rna8551, rna8551 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8551
Unique Name	rna8551
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2824
Alignment location	KK037249.1:241244..244354 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100064g16.4109.mrna
Orig protein id	gnl\|cribi\|Naga_100064g16.4109
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:241244..244354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g16	gene8287	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8551	rna8551-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22152.1	cds8524	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:241244..244354+
coding sequence from alignment at KK037249.1:241244..244354+

mRNA sequence

>rna8551 ID=rna8551|Name=rna8551|organism=Nannochloropsis gaditana|type=mRNA|length=2824bp
ACTGTTCTGTTCCACTGAACGCCATCATCCCGAAGCTGGAGCGTCCTCTC
CAAGAGGAAGCACATCCTTGGCGGTGTGAAGAGGCGTGAATGGCAGTTTT
ACTTTGTGGAATGGACCTCATTGACGTCTTGAAAATTGTGGGATGGTCTC
TAATGACCTCACAGCAGCATCTAACGGGTCACGACAGCGCACGTTCAAGT
AAAAAAGGAGAACTTGCATGACTCTCAATAAATAAATGTGCGCGGGTTTG
ATCCATTCCAATGTCACAAACATGCACAGATTTACAGGAAGATCTCCTTT
ATTTGGCCATGAACGTCACGTTGGACCGGTTTCCTGATTGATGAGGTTCC
TGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTCACGGTGCTAT
CCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCGACAGTAAAAG
ATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCCCAGCGAACTA
TATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACTTTCTCATCCA
GCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTGGGGACAATGG
ACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAAGACCTGTACA
ACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAGTCGAATGCCT
TTCCCTCCCAAGGCGGAAGACTCCCTGCTTGAACGTTTGGAAAAAGCGCA
CATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTGCTTCATACAA
AATCCACCGTGACATTCCCTTCTTCCAGCTCCCGGGAGGCGCCTTCGAAG
CGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATGAACACTGGAC
ATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCGGGCATGGGCC
TGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTATCACCTGCCAC
CCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGTGCATGCCCAT
GGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTGGTGAAGAACG
ATTACCTCCTCCGCTTCTACCACCCTGTCACCAACCAACATTTGCTCCTG
GACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCGCCGCCAATCA
ACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAAAGTAGCCCAT
TCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTCTCGTGGAGGGA
GGATGGGGGGAGGGAAGGAAAGACAGGGGGAGGCCTGGGGGACCGATGCA
GGGAACGTCATGCCTGGGCGAAGGAGGGGAGGAGGTGTTGCTCCCTAGGG
AAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTTGGGTCATCTA
GCCCATGCACCCCGTGGACGGCATTCTGAGAGGGGGGCGGAAGGGCCCCA
GGACGGGCACACCCGCTCGTGGGATGCAGGGCGGTCTTGTCAGCATGACG
AGGGCGACGAGGGGGGAGGCCTGAAATGTAGGGGAGGAGAAGTAGGATTT
CTTCATTACGGACGCACGGCTATCTCTTCCCTGTAGCTCACTTGAACCTC
TGTGAGCGATCTTTCCTTAGTGCGGCATGTATGTCCATTTCCTCATCTGA
CCCGCCCTGATTCCTCTTTGTCTTGTCTTTTGGCCCACCCAGTCAATGAC
CCCCATTCCCCCGAGAAATACAACGCAGAATTCCATCTCTGCGAGCTTCC
GTCAGACCTGCCACCCCACCTGCTTCGCTTTATTCCCAACCTGCATTTCG
CCCAAGGCATTGGAAGTCGGCACTTTTGTGTCCTGGTGACGGCGTCGAAA
AATCTGGAGGTGCCCCAAGGTGCCCCCCCCGTCGAAATTTATGTTCCCTA
TGCAAGTTCATTCACGGAGGTCTGCAAGCATGGATTTCCATTGCTTTGAA
TTTACACATGCGTGGGCGTGAGAAAGAAAGACATGTATGCCTGGAGAGCT
ATGGGGGTCAAAGGAATGCGGGTCGTCTGGTGGTCAAACATCGGCCGTGG
TACTTTTCCCTGGGCGGCAGGAATTTGTCCTATGGCTGGCTGCAGATGAT
GACATTGCTTATCATGTACGGGAAATTGAAGGCATTTCCTGCCGTAGAGA
TAATTTCGTTCACGGAACTCAGGCCTTGGGCAGGTCCAGCGTGAGTGAAA
ATGAGGAGAAATTTGTTGCACGGACTAGGGATCTGCGACACGACACATCG
CCGCGTGATTTGATATGGAAAAGTGAACAGCCAATGGATGGAACGAAGGC
TTTCCTACTGCAACACTGAGCATATGCGTTTCTTTCGTGGCATCTGAGCT
GCCATTCATGTCTGTAGCCTTCGCCTTTTCCTACTCGAGACGGAAGTCTG
CTCATACTCATAAGCTTATAATTGTGTGTTGGACGCCTCATTATATACAG
AAACCGCACAAAAATGCAAAGCACACGACCTGCGCAATCTCAAGCATGAA
CCTTCTTTCCTCGCACATTTAGTTTCTTGTGTTCGACATGTGGTCCCCTC
GGCCAGTTACCCGCAGTCAACGCCTTCGCACCCCACCCTGGTAAGGAACC
TGGATCCCGAAACATTCTCCGCCCCGGGCAAGGGGGAGGACGTGGCGGAG
GAAGGAGAAGAGAAGGAGAAGAACTTGATCGCCGCATCCAATGAAAAAAG
GGAGGAGGATGCAACTGAGGCTGGGGCCCCGGATTTGCCAATGGCTTCCG
CTTCGTGAGCAACAGAGATACGGG

protein sequence of rna8551

>rna8551-protein ID=rna8551-protein|Name=rna8551|organism=Nannochloropsis gaditana|type=polypeptide|length=455bp
MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSS
QRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHK
DLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQL
LHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGA
GMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFL
VKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLE
SSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVL
LPREMDSSKYFTAKLGLGHLVNDPHSPEKYNAEFHLCELPSDLPPHLLRF
IPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKH
GFPLL

mRNA from alignment at KK037249.1:241244..244354+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8551 ID=rna8551|Name=rna8551|organism=Nannochloropsis gaditana|type=mRNA|length=3111bp|location=Sequence derived from alignment at KK037249.1:241244..244354+ (Nannochloropsis gaditana)
ACTGTTCTGTTCCACTGAACGCCATCATCCCGAAGCTGGAGCGTCCTCTC
CAAGAGGAAGCACATCCTTGGCGGTGTGAAGAGGCGTGAATGGCAGTTTT
ACTTTGTGGAATGGACCTCATTGACGTCTTGAAAATTGTGGGATGGTCTC
TAATGACCTCACAGCAGCATCTAACGGGTCACGACAGCGCACGTTCAAGT
AAAAAAGGAGAACTTGCATGACTCTCAATAAATAAATGTGCGCGGGTTTG
ATCCATTCCAATGTCACAAACATGCACAGATTTACAGGAAGATCTCCTTT
ATTTGGCCATGAACGTCACGTTGGACCGGTTTCCTGATTGATGAGGTTCC
TGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTCACGGTGCTAT
CCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCGACAGTAAAAG
ATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCCCAGCGAACTA
TATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACTTTCTCATCCA
GCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTGGGGACAATGG
ACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAAGACCTGTACA
ACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAGTCGaatgcct
ttccctcccaaggCGGAAGACTCCCTGCTTGAACGTTTGGAAAAAGCGCA
CATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTGCTTCATACAA
AATCCACCGTGacattcccttcttccagctccCGGGAGGCGCCTTCGAAG
CGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATGAACACTGGAC
ATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCGGGCATGGGCC
TGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTATCACCTGCCAC
CCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGTGCATGCCCAT
GGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTGGTGAAGAACG
AttacctcctccgcttctacCACCCTGTCACCAACCAACATTTGCTCCTG
GACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCGCCGCCAATCA
ACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAAAGTAGCCCAT
TCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTctcgtggaggga
ggatggggggagggaaggaaagacagggggaggcctgggggACCGATGCA
GGGAACGTCATGCctgggcgaaggaggggaggaggtgttgcTCCCTAGGG
AAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTTGGGTCATCTa
ggtaagggagggcgggagggagggtgagagggagggactaaAAGAGCGGG
GAATGAGTGGTCTCACTGTGGCGTGAAATGAAGAGATTATGCCGTTGTAT
TTGAGGTTGGGTGGTCGTGGTGTAGCAAGCccggcaaggggaagagagag
tcgaggagaggggggcctggagaaatgccctcttctccctcatccgcTCC
ATcgtccttgctcttcccccctttcctcgtcacGGGTGCTACTGGGCTGT
ACCTGCCGCTGCACTCGTGTCTCGTCCTTCCTACCTAGCCCATGCACCCC
GTGGACGGCATTCtgagaggggggcggaagggccCCAGGACGGGCACACC
CGCTCGTGGGATGCAGGGCGGTCTTGTCAGCATGAcgagggcgacgaggg
gggaggcctgAAAtgtaggggaggagaagtagGATTTCTTCATTACGGAC
GCACGGCTATCTCTTCCCTGTAGCTCACTTGAACCTCTGTGAGCGATCTT
TCCTTAGTGCGGCATGTATGTCCATTTCCTCATCTGACCCGCCCTGATTC
CTCTTTGTCTTGTCTTTTGGCCCACCCAGTCAATGACCCCCATTCCCCCG
AGAAATACAACGCAGAATTCCATCTCTGCGAGCTTCCGTCAGACCTGCCA
CCCCACCTGCTTCGCTTTATTCCCAACCTGCATTTCGCCCAAGGCATTGG
AAGTCGGCACTTTTGTGTCCTGGTGACGGCGTCGAAAAATCTGGAGGTGC
CCCAAGGTGCCCCCCCCGTCGAAATTTATGTTCCCTATGCAAGTTCATTC
ACGGAGGTCTGCAAGCATGGATTTCCATTGCTTTGAATTTACACATGCGT
GGGCGTGAGAAAGAAAGACATGTATGCCTGGAGAGCTATGGGGGTCAAAG
GAATGCGGGTCGTCTGGTGGTCAAACATCGGCCGTGGTACTTTTCCCTGG
GCGGCAGGAATTTGTCCTATGGCTGGCTGCAGATGATGACATTGCTTATC
ATGTACGGGAAATTGAAGGCATTTCCTGCCGTAGAGATAATTTCGTTCAC
GGAACTCAGGCCTTGGGCAGGTCCAGCGTGAGTGAAAATGAGGAGAAATT
TGTTGCACGGACTAGGGATCTGCGACACGACACATCGCCGCGTGATTTGA
TATGGAAAAGTGAACAGCCAATGGATGGAACGAAGGCTTTCCTACTGCAA
CACTGAGCATATGCGTTTCTTTCGTGGCATCTGAGCTGCCATTCATGTCT
GTAGCCTTCGCCTTTTCCTACTCGAGACGGAAGTCTGCTCATACTCATAA
GCTTATAATTGTGTGTTGGACGCCTCATTATATACAGAAACCGCACAAAA
ATGCAAAGCACACGACCTGCGCAATCTCAAGCATGAACCTTCTTTCCTCG
CACATTTAGTTTCTTGTGTTCGACATGTGGTCCCCTCGGCCAGTTACCCG
CAGTCAACGCCTTCGCACCCCACCCTGGTAAGGAACCTGGATCCCGAAAC
ATTCTCCGCcccgggcaagggggaggacgtggcggaggaaggagaagaga
aggagaagaactTGATCGCCGCATCCaatgaaaaaagggaggaggatgca
acTGAGGCTGGGGCCCCGGATTTGCCAATGGCTTCCGCTTCGTGAGCAAC
AGAGATACGGG

Coding sequence (CDS) from alignment at KK037249.1:241244..244354+

>rna8551 ID=rna8551|Name=rna8551|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at KK037249.1:241244..244354+ (Nannochloropsis gaditana)
ATGAGGTTCCTGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTC
ACGGTGCTATCCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCG
ACAGTAAAAGATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCC
CAGCGAACTATATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACT
TTCTCATCCAGCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTG
GGGACAATGGACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAA
GACCTGTACAACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAG
TCGaatgcctttccctcccaaggCGGAAGACTCCCTGCTTGAACGTTTGG
AAAAAGCGCACATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTG
CTTCATACAAAATCCACCGTGacattcccttcttccagctccCGGGAGGC
GCCTTCGAAGCGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATG
AACACTGGACATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCG
GGCATGGGCCTGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTAT
CACCTGCCACCCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGT
GCATGCCCATGGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTG
GTGAAGAACGAttacctcctccgcttctacCACCCTGTCACCAACCAACA
TTTGCTCCTGGACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCG
CCGCCAATCAACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAA
AGTAGCCCATTCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTct
cgtggagggaggatggggggagggaaggaaagacagggggaggcctgggg
gACCGATGCAGGGAACGTCATGCctgggcgaaggaggggaggaggtgttg
cTCCCTAGGGAAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTT
GGGTCATCTagTCAATGACCCCCATTCCCCCGAGAAATACAACGCAGAAT
TCCATCTCTGCGAGCTTCCGTCAGACCTGCCACCCCACCTGCTTCGCTTT
ATTCCCAACCTGCATTTCGCCCAAGGCATTGGAAGTCGGCACTTTTGTGT
CCTGGTGACGGCGTCGAAAAATCTGGAGGTGCCCCAAGGTGCCCCCCCCG
TCGAAATTTATGTTCCCTATGCAAGTTCATTCACGGAGGTCTGCAAGCAT
GGATTTCCATTGCTTTGAATGAGGTTCCTGCCTTGTCCCAGCCCCTTGGC
AAGTGTTTCTTGGCTTTCACGGTGCTATCCTCATACTATCCAGCCCGCTT
TGATTGGCAATAGCATCGACAGTAAAAGATGGACATGGAATCTCAAGGTT
TTACAATGGAAGTCATCCCAGCGAACTATATTTCAATACCTGTGGCCGCC
TAAATCCGGCCCATCACTTTCTCATCCAGCAGGAAAGACAGATAGCGGCT
CCCAAAATGATGTGGGTGGGGACAATGGACAGGACATTTCTAAATCACAA
AATCTGTATTCGCATAAAGACCTGTACAACAAGGACACATTGTGGGGCGC
GAAGACAGGCGTCGGGAGTCGaatgcctttccctcccaaggCGGAAGACT
CCCTGCTTGAACGTTTGGAAAAAGCGCACATGTGCACCGAGCGGCTCCTA
CAACGGAAGTCCCAACTGCTTCATACAAAATCCACCGTGacattcccttc
ttccagctccCGGGAGGCGCCTTCGAAGCGACTCGGCTCTTGCCCCGTGC
TTGAGGACCTACTGGATGAACACTGGACATTCCGCCTCGAACGACGGCCT
TCCACTCTACCGGGAGCGGGCATGGGCCTGTTCCTAGTCCAGGGGCGGGT
GCACGCGGGGGAAGTTATCACCTGCCACCCTGGGCTTGTCTACCGGATCC
CGTACGACCTGGAGGCGTGCATGCCCATGGATGAAGTCAGTTTCTCGCCC
TGTCCCCCGCCGTTCCTGGTGAAGAACGAttacctcctccgcttctacCA
CCCTGTCACCAACCAACATTTGCTCCTGGACGGTTGTCCTCAGGGCATCT
CGGCGTTGAATTTTATCGCCGCCAATCAACGTCGGGGCCGTCCGTGGGCG
AACATGGAGTGGCTGGAAAGTAGCCCATTCGGCTGCCGGCGCCGCGGGCC
TGAACGCGAAGAGGGTctcgtggagggaggatggggggagggaaggaaag
acagggggaggcctgggggACCGATGCAGGGAACGTCATGCctgggcgaa
ggaggggaggaggtgttgcTCCCTAGGGAAATGGACTCGAGCAAATACTT
CACGGCCAAATTGGGGTTGGGTCATCTagTCAATGACCCCCATTCCCCCG
AGAAATACAACGCAGAATTCCATCTCTGCGAGCTTCCGTCAGACCTGCCA
CCCCACCTGCTTCGCTTTATTCCCAACCTGCATTTCGCCCAAGGCATTGG
AAGTCGGCACTTTTGTGTCCTGGTGACGGCGTCGAAAAATCTGGAGGTGC
CCCAAGGTGCCCCCCCCGTCGAAATTTATGTTCCCTATGCAAGTTCATTC
ACGGAGGTCTGCAAGCATGGATTTCCATTGCTTTGA

Synonyms

Publications