rna8539, rna8539 (mRNA) Nannochloropsis gaditana

Overview
Namerna8539
Unique Namerna8539
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1312
Alignment locationKK037249.1:210228..211633 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100064g29.4117.mrna
Orig protein idgnl|cribi|Naga_100064g29.4117
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:210228..211633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100064g29gene8277Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8539rna8539-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22160.1cds8512Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8539 ID=rna8539|Name=rna8539|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
AGACGGAAAGGTCTCCTGTAAAATCGTACGGTTCTCGCCTTTTGCTGTAC
TTGTCTGCACTGCCATATCGAGAGCGAGTTGATAGAACTGACATATTGCA
TGAAGGGAGAACGTTGGGTTTGCCTTTTGATTTGCTGTTTCACAGAGACG
CAACTCCCACGGCGTGGCTTCCATCAAAATATCTTGCTGCTAGTCATAGG
TTGACTGAAATTTCTTGATAAAGTATCGAACAATCTGCCACACTTCTCCA
GCTCTCACTCAGATTGCAGTGTTTGCAACGATTGCGTCTTCACAAGAATG
TTGTGAATCCTTCACGTGTCCACATCTTCCTCCTGTAACCCTTCTGCTAA
TGCGTTCACAACATCATGTTTTCCCCTTTCCTCTTTCCGATTCTCACGCT
CCTCTGATGCCGGTATACCTTCAAAAGCCAAAGTATCATGCCCAGCAGTA
AAAGTGTGCGTTTTGAAGATCTGGACGACGGTGTGGACGACGGTCTGTAT
GGGATGAAGGTATGTCTATTGTCCTCGATCCGTTTTCCCGCCACCCCTTG
TTACCACCAACTGTTACATACGGGACAACAGGGTATCTTGAAAAAATTAT
ACACACAAGCCGGCAGCTATAGGAAGTGGGTTCGCAGCCACAGCAAGAAG
ATCTTATCATGGGGGATCTCCTTGGCCTGGTACTTCAGCATGGCCAGCAT
ACTGACCGTTATACCCCTCTCCCTAGAGCTGCAAAGGGAGCAGTCAGTTG
TGGAAATGGAGAAAATCCAGGTCAAAGAATTACTCGCCCAGGGTTACCCA
CCCCAAGAACTACAACGAATGGGGATGACCTTGGAACCTGCCGTTCTAAA
CGAAAGGCAGCGATAGAGGGCGTGAGTCAAGAGTGGAGCCACCTGTAAAG
TAGCCAAGACGGGGTGCCGGTGGAGCGGGGTGGGGTGGAGAACAAGAGAA
GGTCGAAGTAACATGAAGGTAGGGGATCCAACACCTGAGCATTATCTCCA
GAGATAGAGGACGAAGGATCTATCGGTATGGATGAGTGACCGTGGCTGTA
CATACGTAGAGAGCGGGCGCGTGTTTGGCAGGGGAAGGAGGTAATGCGAT
GGAGAAGGAGCCTGCGGGATACAACATGAGACCTTGGGATCTTGTTCCCG
GGATGCGACCAAAGAAAATGGCAATACAAATGGAGACCTTTTTCAAAGGG
GGCGATGCTTGCCCCACGCATTATGTCGATTAGTCTCCCTGCCGCTCTTG
ACCGGGGGCAGGGGTGGAACCGGGGAATTTTCACCCTCAGTCCAACTCCT
CTTTTGTTTACC
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protein sequence of rna8539

>rna8539-protein ID=rna8539-protein|Name=rna8539|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MSPCVYHRNRQSTKISMKRMLAHVRYPACTHRISCPCTSFSTSSSSPAPG
SEDAYLDEWMRKQIKSFAFYEEEGLQRRYFYTVDLQGRLYLEESPVKNMT
SCLKDDKFLNFFFRQIRRNDTGLHPSYPFVSPCGKEMNYLLPADMPVVFH
DLLPALSGNEKSGDRGDCLVFGGGLQQRFDPSRVHLRRGAGVGNATCSTG
VAFHVKIPWNVL
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mRNA from alignment at KK037249.1:210228..211633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8539 ID=rna8539|Name=rna8539|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp|location=Sequence derived from alignment at KK037249.1:210228..211633- (Nannochloropsis gaditana)
ATGTCTCCGTGCGTATACCATAGAAACAGGCAGTCTACCAAAATTAGTAT
GAAGCGGATGCTGGCACACGTGAGGTACATGATTTCTTGTCGTTTCCTAT
TGTTTGTCTGTGACAAAATTATTTTGGGAAAGTGAGGTAAACTATCCGAT
GCACACAACACCCTGCAGAGGAATTTATCAGAGGACTGTACTGTATTGGT
TTCAACGATATCGATGAGAATGGTTAGTTTTTGGTCCCCTTTCTTGCCTG
GCGTCTTGCTTTAAAGCGCTACGTATCTCCATTTGACCCTGATACACGCC
ACGGCCTTCCGCCGTACCACATATGCCCAGATATCCCGCCTGCACACATC
GTATATCGTGTCCTTGCACGTCATTTTCCACGTCTTCTTCTTCACCAGCG
CCCGGTTCGGAGGACGCCTATCTTGATGAATGGATGCGCAAGCAAATTAA
ATCTTTTGCCTTTTACGAGGAGGAGGGTTTGCAACGACGTTATTTTTACA
CTGTCGATTTGCAGGGGCGGTTATACTTGGAGGAAAGTCCCGTCAAGAAT
ATGACATCTTGTTTGAAGGATGACAAGGTAGGTCGTGGAAAAATGAATTA
GAAATGGGGGGGAAAGAGAGCAACAGAAGGAGGAACAGAGAAAAGCGAAG
AGCTCATAGACTTTATTCAACTACATCTTCTCCATGCATTAGCAATCCAA
CGCTCACTCTTCTCTTCAACGGACTTCATCTTCCAATCCCGCCCATTTCT
CCAGTTCCTCAATTTCTTTTTCCGGCAAATCCGACGGAACGACACGGGCC
TTCATCCCTCCTACCCTTTCGTCTCTCCATGCGGCAAAGAAATGAACTAC
CTTCTCCCCGCCGACATGCCCGTCGTTTTCCACGACCTGCTCCCTGCCCT
GTCAGGCAACGAGAAGTCGGGAGACAGAGGAGATTGTTTGGTCTTCGGGG
GGGGGTTGCAACAACGCTTTGACCCAAGCCGGGTGCACTTGTCGAGGCGC
TCAGGGCGTCTGTATCATCCCGTGGAGGGAGGGAAGCGAGTGCGGGGACA
GCCTGGCTTTGGATTACTGCGTTCACACGTGGCATTCCTTCTGTCAGACG
CGTTGCGGGAGGGCGCGGGCGGGAAACTGGCGTTGGAGTGGGAGGGAGGC
GGGGAGGCAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGA
GTATCCGATCAGGGAGCTCCCAGACGAAGAGGAGCCGGTGTGGGGAATGC
CACCTGCTCGACTGGCGTAGCCTTTCATGTTAAAATCCCATGGAATGTGC
TATAGGGTAAACAAAAGAGGAGTTGGACTGAGGGTGAAAATTCCCCGGTT
CCACCCCTGCCCCCGGTCAAGAGCGGCAGGGAGACTAATCGACATAATGC
GTGGGG
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Coding sequence (CDS) from alignment at KK037249.1:210228..211633-

>rna8539 ID=rna8539|Name=rna8539|organism=Nannochloropsis gaditana|type=CDS|length=2556bp|location=Sequence derived from alignment at KK037249.1:210228..211633- (Nannochloropsis gaditana)
ACGAAGAGGAGCCGGTGTGGGGAATGCCACCTGCTCGACTGGCGTAGCCT
TTCATGTTAAAATCCCATGGAATGTGCTATAGTTCCTCAATTTCTTTTTC
CGGCAAATCCGACGGAACGACACGGGCCTTCATCCCTCCTACCCTTTCGT
CTCTCCATGCGGCAAAGAAATGAACTACCTTCTCCCCGCCGACATGCCCG
TCGTTTTCCACGACCTGCTCCCTGCCCTGTCAGGCAACGAGAAGTCGGGA
GACAGAGGAGATTGTTTGGTCTTCGGGGGGGGGTTGCAACAACGCTTTGA
CCCAAGCCGGGTGCACTTATATCCCGCCTGCACACATCGTATATCGTGTC
CTTGCACGTCATTTTCCACGTCTTCTTCTTCACCAGCGCCCGGTTCGGAG
GACGCCTATCTTGATGAATGGATGCGCAAGCAAATTAAATCTTTTGCCTT
TTACGAGGAGGAGGGTTTGCAACGACGTTATTTTTACACTGTCGATTTGC
AGGGGCGGTTATACTTGGAGGAAAGTCCCGTCAAGAATATGACATCTTGT
TTGAAGGATGACAAGATGTCTCCGTGCGTATACCATAGAAACAGGCAGTC
TACCAAAATTAGTATGAAGCGGATGCTGGCACACGTGAGACGAAGAGGAG
CCGGTGTGGGGAATGCCACCTGCTCGACTGGCGTAGCCTTTCATGTTAAA
ATCCCATGGAATGTGCTATAGTTCCTCAATTTCTTTTTCCGGCAAATCCG
ACGGAACGACACGGGCCTTCATCCCTCCTACCCTTTCGTCTCTCCATGCG
GCAAAGAAATGAACTACCTTCTCCCCGCCGACATGCCCGTCGTTTTCCAC
GACCTGCTCCCTGCCCTGTCAGGCAACGAGAAGTCGGGAGACAGAGGAGA
TTGTTTGGTCTTCGGGGGGGGGTTGCAACAACGCTTTGACCCAAGCCGGG
TGCACTTATATCCCGCCTGCACACATCGTATATCGTGTCCTTGCACGTCA
TTTTCCACGTCTTCTTCTTCACCAGCGCCCGGTTCGGAGGACGCCTATCT
TGATGAATGGATGCGCAAGCAAATTAAATCTTTTGCCTTTTACGAGGAGG
AGGGTTTGCAACGACGTTATTTTTACACTGTCGATTTGCAGGGGCGGTTA
TACTTGGAGGAAAGTCCCGTCAAGAATATGACATCTTGTTTGAAGGATGA
CAAGATGTCTCCGTGCGTATACCATAGAAACAGGCAGTCTACCAAAATTA
GTATGAAGCGGATGCTGGCACACGTGAGACGAAGAGGAGCCGGTGTGGGG
AATGCCACCTGCTCGACTGGCGTAGCCTTTCATGTTAAAATCCCATGGAA
TGTGCTATAGTTCCTCAATTTCTTTTTCCGGCAAATCCGACGGAACGACA
CGGGCCTTCATCCCTCCTACCCTTTCGTCTCTCCATGCGGCAAAGAAATG
AACTACCTTCTCCCCGCCGACATGCCCGTCGTTTTCCACGACCTGCTCCC
TGCCCTGTCAGGCAACGAGAAGTCGGGAGACAGAGGAGATTGTTTGGTCT
TCGGGGGGGGGTTGCAACAACGCTTTGACCCAAGCCGGGTGCACTTATAT
CCCGCCTGCACACATCGTATATCGTGTCCTTGCACGTCATTTTCCACGTC
TTCTTCTTCACCAGCGCCCGGTTCGGAGGACGCCTATCTTGATGAATGGA
TGCGCAAGCAAATTAAATCTTTTGCCTTTTACGAGGAGGAGGGTTTGCAA
CGACGTTATTTTTACACTGTCGATTTGCAGGGGCGGTTATACTTGGAGGA
AAGTCCCGTCAAGAATATGACATCTTGTTTGAAGGATGACAAGATGTCTC
CGTGCGTATACCATAGAAACAGGCAGTCTACCAAAATTAGTATGAAGCGG
ATGCTGGCACACGTGAGACGAAGAGGAGCCGGTGTGGGGAATGCCACCTG
CTCGACTGGCGTAGCCTTTCATGTTAAAATCCCATGGAATGTGCTATAGT
TCCTCAATTTCTTTTTCCGGCAAATCCGACGGAACGACACGGGCCTTCAT
CCCTCCTACCCTTTCGTCTCTCCATGCGGCAAAGAAATGAACTACCTTCT
CCCCGCCGACATGCCCGTCGTTTTCCACGACCTGCTCCCTGCCCTGTCAG
GCAACGAGAAGTCGGGAGACAGAGGAGATTGTTTGGTCTTCGGGGGGGGG
TTGCAACAACGCTTTGACCCAAGCCGGGTGCACTTATATCCCGCCTGCAC
ACATCGTATATCGTGTCCTTGCACGTCATTTTCCACGTCTTCTTCTTCAC
CAGCGCCCGGTTCGGAGGACGCCTATCTTGATGAATGGATGCGCAAGCAA
ATTAAATCTTTTGCCTTTTACGAGGAGGAGGGTTTGCAACGACGTTATTT
TTACACTGTCGATTTGCAGGGGCGGTTATACTTGGAGGAAAGTCCCGTCA
AGAATATGACATCTTGTTTGAAGGATGACAAGATGTCTCCGTGCGTATAC
CATAGAAACAGGCAGTCTACCAAAATTAGTATGAAGCGGATGCTGGCACA
CGTGAG
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Synonyms
Publications