EWM22141.1, cds8531 (CDS) Nannochloropsis gaditana

Overview
NameEWM22141.1
Unique Namecds8531
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:266010..266386 -
Alignment locationKK037249.1:265654..265837 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22141.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100064g6.4098.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:266010..266386 -
KK037249.1supercontigKK037249.1:265654..265837 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22141.1 vs. NCBI_GenBank
Match: gi|585102562|gb|EWM22141.1| (hypothetical protein Naga_100064g6 [Nannochloropsis gaditana])

HSP 1 Score: 383.259 bits (983), Expect = 8.895e-135
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 MRDGIPRPDDFSFHSKMRHAILLIDVLVLFGLRASTSAFSVVVAQHRVISLASFSRLNFVPGWKVTPLHYLGVKSRRYRSGSFKMRDGSMVRDFEVGDLVRVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAELGTEGPIRVDFVADQGRNAGRLGVGKDKNYNFFNEAELIKLLAVHDRTA 186
            MRDGIPRPDDFSFHSKMRHAILLIDVLVLFGLRASTSAFSVVVAQHRVISLASFSRLNFVPGWKVTPLHYLGVKSRRYRSGSFKMRDGSMVRDFEVGDLVRVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAELGTEGPIRVDFVADQGRNAGRLGVGKDKNYNFFNEAELIKLLAVHDRTA
Sbjct:    1 MRDGIPRPDDFSFHSKMRHAILLIDVLVLFGLRASTSAFSVVVAQHRVISLASFSRLNFVPGWKVTPLHYLGVKSRRYRSGSFKMRDGSMVRDFEVGDLVRVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAELGTEGPIRVDFVADQGRNAGRLGVGKDKNYNFFNEAELIKLLAVHDRTA 186          
BLAST of EWM22141.1 vs. NCBI_GenBank
Match: gi|1210524468|dbj|GAX16726.1| (hypothetical protein FisN_21Hu168 [Fistulifera solaris])

HSP 1 Score: 63.5438 bits (153), Expect = 1.118e-9
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0
Query:   76 RRYRSGSFKMRDGSMVRDFEVGDLVRVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAE-LGTEGPIRVDFVADQG 153
            ++Y + S+ MRD S    F VGD V+V        M     +G+V  TW KCEVDP CCCAE +     +RVDF  + G
Sbjct:    4 KKYWASSWTMRDRSASMAFRVGDRVQVTEDLVYRDMKLKHRQGIVVETWEKCEVDPTCCCAEQVDVNMAVRVDFQQEGG 82          
BLAST of EWM22141.1 vs. NCBI_GenBank
Match: gi|219127888|ref|XP_002184158.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404389|gb|EEC44336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 61.6178 bits (148), Expect = 1.302e-8
Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 0
Query:   83 FKMRDGSMVRDFEVGDLVRVQPGTFLDGMDWGGLEGVVTTTWVKCEVDPHCCCAELGTEG-PIRVDFVADQGRNAGRLGVGKDKNYNFFNEAELIKLLA 180
            + MRD S    F+VGD V V       G+   G +G+V  TW KC+VDP CCCAE    G  +RV F   QG  A    +G    +++F E EL +  A
Sbjct:   39 WTMRDRSASYWFQVGDSVEVLDDVMKAGITLRGRQGIVQETWEKCDVDPTCCCAEQVDVGMAVRVKF---QGSEADESDIG--SFFHYFAEDELRQFFA 132          
The following BLAST results are available for this feature:
BLAST of EWM22141.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585102562|gb|EWM22141.1|8.895e-135100.00hypothetical protein Naga_100064g6 [Nannochloropsi... [more]
gi|1210524468|dbj|GAX16726.1|1.118e-941.77hypothetical protein FisN_21Hu168 [Fistulifera sol... [more]
gi|219127888|ref|XP_002184158.1|1.302e-839.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8558rna8558Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications