EWM22167.1, cds8507 (CDS) Nannochloropsis gaditana

Overview
NameEWM22167.1
Unique Namecds8507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:191646..192153 +
Alignment locationKK037249.1:192366..192511 +
Alignment locationKK037249.1:192700..192798 +
Alignment locationKK037249.1:192923..192985 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22167.1
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100434g4.2383.mrna
GeneLHCP34
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:191646..192153 +
KK037249.1supercontigKK037249.1:192366..192511 +
KK037249.1supercontigKK037249.1:192700..192798 +
KK037249.1supercontigKK037249.1:192923..192985 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR023329Chlorophyll_a/b-bd_dom
IPR022796Chloroa_b-bind
Homology
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|585102590|gb|EWM22167.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
            MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM
Sbjct:    1 MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|553180803|ref|XP_005853464.1| (light-harvesting protein [Nannochloropsis gaditana CCMP526] >gi|422295597|gb|EKU22896.1| light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 412.149 bits (1058), Expect = 1.782e-144
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:   70 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
            MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM
Sbjct:    1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|873228632|emb|CEM15583.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 217.238 bits (552), Expect = 5.409e-67
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 0
Query:  104 EKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDE--QTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
            E SKSIPF+PRP  LDGT   D GFDP GF++WL L + +EAEIKH R+ MLAT+G+I A++  LPG+VH VSSL AH+ AV+ GA++QIL+W S AE  S +A+ QM +GSGRQPG+F FDPLGF K++  + +K +Q  E+KNGRLAMLA SGI+TQAALT   FPY 
Sbjct:   67 EMSKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEYFKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPYF 236          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|298710576|emb|CBJ32007.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 205.682 bits (522), Expect = 7.086e-63
Identity = 108/206 (52.43%), Postives = 143/206 (69.42%), Query Frame = 0
Query:   74 SFAC---LIGAAAAFVPP--MPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270
            + AC   ++ +A+AFVPP  +P    +   +SM A KSKS+PF+P+P  LDGT  GD GFDP+GF++++PL +L+EAE+KH RI  LA +G+   D    LPG  HAV+S+AAHD AV +GA+ QIL+W S  EAIS VA+ QMLEGSGR PGDF FDP   +++ E   KK  ++L E+ + RLAM AF G+VTQA LT   FPY
Sbjct:    4 TLACSLAVLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|922860591|gb|KOO28459.1| (protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 199.904 bits (507), Expect = 2.928e-60
Identity = 95/168 (56.55%), Postives = 123/168 (73.21%), Query Frame = 0
Query:  106 SKSIPFLPRPPALD--GTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
            S+++PFL R  +L   G   GDVGFDPVG+T   P+ +L+EAEIKH R+AMLA LG++  DF HLPG     ++L AHD  V SGA++Q+L+W  + E IS ++I QML GSGR+PGDF FDP+GF  D   LK+LQ+ EL NGRLAM AF G+VTQ+ LTG+SFPY+
Sbjct:   46 SQALPFLVRRASLGPVGKYVGDVGFDPVGWTEIFPIEWLREAEIKHSRVAMLAFLGFVFTDFYHLPG--FDYTTLEAHDATVASGAMSQLLLWIGLLEVISTISIDQMLRGSGREPGDFGFDPIGFGSDPVKLKELQMKELANGRLAMFAFGGVVTQSVLTGNSFPYL 211          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|676391259|ref|XP_009038907.1| (putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens] >gi|323450447|gb|EGB06328.1| putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens])

HSP 1 Score: 192.2 bits (487), Expect = 9.460e-58
Identity = 99/190 (52.11%), Postives = 134/190 (70.53%), Query Frame = 0
Query:   83 AAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVAD--FVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270
            +A V P+  TT    +++ M EKS S+PFL   P L G   G+ GFDP+G + W+P+ +L+E+E+KH R+ MLATLG++  D  FV LPG++H VSS+ AHDVAV  G++ QI I+ +I E I  +AI +ML+GSGR+PGDF FDPL     +    ++QL E++NGRLAMLAF+GIVTQA LTG  FPY
Sbjct:   16 SALVAPVSQTT----SLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFV-LPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGGGDD--PEMQLREIENGRLAMLAFAGIVTQAVLTGKGFPY 198          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|545711394|ref|XP_005708003.1| (light-harvesting complex protein [Galdieria sulphuraria] >gi|452824481|gb|EME31483.1| light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 190.274 bits (482), Expect = 1.542e-56
Identity = 93/185 (50.27%), Postives = 131/185 (70.81%), Query Frame = 0
Query:   81 AAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVS-SLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264
            ++ +FVP    + RA  +   + +KSK+IPFL RPPALDG+  GDVGFDP+  +S+L L +L+E+EIKHCRIAMLA +GW V +  HLP ++++ S    A    + +G + QI++WTS+ E IS  A+ QML+GSGR+PG F FDPLG  K+ +  K+ QL+ELKNGRLAM+A  G++ Q+ LT
Sbjct:   33 SSRSFVPRNLCSLRASAS---LPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESEIKHCRIAMLAVVGWFVQEVYHLPNEIYSSSVPTEAFWKTLVTGPMGQIVLWTSLFEMISTPAVIQMLQGSGREPGYFGFDPLGLGKNPELYKRFQLSELKNGRLAMIAIGGLIHQSFLT 214          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|10636363|emb|CAC10535.1| (light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 187.963 bits (476), Expect = 8.594e-56
Identity = 89/168 (52.98%), Postives = 121/168 (72.02%), Query Frame = 0
Query:   98 AVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSS-LAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264
            A + + +KSK+IPFL RPPALDG+  GDVGFDP+  +S+L L +L+E+E+KHCRIAMLA +GW V +  HLP  +++ S    A    + +G + QI++WTS  E IS  A+ QML+GSGR+PG F FDPLG  K+ Q  K+ QL+ELKNGRLAM+A  G++ Q+ LT
Sbjct:   38 ASASLPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNQIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|19849861|emb|CAC87422.1| (light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 187.193 bits (474), Expect = 1.577e-55
Identity = 89/168 (52.98%), Postives = 121/168 (72.02%), Query Frame = 0
Query:   98 AVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSS-LAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264
            A + + +KSK+IPFL RPPALDG+  GDVGFDP+  +S+L L +L+E+E+KHCRIAMLA +GW V +  HLP  +++ S    A    + +G + QI++WTS  E IS  A+ QML+GSGR+PG F FDPLG  K+ Q  K+ QL+ELKNGRLAM+A  G++ Q+ LT
Sbjct:   38 ASASLPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205          
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|551586941|ref|XP_005778485.1| (light harvesting protein [Emiliania huxleyi CCMP1516] >gi|485630875|gb|EOD26056.1| light harvesting protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 186.422 bits (472), Expect = 4.374e-55
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 0
Query:  124 GDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
            GDVGFDP+GFT  LPLA+L+EAEIKHCR AMLAT G+   DF H PG     ++L AHD  +  G ++Q+L+W  + E  S ++I QML GSGR+PGD+ FDPLGFA D      LQ+ EL NGRLAM AF G VTQ+ LTG++FPY+
Sbjct:   67 GDVGFDPLGFTEILPLAWLREAEIKHCRTAMLATFGFAFTDFWHFPG--FDYTTLEAHDAVIAQGGMSQLLLWIGLLEVFSAISIDQMLRGSGREPGDYGFDPLGFASDPAKKADLQMKELANGRLAMFAFGGFVTQSVLTGNTFPYL 212          
The following BLAST results are available for this feature:
BLAST of EWM22167.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102590|gb|EWM22167.1|0.000e+0100.00light-harvesting protein [Nannochloropsis gaditana... [more]
gi|553180803|ref|XP_005853464.1|1.782e-144100.00light-harvesting protein [Nannochloropsis gaditana... [more]
gi|873228632|emb|CEM15583.1|5.409e-6760.59unnamed protein product [Vitrella brassicaformis C... [more]
gi|298710576|emb|CBJ32007.1|7.086e-6352.43Light harvesting complex protein [Ectocarpus silic... [more]
gi|922860591|gb|KOO28459.1|2.928e-6056.55protein fucoxanthin chlorophyll a c protein [Chrys... [more]
gi|676391259|ref|XP_009038907.1|9.460e-5852.11putative plastid light harvesting protein isoform ... [more]
gi|545711394|ref|XP_005708003.1|1.542e-5650.27light-harvesting complex protein [Galdieria sulphu... [more]
gi|10636363|emb|CAC10535.1|8.594e-5652.98light-harvesting protein [Galdieria sulphuraria][more]
gi|19849861|emb|CAC87422.1|1.577e-5552.98light-harvesting protein [Galdieria sulphuraria][more]
gi|551586941|ref|XP_005778485.1|4.374e-5557.43light harvesting protein [Emiliania huxleyi CCMP15... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8534rna8534Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications