALYIVNWVFRAYNEPGYRHHYVVYFCGVLQTLLYADFFYYYVMSKRRGGKFSLPTKG 227          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|676393683|ref|XP_009040119.1| (hypothetical protein AURANDRAFT_54782 [Aureococcus anophagefferens] >gi|323449329|gb|EGB05218.1| hypothetical protein AURANDRAFT_54782 [Aureococcus anophagefferens])

HSP 1 Score: 298.516 bits (763), Expect = 5.215e-100
Identity = 145/220 (65.91%), Postives = 179/220 (81.36%), Query Frame = 0
Query:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSF-RLEFALIPCLVLAMITSLI-RGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPT 220
            MN+FRFAGDMSHV SII+L+LRL V+K+A G+SLKTQELFLIVF TRYLDL   F S+YNS MK+ YI +TA+II+MIR++EPY+S YD+SQDSF   +FA+ PC +LA+ + LI R    +++ WTFSI+LEA+AI+PQL VLQRY  VENLTGHY+FFLGAYR LYILNW+YR+Y E  Y H+++VY  G +QTALY DFFYYY  SKYYGG  +LPT
Sbjct:    1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISLKTQELFLIVFMTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHFKFAVAPCAMLALFSCLIKRELNPVDVLWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYISGAIQTALYVDFFYYYIVSKYYGGKLTLPT 220          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|397569620|gb|EJK46859.1| (hypothetical protein THAOC_34459 [Thalassiosira oceanica])

HSP 1 Score: 294.664 bits (753), Expect = 2.665e-98
Identity = 151/231 (65.37%), Postives = 177/231 (76.62%), Query Frame = 0
Query:    1 MSMNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFR-LEFALIPCLVLAMITSLIRGFG-----FI---ELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPTSS 222
            MSMN+FR  GDMSHVFSI++LLLRL VAKNA+G+SL+T ELFL+VF TRY DL   + SLYNS MKI YI STA+I++MIR  +P  +TYD++QD+FR   FA+ PC VLA +T  I G G     F+   EL WTFSIYLE++AILPQLI+LQRY  VENLTG+YIFF+G+YR LYILNWIYR Y E  Y H YV Y CG +QT LYADFFYYY QSK  GG FSLPT S
Sbjct:    1 MSMNVFRLCGDMSHVFSIVVLLLRLRVAKNASGISLRTHELFLLVFLTRYTDLFTTYYSLYNSCMKIAYILSTASIVYMIRLSDPICTTYDKAQDTFRHWAFAVGPCAVLATLTHFISGEGSGYSLFVNIQELLWTFSIYLESIAILPQLILLQRYREVENLTGNYIFFMGSYRALYILNWIYRTYYEPGYRHHYVAYFCGVLQTLLYADFFYYYMQSKRRGGRFSLPTKS 231          
BLAST of EWM22145.1 vs. NCBI_GenBank
Match: gi|299471879|emb|CBN77049.1| (PGPS/D6 [Ectocarpus siliculosus])

HSP 1 Score: 264.618 bits (675), Expect = 1.565e-86
Identity = 136/226 (60.18%), Postives = 162/226 (71.68%), Query Frame = 0
Query:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSF-RLEFALIPCLVLAMI-------TSLIRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADFFYYYFQSKYYGGTFSLPT 220
            MNIFR AGDMSH  SI++LLL+L  +K+A G+SLKTQELFL+VF TRY+DL  RFIS YNS MK+LYI  T+ II+MIR   P ++TYD+SQDSF   +FA+ PC  L ++       T  +     I  FWTFS  LE  AI+PQL+VLQRY  VENLTGHY+F LGAYR LYI+NW+YRA+ E  Y H  +VY  G VQT LYADFFYYY  SKYYGG  SLP 
Sbjct:    1 MNIFRLAGDMSHTASILMLLLKLRASKSAAGISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPFSSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADFFYYYAISKYYGGRMSLPA 226          
The following BLAST results are available for this feature:
BLAST of EWM22145.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102566|gb|EWM22145.1|7.586e-164100.00er lumen protein retaining receptor [Nannochlorops... [more]
gi|219122751|ref|XP_002181703.1|2.153e-10767.84predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072236259|gb|OEU20987.1|2.269e-10365.93KDEL receptor A [Fragilariopsis cylindrus CCMP1102... [more]
gi|1210514553|dbj|GAX26510.1|2.331e-10170.18ER lumen protein retaining receptor [Fistulifera s... [more]
gi|1210513626|dbj|GAX27498.1|2.601e-10170.18ER lumen protein retaining receptor [Fistulifera s... [more]
gi|676397749|ref|XP_009042152.1|2.995e-10166.82hypothetical protein AURANDRAFT_55650 [Aureococcus... [more]
gi|224001002|ref|XP_002290173.1|1.284e-10066.96predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|676393683|ref|XP_009040119.1|5.215e-10065.91hypothetical protein AURANDRAFT_54782 [Aureococcus... [more]
gi|397569620|gb|EJK46859.1|2.665e-9865.37hypothetical protein THAOC_34459 [Thalassiosira oc... [more]
gi|299471879|emb|CBN77049.1|1.565e-8660.18PGPS/D6 [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8563rna8563Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications