rna8558, rna8558 (mRNA) Nannochloropsis gaditana

Overview
Namerna8558
Unique Namerna8558
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1290
Alignment locationKK037249.1:265575..266631 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100064g6.4098.mrna
Orig protein idgnl|cribi|Naga_100064g6.4098
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:265575..266631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100064g6gene8294Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8558rna8558-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22141.1cds8531Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8558 ID=rna8558|Name=rna8558|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGATAGCTCAGGTCATGTACTCGGGTGCCGTCGTCTATGGAGCCAAGAA
TCAATCCCGTTGTTTGGCAGCTGTTAAAGGGGATCACGAACACCATCGCT
TCTTCGTTGGGGCCGCGGGCTTACGTGACTATCCCCAAAACGAGCTTCTC
CTCCTAGAATATTCCGAAGAGACCAATAAATTAAGAGAAGCAAGTGCTTA
TTCTCATCCTGGCGAGATATGGCACATTAGTCCTTCCCCTCGAGATTCTT
CTCTATGTTTTACAAGCTCTACTCGTCGAGGCGCCGATCCCCTCTGTACC
TTGTGGCGATTATCATTACCCGAGTTCCCGCACTCTCCGCCTTCCTCTCC
TTCCAAAGATGCAGGAGATATGCCGCGGTCAACCACTCGCCATTCTCCGA
CCCAGCAAGCATTTACGACATCCTTTTTGGCAGGAGAGGGAGCGAAAAAG
GGTACCAAAGCACAACACAGGCTTATAAAAGGCAGTCGTGATCAATCTAT
GGAGCCCTTGATAACTTTACCGGTAGACAATGATCCCAACAAAAGCAGAG
GCGGAGGAGGGCGCGTACGGTGCGTGTTATGGGGCCCGGAGCAAGAAACC
AATGGTAAGGTGCTGGCAGTGGATGGGGAGAAGGCCAGACTTTACGCTCT
TCAAGGAAGCAGCGACGCCCAGGAAATGAGTAATTTCGACCTCGGCGTGG
AGGAAAAGGGGGAGGTGCAGGCCGCGGCATGGGACCCGCACGACCCTTGG
AAAGTAGCGATTGCCCAGGGTCGAGGCATTAGACACTTGGATATGCGGAT
GGAGCAAGCCACAGGGATGACGGAAACGGAGCAGAGCAGCGGTTTCTGTC
ATCGATTCGGTGTCAAAGACGTGGATTTCAACCATGCCAAGCCCTATTGC
TTCGTCACGGGGGGGGAAGACCGACTCATCAAATTTTGGGATATCCGGCG
GACAGGCCAGGGCCCCGTCAAGCGCCTGGCCGGGCACGCCCACTGGGTCT
GGACGGTCAAGTACAACCCCTGCCACGACCAGCTGCTCCTGAGTGCGGGC
ACGGACAACCTGGTGAACCTGTGGCGGATCTCCTCCATCTCCTCCGCGCC
CTTGTGGGAGCCGGAGGAGGGCCCAGAGGCCCCGGACGTGCGGGTCCTGG
CGATTCAAGACCACGAGGAGAGCGTCTACGCCGTGGACTGGTCGGCCTGC
GACCCCTTCCTTTTCGCCTCGCTGTCCTACGACGGCCGGGTCGTGGTGAA
CGCGGTGCCCCCCTCGGAGAAGTATAAGATCTTGCTCTGA
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protein sequence of rna8558

>rna8558-protein ID=rna8558-protein|Name=rna8558|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MRDGIPRPDDFSFHSKMRHAILLIDVLVLFGLRASTSAFSVVVAQHRVIS
LASFSRLNFVPGWKVTPLHYLGVKSRRYRSGSFKMRDGSMVRDFEVGDLV
RVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAELGTEGPIRVDFVA
DQGRNAGRLGVGKDKNYNFFNEAELIKLLAVHDRTA
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mRNA from alignment at KK037249.1:265575..266631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8558 ID=rna8558|Name=rna8558|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp|location=Sequence derived from alignment at KK037249.1:265575..266631- (Nannochloropsis gaditana)
CGCTGAGAAACATCGCCCACAAGGCAGTCGCCCGCTTCTTCAACGACGCC
TTCACGCGCTCGCACTGTGAAACTCCAAACTAGATGGCATACGAGTGCTT
TGAAAGTATCCTGGTGATTGCTTGACGTGTTACAGCAGATATACACCGCG
CGAGCAGAGGCACAGTAGGAGGAACGAGATTGCAAAGAAGAGGGGAGGTT
ATTTTCTGATCAATCTCTCTTCCACAGGCGTGCATTTACAGCCAAATGAG
GGACGGCATACCGAGACCGGATGATTTCTCCTTCCATTCAAAAATGAGGC
ATGCGATATTGCTGATCGACGTTTTGGTTTTGTTTGGATTAAGGGCGTCC
ACTTCCGCCTTTTCGGTCGTGGTTGCACAGCACCGAGTAATATCCCTTGC
ATCGTTTTCGAGGTTGAACTTCGTGCCCGGCTGGAAGGTCACGCCGCTGC
ATTACTTGGGTGTCAAAAGCCGGCGCTACCGAAGTGGATCTTTTAAAATG
AGGGACGGGAGCATGGTGCGTGATTTTGAGGTGGGTGACCTCGTACGCGT
CCAACCCGGCACTTTTTTAGATGGCATGGACTGGGGCGGACTGGAGGGGG
TTGTCACGACGACATGGGTCAAGTAAGTACATCTCCAGGCTTGCCTTGGT
CTATTGATACATACTTTGTCGACATTTGCCTTGTGTCTCCATCTGAACCG
TGTGTCTAATTTTGTGATGGTTTCGCTGTCTAGGATGAAGTATCTCAAAT
GCTGCAATAAAACCAACATGCGGCTCCTTTCTTCCAACCATAAGATGCGA
AGTAGATCCTCATTGTTGCTGTGCTGAGCTCGGCACCGAAGGGCCTATAC
GAGTAGATTTTGTAGCAGATCAAGGCCGGAATGCGGGAAGACTGGGAGTC
GGCAAAGATAAGAATTATAATTTTTTTAACGAAGCTGAATTGATAAAGTT
GCTAGCGGTCCATGACCGGACAGCATAATGAAAATGTGTTGTCAAAAAAA
CTTCTCTGTGAACAGCAAATAAAGGTAATCTAAAAAAAAATATGGTGTCG
TTCATTT
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Coding sequence (CDS) from alignment at KK037249.1:265575..266631-

>rna8558 ID=rna8558|Name=rna8558|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at KK037249.1:265575..266631- (Nannochloropsis gaditana)
ATGCGAAGTAGATCCTCATTGTTGCTGTGCTGAGCTCGGCACCGAAGGGC
CTATACGAGTAGATTTTGTAGCAGATCAAGGCCGGAATGCGGGAAGACTG
GGAGTCGGCAAAGATAAGAATTATAATTTTTTTAACGAAGCTGAATTGAT
AAAGTTGCTAGCGGTCCATGACCGGACAGCATAAATGAGGGACGGCATAC
CGAGACCGGATGATTTCTCCTTCCATTCAAAAATGAGGCATGCGATATTG
CTGATCGACGTTTTGGTTTTGTTTGGATTAAGGGCGTCCACTTCCGCCTT
TTCGGTCGTGGTTGCACAGCACCGAGTAATATCCCTTGCATCGTTTTCGA
GGTTGAACTTCGTGCCCGGCTGGAAGGTCACGCCGCTGCATTACTTGGGT
GTCAAAAGCCGGCGCTACCGAAGTGGATCTTTTAAAATGAGGGACGGGAG
CATGGTGCGTGATTTTGAGGTGGGTGACCTCGTACGCGTCCAACCCGGCA
CTTTTTTAGATGGCATGGACTGGGGCGGACTGGAGGGGGTTGTCACGACG
ACATGGGTCAAATGCGAAGTAGATCCTCATTGTTGCTGTGCTGAGCTCGG
CACCGAAGGGCCTATACGAGTAGATTTTGTAGCAGATCAAGGCCGGAATG
CGGGAAGACTGGGAGTCGGCAAAGATAAGAATTATAATTTTTTTAACGAA
GCTGAATTGATAAAGTTGCTAGCGGTCCATGACCGGACAGCATAAATGAG
GGACGGCATACCGAGACCGGATGATTTCTCCTTCCATTCAAAAATGAGGC
ATGCGATATTGCTGATCGACGTTTTGGTTTTGTTTGGATTAAGGGCGTCC
ACTTCCGCCTTTTCGGTCGTGGTTGCACAGCACCGAGTAATATCCCTTGC
ATCGTTTTCGAGGTTGAACTTCGTGCCCGGCTGGAAGGTCACGCCGCTGC
ATTACTTGGGTGTCAAAAGCCGGCGCTACCGAAGTGGATCTTTTAAAATG
AGGGACGGGAGCATGGTGCGTGATTTTGAGGTGGGTGACCTCGTACGCGT
CCAACCCGGCACTTTTTTAGATGGCATGGACTGGGGCGGACTGGAGGGGG
TTGTCACGACGACATGGGTCAA
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Synonyms
Publications