rna852, rna852 (mRNA) Nannochloropsis gaditana

Overview
Namerna852
Unique Namerna852
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2396
Alignment locationCM002456.1:572606..573377 -

Link to JBrowse

Properties
Property NameValue
ProductDNA methylase, N-6 adenine-specific, eukaryotic
Orig transcript idgnl|cribi|Naga_100017g43.295.mrna
Orig protein idgnl|cribi|Naga_100017g43.295
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:572606..573377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g43gene816Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna852rna852-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29797.1cds852Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna852 ID=rna852|Name=rna852|organism=Nannochloropsis gaditana|type=mRNA|length=2396bp
CCTTGTCCCCACAAACAGGCAGGCCCCCTTCTCCTTGTTCCGTCGTCAAC
CTGGTGGATTCCGTTCTTAGCTCCGGACATAAGAAGTTCCACCTCACCGG
GTGGGCTCCCTCCAACTGCCCTTCAACCCCCTCAATCCTCGTATACCCGC
CCTTCACATTGGCCAAAGGATCATGATGCCTCCGCCCCCATCATCTGCAA
GCACGTCGCGTTCTGTTGTGTTGTCCCTGTACCGAGCGTGCTTGCGATGG
ACTCAAATTCCTCTGGTGGTAAAAAGCAAATTTATCGCGGGCGACCACCT
CCCCTCTACTCTCGCTGCCCTTCAGCTTTCCCCTCGTCTCCTGACAAATA
AGGAGGGTATTGAAGAAGCCATTCGCATGCTATTTCGAGCACACGCCAAA
GAAATGGATGCCAAGGTGGTCTCGGAAAAAATGAATCTTGCTGTTGACGG
GTTGCAGTATCTGAATCGGTTTACTCGCGTGTTGAGAGACGCGGAGTCCC
GACGGGAGGCGAATCGGGCCCGGGACGGCCTGACCTTTCGAGTAGGGCAG
GTTGTGAGGCATAAACTGTACAACTACAGGGCCGCAATTGTTGGGTGGGA
CCGGCGCCCTGCCATTGACGTGAGCCGGTGGGAAGGCGTGCTCGCCTCGT
CCCTGGGCGTGAACCAACCCTTCTACCACTGCATCCCTGACAGCAACGAC
ACCTTGCATTTCCTTGGCGGCGTCCGGAAGCTCATGTACGTGGCGCAGGA
AAACCTGGAACTCTGCCACGCTTTGGAAAGCCGAATTAACTCGGACGTCA
TTCCTCAGGCCTTCGAATGCTTCGACCCTAGCACCCAATCCTTCCTACCA
ACAGAGCGCATCACATGGCAGTACCCGGCAGATCACTTGGTCCCCCGTGC
CTCCCCCACCTCTCCCTCTAGCACCTTCAAGCCACGCACCTCAGGATTCA
GCAGGAAGTTCCGGGCCTCGGTGCAGCGGGCCAAGGCCGTAGACGCCTCC
CAGCGTGTACGGGCGGAGTTCGCTCAGCTGGCAGACCGCATTGGGCAATC
GCTCGAAAGCCGGTTCGGCAATCTGGAGCGCTTTCATGCCCATGAGCCTG
CGGGGATCCTCCTATCTTTGCTCGCTCGATTGAAAGAGATAGACGCCTCC
TTTCCCCCCTCTGTTCCCTCTCTCTCCCTCCCATCCACGGCCACTGCCAG
CCCCTGCAGCAGCCTCGAGCAGATACTCCCTGCCTATCACACTCTGGCCG
CGTTCCGAGACCTCCTCGCCCTCTGCCAAGACGTGAGCAGCGCCCGTCGG
TTCGCGAGAGACCGGGACGGTGTTCTCTACCAAGTCGGGCAGGCGGTGCG
GCACGCAACGCTTGGCTACCGCGGTGTTGTCTGTGGGTGGGAGCGGTTTC
CCAAACGGCAGCTCCCGTCCGATCAGCCGGACCTGTCGGCAGGACACCCG
CACTACCGGGTCATTGTCAACGACGAGGACCGGCGCTCTTCCCCCCCCCT
CCGGCGTTGGTGGTTTTGCCCCAAAATACGCTGGCGGCAACGCCCGCGGA
GGAAAGTGCGGTGATCAGCCCTCTCATTCCCGAGAACTTCCTTTACTACG
ATCCTGTGGCCGCGCGTTACCGGCCAAACGGGACGCTGGAGTTCAAGTAT
TCCATCGGGAGATCGCGTGAGGGTGAAAAGGACTACGGAGGGGGAGATGA
GGAGGCAAGCATGGTGGAGGTCGTCCATCGCGTGCTGACCCAAGTCCTGG
TGCAGGCACGGAGCAAAGGGCCCCGGCGGGCGGGTATGAAGGCAGATCTA
TTCATGCTCTTGCAGGGGGCCATGCGGAAAGAGGACGCTGACGTGGCTGA
GTCCACTCTTTGGTCCCTGTGGTTGGCCCACACCGACGCTGACGTCAGCG
CCTTTATGGACGATGGCATCCAATTCATGCTGCGAGGCAAGTATGACTTG
GCGATAACCCGCTTCGATGCCGCCCTGGCCTTGGATCCCGGTTTTTCAGA
GGCATACAACAAACGGAGCACTGCCAACTTCCTATCCGGCAGGTATGAGG
AGGCTAAGAAAGATGCAGTCGTAACATTAAACCAGGAGCCCTCGCACTGG
GGCGCGCTTTTAGGGCGAGGATTGATCGACTACGAGATAGGACAGAAGCT
TCAAGCAATCAAAGCCTTTCGCGCCACACTCAGGATCCACCCCTGGAGCA
CTAATGTGGGCACTACGCTTTTTCACACGCGCAAGCAGCTGGAGACGGAG
GAAGTGATGACGATGATGGAGCCTCTGTGATGAGGGTTCGCGGATGACAA
GAAATCAAAACTCGTGTGAAAAGATAGGTCTAGAACAAGAACTGTAATTA
TACGAGATTACGGAAACAGACAAAAAATCATTTGCCGTTCGTATAC
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protein sequence of rna852

>rna852-protein ID=rna852-protein|Name=rna852|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MSELGHIPVVEIEPGDGNDEASKDFLFRNPENTMMNQYWYSPATIAVFVA
EVEEQASHTSGNIAFLSTPSIYFSISPAVRKRSRLLDFDLKWSKDPGYIM
YDFNHPGALPEELRSQSSMVVLDPPFITEEVWGMYSRAVRWLLKTTKDGE
EERTGLEGRILCTTVSENADRLNRLLGVKKRHFQPSIPSLTYQFSTFSNY
ESPRLDQVNPELL
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mRNA from alignment at CM002456.1:572606..573377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna852 ID=rna852|Name=rna852|organism=Nannochloropsis gaditana|type=mRNA|length=772bp|location=Sequence derived from alignment at CM002456.1:572606..573377- (Nannochloropsis gaditana)
ATGTCAGAGCTTGGGCACATTCCTGTTGTTGAGATTGAACCTGGAGATGG
GAATGATGAGGCCAGCAAGGATTTTCTTTTCCGAAACCCGGAGGTAAGAG
TAAAAAAAACAACCCGCTCGTCCTTTTTATTCCTGTCGGACAAAAGATTG
CCGATAATAATGCGTGCATAGTGAAACTTACATCATTAAGATTGACCCTC
TTGCCTGTGATCATTCCCTGCAGAATACAATGATGAATCAGTATTGGTAT
TCCCCTGCAACAATTGCTGTTTTCGTCGCGGAAGTCGAAGAACAAGCCTC
ACACACAAGCGGTAACATCGCATTCCTCAGTACACCAAGCATTTATTTTA
GCATTTCACCTGCTGTAAGAAAAAGATCTCGATTGCTTGACTTCGATTTG
AAATGGAGCAAAGACCCGGGATATATAATGTACGACTTCAACCACCCTGG
GGCACTACCGGAAGAGCTTAGAAGCCAGTCCTCTATGGTCGTGCTTGATC
CACCATTTATCACAGAGGAAGTCTGGGGAATGTATAGTAGAGCTGTGCGC
TGGTTACTGAAGACCACCAAGGATGGCGAGGAGGAAAGGACGGGGTTAGA
AGGGAGGATCCTTTGCACTACTGTGAGCGAGAATGCAGACAGGCTGAATA
GGCTTTTAGGCGTTAAAAAGCGGCATTTTCAGCCATCCATCCCCTCATTA
ACTTATCAATTCTCTACCTTCAGCAATTACGAGTCGCCTCGGCTTGATCA
GGTAAATCCGGAGCTGCTCTAG
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Coding sequence (CDS) from alignment at CM002456.1:572606..573377-

>rna852 ID=rna852|Name=rna852|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at CM002456.1:572606..573377- (Nannochloropsis gaditana)
AATACAATGATGAATCAGTATTGGTATTCCCCTGCAACAATTGCTGTTTT
CGTCGCGGAAGTCGAAGAACAAGCCTCACACACAAGCGGTAACATCGCAT
TCCTCAGTACACCAAGCATTTATTTTAGCATTTCACCTGCTGTAAGAAAA
AGATCTCGATTGCTTGACTTCGATTTGAAATGGAGCAAAGACCCGGGATA
TATAATGTACGACTTCAACCACCCTGGGGCACTACCGGAAGAGCTTAGAA
GCCAGTCCTCTATGGTCGTGCTTGATCCACCATTTATCACAGAGGAAGTC
TGGGGAATGTATAGTAGAGCTGTGCGCTGGTTACTGAAGACCACCAAGGA
TGGCGAGGAGGAAAGGACGGGGTTAGAAGGGAGGATCCTTTGCACTACTG
TGAGCGAGAATGCAGACAGGCTGAATAGGCTTTTAGGCGTTAAAAAGCGG
CATTTTCAGCCATCCATCCCCTCATTAACTTATCAATTCTCTACCTTCAG
CAATTACGAGTCGCCTCGGCTTGATCAGGTAAATCCGGAGCTGCTCTAGA
TGTCAGAGCTTGGGCACATTCCTGTTGTTGAGATTGAACCTGGAGATGGG
AATGATGAGGCCAGCAAGGATTTTCTTTTCCGAAACCCGGAGAATACAAT
GATGAATCAGTATTGGTATTCCCCTGCAACAATTGCTGTTTTCGTCGCGG
AAGTCGAAGAACAAGCCTCACACACAAGCGGTAACATCGCATTCCTCAGT
ACACCAAGCATTTATTTTAGCATTTCACCTGCTGTAAGAAAAAGATCTCG
ATTGCTTGACTTCGATTTGAAATGGAGCAAAGACCCGGGATATATAATGT
ACGACTTCAACCACCCTGGGGCACTACCGGAAGAGCTTAGAAGCCAGTCC
TCTATGGTCGTGCTTGATCCACCATTTATCACAGAGGAAGTCTGGGGAAT
GTATAGTAGAGCTGTGCGCTGGTTACTGAAGACCACCAAGGATGGCGAGG
AGGAAAGGACGGGGTTAGAAGGGAGGATCCTTTGCACTACTGTGAGCGAG
AATGCAGACAGGCTGAATAGGCTTTTAGGCGTTAAAAAGCGGCATTTTCA
GCCATCCATCCCCTCATTAACTTATCAATTCTCTACCTTCAGCAATTACG
AGTCGCCTCGGCTTGATCAGGTAAATCCGGAGCTGCTCTAGATGTCAGAG
CTTGGGCACATTCCTGTTGTTGAGATTGAACCTGGAGATGGGAATGATGA
GGCCAGCAAGGATTTTCTTTTCCGAAACCCGGAG
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Synonyms
Publications