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Properties
| Property Name | Value |
|---|
| Product | light-harvesting protein |
| Orig transcript id | gnl|cribi|Naga_100434g4.2383.mrna |
| Orig protein id | gnl|cribi|Naga_100434g4.2383 |
| Gene | LHCP34 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:191399..193416 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8534 ID=rna8534|Name=rna8534|organism=Nannochloropsis gaditana|type=mRNA|length=1272bp
ATGCACAAAACACGAACGCATACACATGCTCTCGCTCGCCCATCTGCACC
ATTCAAGCCACTAGTTCTTTACTTACACCTGTTGCGACCACACTCGGAGA
CAATGGTATACACGGATGTTCTCGTTGACTGGGCCCATCTTTTGTACCTC
GTGTGTTTCCTGACCGCGGCCAAGGCCGTTGGCTTTTTCATTGTGACAGT
TTATGCATACTTTCCATTCCCTGCCCTCTTGGATCGATTTTACCTGGCGT
CCCAAGGCCTACAATCCTGGTTTTCTTATCAGTTGGGCGGTGCCGCGCCG
GGTTCAGCCGGGAAAGCCAGCCCAAATGGGAATCGAGAACGCTTGCTCGC
AGAATCATTGGTGGAAGGGACCCCATTTATCTTGGAGACGCATACCGCCC
TGACCCGTGACGGCTTTGTGTTAGTACTGCATCGCTTGGTCCCGAAAACG
TCGGGACAGGACGGGCCCGGGGCACCGGGGCAAGCCACGAGCAGCAGTAC
GAGCGAGACCTACGTAGAGGACCGGGGGCCGCAGCGAGCGCGGAGCTGGC
GCAAGGCCTCGGGGGAAAACAACGGCCGAAAATCTGGGGGAGGGAGCCAG
TCCTTGCAACAACACATCCCCACGTCCTCCTTCTTCTCCAAGGGCCCCGG
GTCCGCCGCGGCGCCGGCCGTGGCCCCTGCCTTGCCCTCCGCCGCCGTGC
CGACGGCGACAGGCACGGGGAGCAATGCGGTCACGCCCTCGACTCTTAGA
CGGCCCCCTCTCTTAATGGTGCACGCGCTCATGCAGGATTCCGAGTCCTT
TTTGTGCGGAGGAGAAGAGCATTCCTTGGCCCTGGTTCTGGCCAAGGCCG
GCTTTGACGTGTGGCTGGGCAACAACCGAGGCAACCGGTACAGCCACAAG
CACGTCTCCCTCTCTCCCTCCCAAGACGCGTACTGGAATTTCTCCATCGA
CGAACTCGCGCGCTTCGACGTGCCCGCCATGGTTGACTACGTGCTTCGGG
CCACGGGTCAGGAGAAGCTTGCTTACGTCGGCTTCAGCCAGGGGTCTGCA
CAAGCCTTCGCGGCCTTCACGACCGACCTAGCCATGGCCAAAAAGGTCTC
CATCTTCCTCGCCCTGGCGGCCCCACCCCGGGCGAAAGGATTGTCGTCTT
CCTACTTGTCCGCTTTGGTGGAAAGCAACCCTCGGTTCATTTACTTGGTT
TTCGGTCGCCACTCCATGCTGAGCTCGACCCTAATGTGGATGAAGGTGGG
GGAAGGGCGGGAGGGAGGGAGG back to topprotein sequence of rna8534 >rna8534-protein ID=rna8534-protein|Name=rna8534|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYS
NPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVS
MMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHC
RIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIA
EAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLA
MLAFSGIVTQAALTGHSFPYM back to topmRNA from alignment at KK037249.1:191399..193416+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8534 ID=rna8534|Name=rna8534|organism=Nannochloropsis gaditana|type=mRNA|length=2018bp|location=Sequence derived from alignment at KK037249.1:191399..193416+ (Nannochloropsis gaditana)
CCAACACTGAGCCCTCCATCACTCCATGCCATGCACGTATATCTAATTAA
GACACCTCTGGGAGGTGGGTGGTCGCAGGGGGAGCGGGCGCTTATTTATG
TTTTTTGAATGGAATCAAGCGCGTGGAACGTTATTCGTTCCTTGAGGCGG
ATCCATTTGCTTGTTGCCTATCGCCCGTAccgcttttttcttttttaagA
ACGCTTTGAGCTTTCCATTGGTTTGTACTCCACAACTTGACCATATCATG
TGCGGCATATTATCCATTGATACCAAGTATCTGCGTTGTCTGAATATGTG
TGTATTAGATGTGAATAGTGTCAGTGGCCTTGTAAAGGTAGCCTTCCATG
CTCCAGGATCCCGTCTACCATCGGTACGTGCTTTCCTGATCTATTCTAAT
CCGTTCCTCACCTGCGTCTATAACCTCACACAGATTTGTTCTCTAACTAA
AATTATGAAGCTCTTGTCTTTCGCTTGCCTCATCggcgccgctgccgcct
ttgTGCCCCCCATGCCCGTTACGACTCGTGCCCGCGGCGCTGTCTCCATG
ATGGCTGAGAAGTCCAAATCCATCCCTTTTTtgccccgcccgcctgcgCT
GGACGGCACTGCCCCGGGAGACGTGGGCTTTGACCCGGTCGGGTTCACAA
GCTGGCTGCCCTTGGCGTACTTGCAGGAGGCCGAGATCAAGCACTGCCGC
ATCGCCATGTTGGCAACCCTCGGGTGGATTGTCGCGGATTTTGTCCACCT
CCCTGGTGCGTGACTGTGCCCGCCGATTTTTTGGATATGTAGAGCTGAAG
CAATATGGTCTAGAATGGGGAGGCTACATGTGGAATCGCAGATTGGATGG
AGATGGGGCGTCACGGCGTACGCGACGGAAACCcatgtccctctccttca
agaTGCGTGACTTCCGTTTCCCTTTTGTTGACGGATTTTCCACACCTCTC
GCTATCCCCTAAATCAGGTGATGTCCACGCTGTTagctccctggccgccc
acGACGTGGCTGTAAAGTCGGGCGCCCTCGCCCAAATCCTCATCTGGACC
TCCATCGCGGAAGCGATCTCCGTCGTTGCCATCTCTCAGATGCTCGAGGG
CTCTGGCCGCCAGGTATCTTTTACTTTCCCTCATCATCTCGCATCCGTGT
TCGTATCGGACATGGTCCCCAGTGGACGGGTTCAGCGTCAGCTTTATCTT
TTGTGTCTGTCCGCATGTTCCTGTAGACTTCTTTGTAGACTTCTTTGCAC
CCACTCGTACCCTTTCTTATATTTTTGGCATCATTTCTTCTGTATGAATA
GCCCGGTGACTTCAAGTTCGATCCCCTGGGCTTTGCCAAAGACGAGCAGA
CTCTGAAGAAGCTGCAGCTGAACGAGCTCAAGAATGGACGTTTGGCCATG
GTAAGTCTCGTAGCAAGGCAGTGATTCTTTCGAATGCACGATATTCTGCA
AGGTCTCTTCTCTTGGTGGCACAAAAGTAGGTACTAAATAATATATGACT
TAACGTTGTCTCTTTCACGCACAGCTCGCCTTCTCTGGCATTGTCACCCA
AGCCGCCCTGACCGGCCACTCCTTCCCGTACATGTAAACCTTCTCGATTT
ATCTCTCCGTTCGTCAGAAAGTCAGCGTCgtcattctcctcccacaTTTA
AGCCCGTAGCCGTCGTGGTCGCATACATGTTGAATTCGTGTATGAAAACC
TCTCGCTGGTGCATCTTGATCAACCATTTTGCTTCCAGACATAGACTTTG
TATCTTCTTTGTGAGACTTCGAGAGAATATATTTTAGACAGCGTAAGTGA
CGTGAGAATTGATTGCGCGTGCGTGCGAGGCTGCAAGAGGCAGACAGCAA
GTGTGAAGGAGAGTGGATTGCAGAGAACTAGAGAGGCAGAAGAAAAGAGT
CGCGAGCGAGCATCTAGGTCTAATTTAAATTATGTCTCCGGAATTACAAT
CTCTAAGTTGATCTTCCATTATTTGATTTAAAGTCGTCAAATTGTGGTTC
AAGGCAGAGCGATCGCCC back to topCoding sequence (CDS) from alignment at KK037249.1:191399..193416+ >rna8534 ID=rna8534|Name=rna8534|organism=Nannochloropsis gaditana|type=CDS|length=3264bp|location=Sequence derived from alignment at KK037249.1:191399..193416+ (Nannochloropsis gaditana)
ATGTGCGGCATATTATCCATTGATACCAAGTATCTGCGTTGTCTGAATAT
GTGTGTATTAGATGTGAATAGTGTCAGTGGCCTTGTAAAGGTAGCCTTCC
ATGCTCCAGGATCCCGTCTACCATCGGTACGTGCTTTCCTGATCTATTCT
AATCCGTTCCTCACCTGCGTCTATAACCTCACACAGATTTGTTCTCTAAC
TAAAATTATGAAGCTCTTGTCTTTCGCTTGCCTCATCggcgccgctgccg
cctttgTGCCCCCCATGCCCGTTACGACTCGTGCCCGCGGCGCTGTCTCC
ATGATGGCTGAGAAGTCCAAATCCATCCCTTTTTtgccccgcccgcctgc
gCTGGACGGCACTGCCCCGGGAGACGTGGGCTTTGACCCGGTCGGGTTCA
CAAGCTGGCTGCCCTTGGCGTACTTGCAGGAGGCCGAGATCAAGCACTGC
CGCATCGCCATGTTGGCAACCCTCGGGTGGATTGTCGCGGATTTTGTCCA
CCTCCCTGGTGATGTCCACGCTGTTagctccctggccgcccacGACGTGG
CTGTAAAGTCGGGCGCCCTCGCCCAAATCCTCATCTGGACCTCCATCGCG
GAAGCGATCTCCGTCGTTGCCATCTCTCAGATGCTCGAGGGCTCTGGCCG
CCAGCCCGGTGACTTCAAGTTCGATCCCCTGGGCTTTGCCAAAGACGAGC
AGACTCTGAAGAAGCTGCAGCTGAACGAGCTCAAGAATGGACGTTTGGCC
ATGCTCGCCTTCTCTGGCATTGTCACCCAAGCCGCCCTGACCGGCCACTC
CTTCCCGTACATGTAAATGTGCGGCATATTATCCATTGATACCAAGTATC
TGCGTTGTCTGAATATGTGTGTATTAGATGTGAATAGTGTCAGTGGCCTT
GTAAAGGTAGCCTTCCATGCTCCAGGATCCCGTCTACCATCGGTACGTGC
TTTCCTGATCTATTCTAATCCGTTCCTCACCTGCGTCTATAACCTCACAC
AGATTTGTTCTCTAACTAAAATTATGAAGCTCTTGTCTTTCGCTTGCCTC
ATCggcgccgctgccgcctttgTGCCCCCCATGCCCGTTACGACTCGTGC
CCGCGGCGCTGTCTCCATGATGGCTGAGAAGTCCAAATCCATCCCTTTTT
tgccccgcccgcctgcgCTGGACGGCACTGCCCCGGGAGACGTGGGCTTT
GACCCGGTCGGGTTCACAAGCTGGCTGCCCTTGGCGTACTTGCAGGAGGC
CGAGATCAAGCACTGCCGCATCGCCATGTTGGCAACCCTCGGGTGGATTG
TCGCGGATTTTGTCCACCTCCCTGGTGATGTCCACGCTGTTagctccctg
gccgcccacGACGTGGCTGTAAAGTCGGGCGCCCTCGCCCAAATCCTCAT
CTGGACCTCCATCGCGGAAGCGATCTCCGTCGTTGCCATCTCTCAGATGC
TCGAGGGCTCTGGCCGCCAGCCCGGTGACTTCAAGTTCGATCCCCTGGGC
TTTGCCAAAGACGAGCAGACTCTGAAGAAGCTGCAGCTGAACGAGCTCAA
GAATGGACGTTTGGCCATGCTCGCCTTCTCTGGCATTGTCACCCAAGCCG
CCCTGACCGGCCACTCCTTCCCGTACATGTAAATGTGCGGCATATTATCC
ATTGATACCAAGTATCTGCGTTGTCTGAATATGTGTGTATTAGATGTGAA
TAGTGTCAGTGGCCTTGTAAAGGTAGCCTTCCATGCTCCAGGATCCCGTC
TACCATCGGTACGTGCTTTCCTGATCTATTCTAATCCGTTCCTCACCTGC
GTCTATAACCTCACACAGATTTGTTCTCTAACTAAAATTATGAAGCTCTT
GTCTTTCGCTTGCCTCATCggcgccgctgccgcctttgTGCCCCCCATGC
CCGTTACGACTCGTGCCCGCGGCGCTGTCTCCATGATGGCTGAGAAGTCC
AAATCCATCCCTTTTTtgccccgcccgcctgcgCTGGACGGCACTGCCCC
GGGAGACGTGGGCTTTGACCCGGTCGGGTTCACAAGCTGGCTGCCCTTGG
CGTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATCGCCATGTTGGCA
ACCCTCGGGTGGATTGTCGCGGATTTTGTCCACCTCCCTGGTGATGTCCA
CGCTGTTagctccctggccgcccacGACGTGGCTGTAAAGTCGGGCGCCC
TCGCCCAAATCCTCATCTGGACCTCCATCGCGGAAGCGATCTCCGTCGTT
GCCATCTCTCAGATGCTCGAGGGCTCTGGCCGCCAGCCCGGTGACTTCAA
GTTCGATCCCCTGGGCTTTGCCAAAGACGAGCAGACTCTGAAGAAGCTGC
AGCTGAACGAGCTCAAGAATGGACGTTTGGCCATGCTCGCCTTCTCTGGC
ATTGTCACCCAAGCCGCCCTGACCGGCCACTCCTTCCCGTACATGTAAAT
GTGCGGCATATTATCCATTGATACCAAGTATCTGCGTTGTCTGAATATGT
GTGTATTAGATGTGAATAGTGTCAGTGGCCTTGTAAAGGTAGCCTTCCAT
GCTCCAGGATCCCGTCTACCATCGGTACGTGCTTTCCTGATCTATTCTAA
TCCGTTCCTCACCTGCGTCTATAACCTCACACAGATTTGTTCTCTAACTA
AAATTATGAAGCTCTTGTCTTTCGCTTGCCTCATCggcgccgctgccgcc
tttgTGCCCCCCATGCCCGTTACGACTCGTGCCCGCGGCGCTGTCTCCAT
GATGGCTGAGAAGTCCAAATCCATCCCTTTTTtgccccgcccgcctgcgC
TGGACGGCACTGCCCCGGGAGACGTGGGCTTTGACCCGGTCGGGTTCACA
AGCTGGCTGCCCTTGGCGTACTTGCAGGAGGCCGAGATCAAGCACTGCCG
CATCGCCATGTTGGCAACCCTCGGGTGGATTGTCGCGGATTTTGTCCACC
TCCCTGGTGATGTCCACGCTGTTagctccctggccgcccacGACGTGGCT
GTAAAGTCGGGCGCCCTCGCCCAAATCCTCATCTGGACCTCCATCGCGGA
AGCGATCTCCGTCGTTGCCATCTCTCAGATGCTCGAGGGCTCTGGCCGCC
AGCCCGGTGACTTCAAGTTCGATCCCCTGGGCTTTGCCAAAGACGAGCAG
ACTCTGAAGAAGCTGCAGCTGAACGAGCTCAAGAATGGACGTTTGGCCAT
GCTCGCCTTCTCTGGCATTGTCACCCAAGCCGCCCTGACCGGCCACTCCT
TCCCGTACATGTAA back to top
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