EWM22152.1, cds8524 (CDS) Nannochloropsis gaditana

Overview
NameEWM22152.1
Unique Namecds8524
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:241584..242694 +
Alignment locationKK037249.1:243273..243529 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22152.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100064g16.4109.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:241584..242694 +
KK037249.1supercontigKK037249.1:243273..243529 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22152.1 vs. NCBI_GenBank
Match: gi|585102573|gb|EWM22152.1| (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0
Identity = 455/455 (100.00%), Postives = 455/455 (100.00%), Query Frame = 0
Query:    1 MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPHSPEKYNAEFHLCELPSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKHGFPLL 455
            MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPHSPEKYNAEFHLCELPSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKHGFPLL
Sbjct:    1 MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPHSPEKYNAEFHLCELPSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKHGFPLL 455          
BLAST of EWM22152.1 vs. NCBI_GenBank
Match: gi|585102572|gb|EWM22151.1| (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 764.607 bits (1973), Expect = 0.000e+0
Identity = 371/374 (99.20%), Postives = 372/374 (99.47%), Query Frame = 0
Query:    1 MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDP 374
            MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHL + P
Sbjct:    1 MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLAHAP 374          
BLAST of EWM22152.1 vs. NCBI_GenBank
Match: gi|553187395|ref|XP_005854601.1| (hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526] >gi|422294453|gb|EKU21753.1| hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.0258 bits (188), Expect = 8.226e-12
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  190 LERRPSTLPGAGMGLFLV-QGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRR 289
            L+ RPS++P AG GL+L     V  G+++T +PGL+Y +P+DL A MP  E +F+  PP F++ N +LLR    V+++  L DG P G+SA  F A ++R+
Sbjct:  117 LDVRPSSIPNAGRGLWLKPYQNVAKGDILTLYPGLIYELPHDLAALMP-SEDAFAFAPPDFMIGNAFLLRVS--VSSRDFLCDGRPFGLSAHMFRAISRRQ 214          
BLAST of EWM22152.1 vs. NCBI_GenBank
Match: gi|552845072|ref|XP_005851253.1| (hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis] >gi|307110916|gb|EFN59151.1| hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis])

HSP 1 Score: 77.7962 bits (190), Expect = 1.445e-11
Identity = 85/272 (31.25%), Postives = 121/272 (44.49%), Query Frame = 0
Query:  177 VLEDLLDEHWTFRLERRPSTL--PGAGMGLFLVQGRVHAGEVITCHPGLVYRI-PYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNF--IAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGW-GEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPHSP-EKYNAEFHLCELPSDLPPHLLRFIPNLHF-AQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPY 440
             L + L +   F L+RRPS +  P AG G+FL  G   AG ++T +PGLV+ +  + L   +   + + +P PP + + N YLL+      N   L+DG P G+SA  F   AA+   G+P                     E  LV   W   G + R    G +         G E LL            +  LGH++N  H P    NA F +C LP+ LPP L R++P+L    +G     +  LVTA   L    G+ PVE+ V Y
Sbjct:  595 ALTEALADTIGFELQRRPSGIQHPDAGDGVFLTAGGCPAGGILTLYPGLVHDMGDFVLLLGVSAPDDACAPAPPAWTLDNHYLLQLR--CLNAACLVDGQPGGLSAQRFQAAAASWAAGQP---------------------EAALVNASWLALGGQQRAELDGRL---------GCEALL-----------RQAALGHMLN--HGPAAAANAAFDMCPLPAALPPSLQRYVPSLSVGGRGEEEVRWVPLVTARTALGATAGS-PVELLVDY 820          
BLAST of EWM22152.1 vs. NCBI_GenBank
Match: gi|585105113|gb|EWM23845.1| (hypothetical protein Naga_100273g2 [Nannochloropsis gaditana])

HSP 1 Score: 72.7886 bits (177), Expect = 2.174e-10
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 0
Query:  190 LERRPSTLPGAGMGLFLV-QGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPH 375
            L+ RPS++P AG GL+L     V  G+++T +PGL+Y +P+DL A MP  E +F+  PP F++ N +LLR    V+++  L DG P G+SA  F A +                     RR  ER    V   W EG  + G+  G         EGG +              + L  GHL+NDP 
Sbjct:  140 LDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMP-SEDAFAFAPPDFMIGNAFLLRV--SVSSRDFLCDGRPFGLSAHMFRAIS---------------------RRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGK-------------RSSLAWGHLINDPQ 289          
The following BLAST results are available for this feature:
BLAST of EWM22152.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102573|gb|EWM22152.1|0.000e+0100.00hypothetical protein Naga_100064g16 [Nannochlorops... [more]
gi|585102572|gb|EWM22151.1|0.000e+099.20hypothetical protein Naga_100064g16 [Nannochlorops... [more]
gi|553187395|ref|XP_005854601.1|8.226e-1242.57hypothetical protein NGA_0209800, partial [Nannoch... [more]
gi|552845072|ref|XP_005851253.1|1.445e-1131.25hypothetical protein CHLNCDRAFT_49994 [Chlorella v... [more]
gi|585105113|gb|EWM23845.1|2.174e-1033.16hypothetical protein Naga_100273g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8551rna8551Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications