EWM22167.1, cds8507 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|585102590|gb|EWM22167.1| (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 Query: 1 MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271 MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM Sbjct: 1 MCGILSIDTKYLRCLNMCVLDVNSVSGLVKVAFHAPGSRLPSVRAFLIYSNPFLTCVYNLTQICSLTKIMKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|553180803|ref|XP_005853464.1| (light-harvesting protein [Nannochloropsis gaditana CCMP526] >gi|422295597|gb|EKU22896.1| light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 412.149 bits (1058), Expect = 1.782e-144 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 Query: 70 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM Sbjct: 1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|873228632|emb|CEM15583.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 217.238 bits (552), Expect = 5.409e-67 Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 0 Query: 104 EKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDE--QTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271 E SKSIPF+PRP LDGT D GFDP GF++WL L + +EAEIKH R+ MLAT+G+I A++ LPG+VH VSSL AH+ AV+ GA++QIL+W S AE S +A+ QM +GSGRQPG+F FDPLGF K++ + +K +Q E+KNGRLAMLA SGI+TQAALT FPY Sbjct: 67 EMSKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEYFKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPYF 236
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|298710576|emb|CBJ32007.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 205.682 bits (522), Expect = 7.086e-63 Identity = 108/206 (52.43%), Postives = 143/206 (69.42%), Query Frame = 0 Query: 74 SFAC---LIGAAAAFVPP--MPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270 + AC ++ +A+AFVPP +P + +SM A KSKS+PF+P+P LDGT GD GFDP+GF++++PL +L+EAE+KH RI LA +G+ D LPG HAV+S+AAHD AV +GA+ QIL+W S EAIS VA+ QMLEGSGR PGDF FDP +++ E KK ++L E+ + RLAM AF G+VTQA LT FPY Sbjct: 4 TLACSLAVLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|922860591|gb|KOO28459.1| (protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 199.904 bits (507), Expect = 2.928e-60 Identity = 95/168 (56.55%), Postives = 123/168 (73.21%), Query Frame = 0 Query: 106 SKSIPFLPRPPALD--GTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271 S+++PFL R +L G GDVGFDPVG+T P+ +L+EAEIKH R+AMLA LG++ DF HLPG ++L AHD V SGA++Q+L+W + E IS ++I QML GSGR+PGDF FDP+GF D LK+LQ+ EL NGRLAM AF G+VTQ+ LTG+SFPY+ Sbjct: 46 SQALPFLVRRASLGPVGKYVGDVGFDPVGWTEIFPIEWLREAEIKHSRVAMLAFLGFVFTDFYHLPG--FDYTTLEAHDATVASGAMSQLLLWIGLLEVISTISIDQMLRGSGREPGDFGFDPIGFGSDPVKLKELQMKELANGRLAMFAFGGVVTQSVLTGNSFPYL 211
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|676391259|ref|XP_009038907.1| (putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens] >gi|323450447|gb|EGB06328.1| putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens]) HSP 1 Score: 192.2 bits (487), Expect = 9.460e-58 Identity = 99/190 (52.11%), Postives = 134/190 (70.53%), Query Frame = 0 Query: 83 AAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVAD--FVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270 +A V P+ TT +++ M EKS S+PFL P L G G+ GFDP+G + W+P+ +L+E+E+KH R+ MLATLG++ D FV LPG++H VSS+ AHDVAV G++ QI I+ +I E I +AI +ML+GSGR+PGDF FDPL + ++QL E++NGRLAMLAF+GIVTQA LTG FPY Sbjct: 16 SALVAPVSQTT----SLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFV-LPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGGGDD--PEMQLREIENGRLAMLAFAGIVTQAVLTGKGFPY 198
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|545711394|ref|XP_005708003.1| (light-harvesting complex protein [Galdieria sulphuraria] >gi|452824481|gb|EME31483.1| light-harvesting complex protein [Galdieria sulphuraria]) HSP 1 Score: 190.274 bits (482), Expect = 1.542e-56 Identity = 93/185 (50.27%), Postives = 131/185 (70.81%), Query Frame = 0 Query: 81 AAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVS-SLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264 ++ +FVP + RA + + +KSK+IPFL RPPALDG+ GDVGFDP+ +S+L L +L+E+EIKHCRIAMLA +GW V + HLP ++++ S A + +G + QI++WTS+ E IS A+ QML+GSGR+PG F FDPLG K+ + K+ QL+ELKNGRLAM+A G++ Q+ LT Sbjct: 33 SSRSFVPRNLCSLRASAS---LPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESEIKHCRIAMLAVVGWFVQEVYHLPNEIYSSSVPTEAFWKTLVTGPMGQIVLWTSLFEMISTPAVIQMLQGSGREPGYFGFDPLGLGKNPELYKRFQLSELKNGRLAMIAIGGLIHQSFLT 214
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|10636363|emb|CAC10535.1| (light-harvesting protein [Galdieria sulphuraria]) HSP 1 Score: 187.963 bits (476), Expect = 8.594e-56 Identity = 89/168 (52.98%), Postives = 121/168 (72.02%), Query Frame = 0 Query: 98 AVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSS-LAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264 A + + +KSK+IPFL RPPALDG+ GDVGFDP+ +S+L L +L+E+E+KHCRIAMLA +GW V + HLP +++ S A + +G + QI++WTS E IS A+ QML+GSGR+PG F FDPLG K+ Q K+ QL+ELKNGRLAM+A G++ Q+ LT Sbjct: 38 ASASLPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNQIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|19849861|emb|CAC87422.1| (light-harvesting protein [Galdieria sulphuraria]) HSP 1 Score: 187.193 bits (474), Expect = 1.577e-55 Identity = 89/168 (52.98%), Postives = 121/168 (72.02%), Query Frame = 0 Query: 98 AVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSS-LAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALT 264 A + + +KSK+IPFL RPPALDG+ GDVGFDP+ +S+L L +L+E+E+KHCRIAMLA +GW V + HLP +++ S A + +G + QI++WTS E IS A+ QML+GSGR+PG F FDPLG K+ Q K+ QL+ELKNGRLAM+A G++ Q+ LT Sbjct: 38 ASASLPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205
BLAST of EWM22167.1 vs. NCBI_GenBank
Match: gi|551586941|ref|XP_005778485.1| (light harvesting protein [Emiliania huxleyi CCMP1516] >gi|485630875|gb|EOD26056.1| light harvesting protein [Emiliania huxleyi CCMP1516]) HSP 1 Score: 186.422 bits (472), Expect = 4.374e-55 Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 0 Query: 124 GDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271 GDVGFDP+GFT LPLA+L+EAEIKHCR AMLAT G+ DF H PG ++L AHD + G ++Q+L+W + E S ++I QML GSGR+PGD+ FDPLGFA D LQ+ EL NGRLAM AF G VTQ+ LTG++FPY+ Sbjct: 67 GDVGFDPLGFTEILPLAWLREAEIKHCRTAMLATFGFAFTDFWHFPG--FDYTTLEAHDAVIAQGGMSQLLLWIGLLEVFSAISIDQMLRGSGREPGDYGFDPLGFASDPAKKADLQMKELANGRLAMFAFGGFVTQSVLTGNTFPYL 212 The following BLAST results are available for this feature:
BLAST of EWM22167.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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