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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100064g16.4108.mrna |
| Orig protein id | gnl|cribi|Naga_100064g16.4108 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:241244..244354 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8550 ID=rna8550|Name=rna8550|organism=Nannochloropsis gaditana|type=mRNA|length=957bp
ATGCGGAAGCGCACGGCAGGCCAGCGGAGTCTGGACTACATGGTGCTGCC
TACCGCCGAGGAGCTGGTCGAGGAACTGAAAAAGAAACAGAAAGGTCCCT
CTTCTCGAGACATTTTAGGGCGGGCAATGTTCGGGGTCGCCGCATTTTTG
GTCATGATCACGATCGGGTGGCAACTTGGCAAATTGCACCGGCACAAAAA
AGGTTATTCTCCCTCCGACCTGGTGAAATCTCGCAGCGCCGCCAAGAAAG
CTGCTGCTTCCACACTTTCCCCTGAACCCTCGCGGCAAAGCATTCTGTCC
ATGGTGGAGGCAGAAGAGGAAGCACTGGCACCCGTCCCCCGGCTTTTCAC
GGCGGCGGATTTACAACGGGCGAAAGACGCCTACACGACCGCATCGCCCT
CCACCCACCCTATCCTCTTGGCGATTGTCGGCCATGTCTTTGATGTCTCC
AAGGGCGCACAGTTTTATGCCCCGCCTCCCGTGGAGGAAGCGGGAGGGGA
AGGCGGGGGGGAGGGCGGCGAAGAAGGCCTGCGGGAGGATGTAGACGGTC
TGAGCGAAGAGGAGTGCCGCGGGGTCTGGAGATGGGTGAACTTTTTCAAG
GAGAAGGAGGATTATCCCTTCGTGGGCAGGCTGGTCGGCATGTACTTTGA
TGGGGACGGAAGACCGACCCGGAATTATCTGAATTTTCGGGCCTGTGTGG
GGAGGGCTGGGCAAGGGGAGGGGGAGGAGGCGTGTGCGACCAGCTGGGAG
AAAGGGAAAGGGCACACCGTGTGGTGCGAGGGGGCGGGGAAGGTCCCCCG
GCGCCGGGTGAAGGAGGGAGGGAGGGAGGGGCAGGAGGCAAGGGGAAGGT
GCGTGTGCGTGGACCTGAAGGACGGAGAGGCGCATGCAGAGGAGGGGGAT
GGGAGCTTGGTCGTGTATCCCGGATGTGAGCCGCGAAGCTCCTTGTGCAC
GTTTTAG back to topprotein sequence of rna8550 >rna8550-protein ID=rna8550-protein|Name=rna8550|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MRFLPCPSPLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSS
QRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHK
DLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQL
LHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGA
GMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFL
VKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLE
SSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVL
LPREMDSSKYFTAKLGLGHLAHAPRGRHSERGAEGPQDGHTRSWDAGRSC
QHDEGDEGGGLKCRGGEVGFLHYGRTAISSL back to topmRNA from alignment at KK037249.1:241244..244354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8550 ID=rna8550|Name=rna8550|organism=Nannochloropsis gaditana|type=mRNA|length=3111bp|location=Sequence derived from alignment at KK037249.1:241244..244354+ (Nannochloropsis gaditana)
ACTGTTCTGTTCCACTGAACGCCATCATCCCGAAGCTGGAGCGTCCTCTC
CAAGAGGAAGCACATCCTTGGCGGTGTGAAGAGGCGTGAATGGCAGTTTT
ACTTTGTGGAATGGACCTCATTGACGTCTTGAAAATTGTGGGATGGTCTC
TAATGACCTCACAGCAGCATCTAACGGGTCACGACAGCGCACGTTCAAGT
AAAAAAGGAGAACTTGCATGACTCTCAATAAATAAATGTGCGCGGGTTTG
ATCCATTCCAATGTCACAAACATGCACAGATTTACAGGAAGATCTCCTTT
ATTTGGCCATGAACGTCACGTTGGACCGGTTTCCTGATTGATGAGGTTCC
TGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTCACGGTGCTAT
CCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCGACAGTAAAAG
ATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCCCAGCGAACTA
TATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACTTTCTCATCCA
GCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTGGGGACAATGG
ACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAAGACCTGTACA
ACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAGTCGaatgcct
ttccctcccaaggCGGAAGACTCCCTGCTTGAACGTTTGGAAAAAGCGCA
CATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTGCTTCATACAA
AATCCACCGTGacattcccttcttccagctccCGGGAGGCGCCTTCGAAG
CGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATGAACACTGGAC
ATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCGGGCATGGGCC
TGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTATCACCTGCCAC
CCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGTGCATGCCCAT
GGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTGGTGAAGAACG
AttacctcctccgcttctacCACCCTGTCACCAACCAACATTTGCTCCTG
GACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCGCCGCCAATCA
ACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAAAGTAGCCCAT
TCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTctcgtggaggga
ggatggggggagggaaggaaagacagggggaggcctgggggACCGATGCA
GGGAACGTCATGCctgggcgaaggaggggaggaggtgttgcTCCCTAGGG
AAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTTGGGTCATCTa
ggtaagggagggcgggagggagggtgagagggagggactaaAAGAGCGGG
GAATGAGTGGTCTCACTGTGGCGTGAAATGAAGAGATTATGCCGTTGTAT
TTGAGGTTGGGTGGTCGTGGTGTAGCAAGCccggcaaggggaagagagag
tcgaggagaggggggcctggagaaatgccctcttctccctcatccgcTCC
ATcgtccttgctcttcccccctttcctcgtcacGGGTGCTACTGGGCTGT
ACCTGCCGCTGCACTCGTGTCTCGTCCTTCCTACCTAGCCCATGCACCCC
GTGGACGGCATTCtgagaggggggcggaagggccCCAGGACGGGCACACC
CGCTCGTGGGATGCAGGGCGGTCTTGTCAGCATGAcgagggcgacgaggg
gggaggcctgAAAtgtaggggaggagaagtagGATTTCTTCATTACGGAC
GCACGGCTATCTCTTCCCTGTAGCTCACTTGAACCTCTGTGAGCGATCTT
TCCTTAGTGCGGCATGTATGTCCATTTCCTCATCTGACCCGCCCTGATTC
CTCTTTGTCTTGTCTTTTGGCCCACCCAGTCAATGACCCCCATTCCCCCG
AGAAATACAACGCAGAATTCCATCTCTGCGAGCTTCCGTCAGACCTGCCA
CCCCACCTGCTTCGCTTTATTCCCAACCTGCATTTCGCCCAAGGCATTGG
AAGTCGGCACTTTTGTGTCCTGGTGACGGCGTCGAAAAATCTGGAGGTGC
CCCAAGGTGCCCCCCCCGTCGAAATTTATGTTCCCTATGCAAGTTCATTC
ACGGAGGTCTGCAAGCATGGATTTCCATTGCTTTGAATTTACACATGCGT
GGGCGTGAGAAAGAAAGACATGTATGCCTGGAGAGCTATGGGGGTCAAAG
GAATGCGGGTCGTCTGGTGGTCAAACATCGGCCGTGGTACTTTTCCCTGG
GCGGCAGGAATTTGTCCTATGGCTGGCTGCAGATGATGACATTGCTTATC
ATGTACGGGAAATTGAAGGCATTTCCTGCCGTAGAGATAATTTCGTTCAC
GGAACTCAGGCCTTGGGCAGGTCCAGCGTGAGTGAAAATGAGGAGAAATT
TGTTGCACGGACTAGGGATCTGCGACACGACACATCGCCGCGTGATTTGA
TATGGAAAAGTGAACAGCCAATGGATGGAACGAAGGCTTTCCTACTGCAA
CACTGAGCATATGCGTTTCTTTCGTGGCATCTGAGCTGCCATTCATGTCT
GTAGCCTTCGCCTTTTCCTACTCGAGACGGAAGTCTGCTCATACTCATAA
GCTTATAATTGTGTGTTGGACGCCTCATTATATACAGAAACCGCACAAAA
ATGCAAAGCACACGACCTGCGCAATCTCAAGCATGAACCTTCTTTCCTCG
CACATTTAGTTTCTTGTGTTCGACATGTGGTCCCCTCGGCCAGTTACCCG
CAGTCAACGCCTTCGCACCCCACCCTGGTAAGGAACCTGGATCCCGAAAC
ATTCTCCGCcccgggcaagggggaggacgtggcggaggaaggagaagaga
aggagaagaactTGATCGCCGCATCCaatgaaaaaagggaggaggatgca
acTGAGGCTGGGGCCCCGGATTTGCCAATGGCTTCCGCTTCGTGAGCAAC
AGAGATACGGG back to topCoding sequence (CDS) from alignment at KK037249.1:241244..244354+ >rna8550 ID=rna8550|Name=rna8550|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at KK037249.1:241244..244354+ (Nannochloropsis gaditana)
ATGAGGTTCCTGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTC
ACGGTGCTATCCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCG
ACAGTAAAAGATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCC
CAGCGAACTATATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACT
TTCTCATCCAGCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTG
GGGACAATGGACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAA
GACCTGTACAACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAG
TCGaatgcctttccctcccaaggCGGAAGACTCCCTGCTTGAACGTTTGG
AAAAAGCGCACATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTG
CTTCATACAAAATCCACCGTGacattcccttcttccagctccCGGGAGGC
GCCTTCGAAGCGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATG
AACACTGGACATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCG
GGCATGGGCCTGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTAT
CACCTGCCACCCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGT
GCATGCCCATGGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTG
GTGAAGAACGAttacctcctccgcttctacCACCCTGTCACCAACCAACA
TTTGCTCCTGGACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCG
CCGCCAATCAACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAA
AGTAGCCCATTCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTct
cgtggagggaggatggggggagggaaggaaagacagggggaggcctgggg
gACCGATGCAGGGAACGTCATGCctgggcgaaggaggggaggaggtgttg
cTCCCTAGGGAAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTT
GGGTCATCTagCCCATGCACCCCGTGGACGGCATTCtgagaggggggcgg
aagggccCCAGGACGGGCACACCCGCTCGTGGGATGCAGGGCGGTCTTGT
CAGCATGAcgagggcgacgaggggggaggcctgAAAtgtaggggaggaga
agtagGATTTCTTCATTACGGACGCACGGCTATCTCTTCCCTGTAGATGA
GGTTCCTGCCTTGTCCCAGCCCCTTGGCAAGTGTTTCTTGGCTTTCACGG
TGCTATCCTCATACTATCCAGCCCGCTTTGATTGGCAATAGCATCGACAG
TAAAAGATGGACATGGAATCTCAAGGTTTTACAATGGAAGTCATCCCAGC
GAACTATATTTCAATACCTGTGGCCGCCTAAATCCGGCCCATCACTTTCT
CATCCAGCAGGAAAGACAGATAGCGGCTCCCAAAATGATGTGGGTGGGGA
CAATGGACAGGACATTTCTAAATCACAAAATCTGTATTCGCATAAAGACC
TGTACAACAAGGACACATTGTGGGGCGCGAAGACAGGCGTCGGGAGTCGa
atgcctttccctcccaaggCGGAAGACTCCCTGCTTGAACGTTTGGAAAA
AGCGCACATGTGCACCGAGCGGCTCCTACAACGGAAGTCCCAACTGCTTC
ATACAAAATCCACCGTGacattcccttcttccagctccCGGGAGGCGCCT
TCGAAGCGACTCGGCTCTTGCCCCGTGCTTGAGGACCTACTGGATGAACA
CTGGACATTCCGCCTCGAACGACGGCCTTCCACTCTACCGGGAGCGGGCA
TGGGCCTGTTCCTAGTCCAGGGGCGGGTGCACGCGGGGGAAGTTATCACC
TGCCACCCTGGGCTTGTCTACCGGATCCCGTACGACCTGGAGGCGTGCAT
GCCCATGGATGAAGTCAGTTTCTCGCCCTGTCCCCCGCCGTTCCTGGTGA
AGAACGAttacctcctccgcttctacCACCCTGTCACCAACCAACATTTG
CTCCTGGACGGTTGTCCTCAGGGCATCTCGGCGTTGAATTTTATCGCCGC
CAATCAACGTCGGGGCCGTCCGTGGGCGAACATGGAGTGGCTGGAAAGTA
GCCCATTCGGCTGCCGGCGCCGCGGGCCTGAACGCGAAGAGGGTctcgtg
gagggaggatggggggagggaaggaaagacagggggaggcctgggggACC
GATGCAGGGAACGTCATGCctgggcgaaggaggggaggaggtgttgcTCC
CTAGGGAAATGGACTCGAGCAAATACTTCACGGCCAAATTGGGGTTGGGT
CATCTagCCCATGCACCCCGTGGACGGCATTCtgagaggggggcggaagg
gccCCAGGACGGGCACACCCGCTCGTGGGATGCAGGGCGGTCTTGTCAGC
ATGAcgagggcgacgaggggggaggcctgAAAtgtaggggaggagaagta
gGATTTCTTCATTACGGACGCACGGCTATCTCTTCCCTGTAG back to top
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