rna8546, rna8546 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8546
Unique Name	rna8546
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	495
Alignment location	KK037249.1:231632..235587 +

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Properties


Property Name	Value
Product	Cyclin-like protein
Orig transcript id	gnl\|cribi\|Naga_100064g21.4112.mrna
Orig protein id	gnl\|cribi\|Naga_100064g21.4112
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:231632..235587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g21	gene8283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8546	rna8546-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22155.1	cds8519	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:231632..235587+
coding sequence from alignment at KK037249.1:231632..235587+

mRNA sequence

>rna8546 ID=rna8546|Name=rna8546|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGGATGAGCTTGCTTTAGAGGCAGCTCCCACGGCGTTAGAGCCAACAAT
TGCCCCAACTGCTCCCACCATCCTGCCCTTTGCGTCACCAAGTACGGATC
CTACCGCCCTTCCTACCGCTGTTCCTACCGCAGCACCTTCAGCTGCCCCG
ACCTCCATGCCCACCTCGTCGCCTACTGCCGCACCTACCACATTACCCAC
TGCAACTGGAGTTCCTACTGCTAATCCGAGCGCTTTCCCTTCCTCTTTGC
CTTCAATGACTCCCACCATCCTGCCCTTTGCGTTACCAAGTGCGGATCCT
ACCGCCCTTCCTACCGCTGTTCCTACCGCAGCACCTTCAGCTGCCCCGAC
CTCCATGCCCACCTCGTCGCCTACTGCCACACCTACGCTACTGCTCACTG
CAATACCTACGACGGCTCCATCAGTTGCTCCAACGTTTGCTCCCACAAGG
GTCCCTACTCCTGCCTTTACGATTGGTCCTCCCCCTCCTTCATAA

protein sequence of rna8546

>rna8546-protein ID=rna8546-protein|Name=rna8546|organism=Nannochloropsis gaditana|type=polypeptide|length=799bp
MVAMERETCPHAPSQGNLEKTVTDIHPRQHIAAYGRYSHQESCQVREGGN
VHGDARFVMSDEDGKSLDCNEELGDALETTLGVENRPPTFSNDRPGIRSE
PQTHPFQHLQRFPPQPQRVSDCIPPPLNMAKVPKFSEHCGRTSVTRITSG
HPPPPPPPPRTAFGRTQSLPSLSKPPPPPPPHLLRQRSYSSLSRPYRSRT
GQFLSQHLDAVDESDPEDVAEMVLNMHIQERDYYAPPWAYFCRLEKDPVL
AYWRRGAFQWFSRVVQHMLGNREIIPMATNFLDRYLAASLYPHLTGPYAA
SHPSPVAPWAPMSGEGLETEGECSPALGVGHGWEGQENFGRVLSAASPSL
GQLDGSDEVPVPAVLADERTFEKVAVCALILALKMQQGDSTMNVARKLTN
LTSACHLSQGALCAMEFRMMGALGRYLNPPTPGTLIHHLLHFLPARRENR
ALFLVLDDHANDLALMALETPELVRFPVSIIAVAAILASFGWVRSCLKGE
GAGAVGGPMESGHHGEEEMSPGMEMEWLQTLDAKDLKIDWEEAHNCLEVL
AREAKKAAALPDRGEGWGGSIYLPQFLALPPALLSQLGGRPTCVPHTPAP
CAEVEPGVQMISPSGVEDIGVVEQASLYPPGAPLAAIPGRRGKRGLGARS
DPGPVQRLGGQPQGGFYHPPVGSGAAFSKGSAGKEPVLPAPHGLPVPCRP
SFHVPHLQHGKHPKQVYAHYFGNHPAPPPPAQAACLVEGRMHAMPPPQNR
LEASVNLQPQSKYQQYQQQQQQQRWLQQQQHWQQQQQHWVQQQQRQQWS

mRNA from alignment at KK037249.1:231632..235587+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8546 ID=rna8546|Name=rna8546|organism=Nannochloropsis gaditana|type=mRNA|length=3956bp|location=Sequence derived from alignment at KK037249.1:231632..235587+ (Nannochloropsis gaditana)
aaatcttccttcttgctACTCTTTGATGATTTTTATTTCACCCTTTGTAT
CCCCGATCCCACTTAATTGGCCTCAGGCGGCGAAGCACTCAGCAAGAGGT
TCTCCCTTTCTATGGAGTACTAGTTTGGATAAATCCAACATTGAGCACTT
TCTGCGAAGGGTGCAAATTACCTCTTAAAGGGTGCACTCAAGCGAAACTA
AATTCGCTCAGTAGGAAGGGCGTGTGCAGAGACATGGTCGCCATGGAGCG
TGAAACTTGTCCTCACGCGCCGTCTCAGGGGAACTTGGAGAAGACCGTCA
CAGATATTCATCCAAGGCAACACATCGCAGCCTACGGTCGTTATTCTCAC
CAGGAGTCTTGCCAGgttcgagaaggagggaatgttCATGGTGATGCGCG
CTTTGTCATGagtgacgaggacgggaaaagCTTGGATTGCAACGAGGAAC
TTGGGGACGCGCTGGAGACAACCTTGGGAGTTGAGGTAAGGTCCAAACTC
GCCCACCATGtcgtttttgtttttttcttgccaAAACTTCACAAAATGAT
TCATACTGCGGGCATTACTTAACTCGTTCCATCTCGCAATTATGTCCTTT
TCGTCGGTGCAGAACCGCCCCCCTACTTTCTCAAACGACCGACCTGGCAT
CCGATCCGAGCCGCAAACTCATCCATTCCAGCACCTACAGCGGTTCCCAC
CTCAGCCCCAGCGCGTCTCTGACTGTATTCCGCCGCCACTGAACATGGCC
AAGGTACCCAAGTTCTCGGAGCACTGTGGCCGGACCAGTGTTACCCGTAT
TACCTCAGgtcatcctccgccccctcccccgccgccccgcACGGCCTTTG
GACGGACACAGAGCCTTCCTAGCCTCTCCaagccaccccctccgccccct
ccccacctgcttCGGCAGCGGTCgtactcctccctctcccggcccTACCG
GTCACGAACGGGCcaattcctctcccagcactTGGACGCAGTGGACGAAT
CCGAcccggaggacgtggcggagatGGTCTTGAACATGCACATCCAGGAA
CGGGACTATTACGCTCCTCCCTGGGCCTATTTCTGCCGCCTGGAGAAGGA
CCCGGTGCTTGCCTACTGGCGGCGCGGCGCGTTCCAATGGTTCTCGCGTG
TCGTCCAACACATGCTGGGGAACCGGGAGATAATCCCAATGGCCACGAAT
TTCCTGGACCGGTATTTGGCGGCGTCGCTGTACCCACACTTGACGGGGCC
GTACGCGGCTTCGCACCCGAGTCCCGTCGCTCCCTGGGCACCGatgtcgg
gggagggcctcgagacggagggcgagTGCTCGCCGGCTCTGGGCGTCGGG
catgggtgggaagggcaggagaacTTCGGCCGCGTCttgtccgccgcctc
ccccagcctGGGACAACTGGATGGAAGCGACGAGGTGCCCGTGCCGGCCG
TCCTGGCGGACGAGCGCACCTTTGAGAAAGTGGCTGTCTGTGCGCTGATC
CTTGCCTTGAAAATGCAACAGGGGGACAGCACGATGAATGTGGCGCGAAA
GTTGACGAATCTGACCAGTGCCTGTCATCTGAGCCAGGGTGCCTTGTGTG
CGATGGAGTTTCGGATGATGGGGGCGCTGGGACGGTACTTGAACCCGCCC
ACACCGGGCACGctcatccaccacctcttgcatttcctccccgcccgaaG
GGAGAACCGGGCCCTCTTTTTGGTTCTGGACGACCACGCCAACGATTTGG
CGCTAATGGCTTTGGAAACACCGGAGCTGGTTCGTTTCCCGGTCTCGATC
ATCGCCGTGGCGGCCATCCTAGCCTCCTTCGGGTGGGTTCGGAGCTGcct
gaaaggggagggggccggggcggtGGGCGGACCGATGGAGAGCGGCCACc
atggggaagaggaaatgagcCCGGGCATGGAGATGGAATGGTTGCAGACG
CTGGACGCAAAGGACCTGAAAATTGACTGGGAGGAAGCCCATAATTGTTT
GGAAGTGCTGGCTCGAGAGGCGAAGAAAGCAGCCGCGCTCCCCGAccggg
gggaaggctggGGGGGTAGCATCTACTTGCCTCAATTCctggccctgccc
cccgcccttctctctcagttggggggaaggccgaCGTGCGTGCCGCACAC
GCCGGCTCCCTGCGCGGAAGTGGAACCAGGGGTGCAAATGATCAGTCCCT
CCGGCGTCGAGGACATAGGAGTCGTCGAGCAGGCATCTCTTTATCCCCCA
GGTGCCCCCCTGGCCGCGATACCTGGTAggcggggaaaaagaggactGGG
GGCACGCTCAGACCCGGGCCCCGTGCAACGTCTGGGTGGACAGCCTCAAG
GGGGCTTCTATCACCCACCAGTGGGCTccggcgccgccttctcGAAGGGA
AGTGCTGGGAAGGAGCCTGTCCTCCCCGCaccccacggcctccccgtGCC
GTGTCGACCCAGCTTCCACGTCCCGCATTTGCAACATGGGAAACATCCCA
AGCAGGTGTATGCGCATTATTTTGGGAACCatccggccccgcccccgccc
gcgcagGCGGCCTGCCTGGTGGAAGGGCGCATGCACGCCATGCCGCCCCC
TCAAAACCGACTGGAGGCGTCTGTGAATTTGCAGCCGCAGAGTAAATACC
AGCAAtaccaacagcagcaacaacagcagcgttggctgcagcagcaacag
cattggcagcaacaacagcagcactgggtgcagcagcaacagcggcaaCA
ATGGTCCTAGGAGCACCCTGACGGGCCACTGCGTGCATTTCGGGTGGGAT
AGGCGAGTGTGCGTGAGAGCTTTGAGCGCTTTCACTTGGAGAAATCCACT
TGTTTTTGTCCGTCCACACTTATTATGTTTTCAACGCAAGGTGATGAGTA
GCGTGCTGCAGCGGCTGACCATTTTCAAGCTTCATGAGAGCTACCGATTT
CTGCAAGAAGAGTTGTAAGAGTCAAAAAACCCAGCAAGCGACCGAAGTCT
GGAGTTGGCGGTCATAGAAGAAATTTTCGAAGGCACTTTTTTAATTTAGG
ATGAAATGTAGGGTTTGAGAGGAGAACTGTTCAAGATAGAATGTAAGAGA
GCACCCATCAGAAAGGAAATGACAACGAAACGAAATCGAAGATGATAGCA
TGTTTTTTAAATCCGAGATAATATGAGAGAATGTACCATGTATGAGTAAT
TGGATGATCAGCACACTTCGAATTTTGCATTTAGGAGGAGACACGGGGGG
GTGAACATGACGTCACCGTGGCGGAATGCGCGGTGCGTCGTGTCGTTCGT
AATACTGACAGAGCATGACAACAAAAGAAGGTCGAATGCTGGCGCGAACG
CAAGCAAGCATGAGGCGTGGAGAGCAGCACACAGGTGTGGTTGTGATAAG
GAGGGAACCCGTAGACGCCTGTCGTAGGAGCCATGCCAGGTAGCACTGGA
TGTCCGAGGAGGCGTGTAGTCTTCCCGTAGTCCACGGAAAGCAGTAGAGG
AGGTCGAAGGGATGGGTAATCCCCTGAGTTTTGGAAGAAGGTCGCAAAGA
CAGCAAGCAATTGCTGTAGCAGATGACGAGATACTATCTTGTGACGTGAA
ATGCATAGGATAATGCTTCACGTGGCGATATTTGGGTATCGGGGGGCGAT
GTGCGTTCGTGGGAAATGAGAATGAACAAACTTGGAATAAGTGTAAGATC
GGTGAGTGAAGTGAGACGCATGTGAGAAATTTTGGCGTTGGATGTAAGGG
GAGATGAGAACATGACCTGGAAGAGAGTatggggaggatgcggcCTGAGA
TTGGATGTGATTATAGTAGTGTCAAAGTGCGTACAAAATCGATGCGGCCT
TACTGCGGCCGAGCACCCACGTCGCAGGGAGGAGTCAAGAGATCGACGTG
ACAGCGGAGGGtaaatgaggaggacgcagtgAAGAATATCGGATGGATCG
ACCCCG

Coding sequence (CDS) from alignment at KK037249.1:231632..235587+

>rna8546 ID=rna8546|Name=rna8546|organism=Nannochloropsis gaditana|type=CDS|length=4800bp|location=Sequence derived from alignment at KK037249.1:231632..235587+ (Nannochloropsis gaditana)
ATGGTCGCCATGGAGCGTGAAACTTGTCCTCACGCGCCGTCTCAGGGGAA
CTTGGAGAAGACCGTCACAGATATTCATCCAAGGCAACACATCGCAGCCT
ACGGTCGTTATTCTCACCAGGAGTCTTGCCAGgttcgagaaggagggaat
gttCATGGTGATGCGCGCTTTGTCATGagtgacgaggacgggaaaagCTT
GGATTGCAACGAGGAACTTGGGGACGCGCTGGAGACAACCTTGGGAGTTG
AGAACCGCCCCCCTACTTTCTCAAACGACCGACCTGGCATCCGATCCGAG
CCGCAAACTCATCCATTCCAGCACCTACAGCGGTTCCCACCTCAGCCCCA
GCGCGTCTCTGACTGTATTCCGCCGCCACTGAACATGGCCAAGGTACCCA
AGTTCTCGGAGCACTGTGGCCGGACCAGTGTTACCCGTATTACCTCAGgt
catcctccgccccctcccccgccgccccgcACGGCCTTTGGACGGACACA
GAGCCTTCCTAGCCTCTCCaagccaccccctccgccccctccccacctgc
ttCGGCAGCGGTCgtactcctccctctcccggcccTACCGGTCACGAACG
GGCcaattcctctcccagcactTGGACGCAGTGGACGAATCCGAcccgga
ggacgtggcggagatGGTCTTGAACATGCACATCCAGGAACGGGACTATT
ACGCTCCTCCCTGGGCCTATTTCTGCCGCCTGGAGAAGGACCCGGTGCTT
GCCTACTGGCGGCGCGGCGCGTTCCAATGGTTCTCGCGTGTCGTCCAACA
CATGCTGGGGAACCGGGAGATAATCCCAATGGCCACGAATTTCCTGGACC
GGTATTTGGCGGCGTCGCTGTACCCACACTTGACGGGGCCGTACGCGGCT
TCGCACCCGAGTCCCGTCGCTCCCTGGGCACCGatgtcgggggagggcct
cgagacggagggcgagTGCTCGCCGGCTCTGGGCGTCGGGcatgggtggg
aagggcaggagaacTTCGGCCGCGTCttgtccgccgcctcccccagcctG
GGACAACTGGATGGAAGCGACGAGGTGCCCGTGCCGGCCGTCCTGGCGGA
CGAGCGCACCTTTGAGAAAGTGGCTGTCTGTGCGCTGATCCTTGCCTTGA
AAATGCAACAGGGGGACAGCACGATGAATGTGGCGCGAAAGTTGACGAAT
CTGACCAGTGCCTGTCATCTGAGCCAGGGTGCCTTGTGTGCGATGGAGTT
TCGGATGATGGGGGCGCTGGGACGGTACTTGAACCCGCCCACACCGGGCA
CGctcatccaccacctcttgcatttcctccccgcccgaaGGGAGAACCGG
GCCCTCTTTTTGGTTCTGGACGACCACGCCAACGATTTGGCGCTAATGGC
TTTGGAAACACCGGAGCTGGTTCGTTTCCCGGTCTCGATCATCGCCGTGG
CGGCCATCCTAGCCTCCTTCGGGTGGGTTCGGAGCTGcctgaaaggggag
ggggccggggcggtGGGCGGACCGATGGAGAGCGGCCACcatggggaaga
ggaaatgagcCCGGGCATGGAGATGGAATGGTTGCAGACGCTGGACGCAA
AGGACCTGAAAATTGACTGGGAGGAAGCCCATAATTGTTTGGAAGTGCTG
GCTCGAGAGGCGAAGAAAGCAGCCGCGCTCCCCGAccggggggaaggctg
gGGGGGTAGCATCTACTTGCCTCAATTCctggccctgccccccgcccttc
tctctcagttggggggaaggccgaCGTGCGTGCCGCACACGCCGGCTCCC
TGCGCGGAAGTGGAACCAGGGGTGCAAATGATCAGTCCCTCCGGCGTCGA
GGACATAGGAGTCGTCGAGCAGGCATCTCTTTATCCCCCAGGTGCCCCCC
TGGCCGCGATACCTGGTAggcggggaaaaagaggactGGGGGCACGCTCA
GACCCGGGCCCCGTGCAACGTCTGGGTGGACAGCCTCAAGGGGGCTTCTA
TCACCCACCAGTGGGCTccggcgccgccttctcGAAGGGAAGTGCTGGGA
AGGAGCCTGTCCTCCCCGCaccccacggcctccccgtGCCGTGTCGACCC
AGCTTCCACGTCCCGCATTTGCAACATGGGAAACATCCCAAGCAGGTGTA
TGCGCATTATTTTGGGAACCatccggccccgcccccgcccgcgcagGCGG
CCTGCCTGGTGGAAGGGCGCATGCACGCCATGCCGCCCCCTCAAAACCGA
CTGGAGGCGTCTGTGAATTTGCAGCCGCAGAGTAAATACCAGCAAtacca
acagcagcaacaacagcagcgttggctgcagcagcaacagcattggcagc
aacaacagcagcactgggtgcagcagcaacagcggcaaCAATGGTCCTAG
ATGGTCGCCATGGAGCGTGAAACTTGTCCTCACGCGCCGTCTCAGGGGAA
CTTGGAGAAGACCGTCACAGATATTCATCCAAGGCAACACATCGCAGCCT
ACGGTCGTTATTCTCACCAGGAGTCTTGCCAGgttcgagaaggagggaat
gttCATGGTGATGCGCGCTTTGTCATGagtgacgaggacgggaaaagCTT
GGATTGCAACGAGGAACTTGGGGACGCGCTGGAGACAACCTTGGGAGTTG
AGAACCGCCCCCCTACTTTCTCAAACGACCGACCTGGCATCCGATCCGAG
CCGCAAACTCATCCATTCCAGCACCTACAGCGGTTCCCACCTCAGCCCCA
GCGCGTCTCTGACTGTATTCCGCCGCCACTGAACATGGCCAAGGTACCCA
AGTTCTCGGAGCACTGTGGCCGGACCAGTGTTACCCGTATTACCTCAGgt
catcctccgccccctcccccgccgccccgcACGGCCTTTGGACGGACACA
GAGCCTTCCTAGCCTCTCCaagccaccccctccgccccctccccacctgc
ttCGGCAGCGGTCgtactcctccctctcccggcccTACCGGTCACGAACG
GGCcaattcctctcccagcactTGGACGCAGTGGACGAATCCGAcccgga
ggacgtggcggagatGGTCTTGAACATGCACATCCAGGAACGGGACTATT
ACGCTCCTCCCTGGGCCTATTTCTGCCGCCTGGAGAAGGACCCGGTGCTT
GCCTACTGGCGGCGCGGCGCGTTCCAATGGTTCTCGCGTGTCGTCCAACA
CATGCTGGGGAACCGGGAGATAATCCCAATGGCCACGAATTTCCTGGACC
GGTATTTGGCGGCGTCGCTGTACCCACACTTGACGGGGCCGTACGCGGCT
TCGCACCCGAGTCCCGTCGCTCCCTGGGCACCGatgtcgggggagggcct
cgagacggagggcgagTGCTCGCCGGCTCTGGGCGTCGGGcatgggtggg
aagggcaggagaacTTCGGCCGCGTCttgtccgccgcctcccccagcctG
GGACAACTGGATGGAAGCGACGAGGTGCCCGTGCCGGCCGTCCTGGCGGA
CGAGCGCACCTTTGAGAAAGTGGCTGTCTGTGCGCTGATCCTTGCCTTGA
AAATGCAACAGGGGGACAGCACGATGAATGTGGCGCGAAAGTTGACGAAT
CTGACCAGTGCCTGTCATCTGAGCCAGGGTGCCTTGTGTGCGATGGAGTT
TCGGATGATGGGGGCGCTGGGACGGTACTTGAACCCGCCCACACCGGGCA
CGctcatccaccacctcttgcatttcctccccgcccgaaGGGAGAACCGG
GCCCTCTTTTTGGTTCTGGACGACCACGCCAACGATTTGGCGCTAATGGC
TTTGGAAACACCGGAGCTGGTTCGTTTCCCGGTCTCGATCATCGCCGTGG
CGGCCATCCTAGCCTCCTTCGGGTGGGTTCGGAGCTGcctgaaaggggag
ggggccggggcggtGGGCGGACCGATGGAGAGCGGCCACcatggggaaga
ggaaatgagcCCGGGCATGGAGATGGAATGGTTGCAGACGCTGGACGCAA
AGGACCTGAAAATTGACTGGGAGGAAGCCCATAATTGTTTGGAAGTGCTG
GCTCGAGAGGCGAAGAAAGCAGCCGCGCTCCCCGAccggggggaaggctg
gGGGGGTAGCATCTACTTGCCTCAATTCctggccctgccccccgcccttc
tctctcagttggggggaaggccgaCGTGCGTGCCGCACACGCCGGCTCCC
TGCGCGGAAGTGGAACCAGGGGTGCAAATGATCAGTCCCTCCGGCGTCGA
GGACATAGGAGTCGTCGAGCAGGCATCTCTTTATCCCCCAGGTGCCCCCC
TGGCCGCGATACCTGGTAggcggggaaaaagaggactGGGGGCACGCTCA
GACCCGGGCCCCGTGCAACGTCTGGGTGGACAGCCTCAAGGGGGCTTCTA
TCACCCACCAGTGGGCTccggcgccgccttctcGAAGGGAAGTGCTGGGA
AGGAGCCTGTCCTCCCCGCaccccacggcctccccgtGCCGTGTCGACCC
AGCTTCCACGTCCCGCATTTGCAACATGGGAAACATCCCAAGCAGGTGTA
TGCGCATTATTTTGGGAACCatccggccccgcccccgcccgcgcagGCGG
CCTGCCTGGTGGAAGGGCGCATGCACGCCATGCCGCCCCCTCAAAACCGA
CTGGAGGCGTCTGTGAATTTGCAGCCGCAGAGTAAATACCAGCAAtacca
acagcagcaacaacagcagcgttggctgcagcagcaacagcattggcagc
aacaacagcagcactgggtgcagcagcaacagcggcaaCAATGGTCCTAG

Synonyms

Publications