rna8518, rna8518 (mRNA) Nannochloropsis gaditana

Overview
Namerna8518
Unique Namerna8518
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length675
Alignment locationKK037249.1:146414..147381 +

Link to JBrowse

Properties
Property NameValue
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_101574g1.6003.mrna
Orig protein idgnl|cribi|Naga_101574g1.6003
GeneNUOF
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:146414..147381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NUOFgene8256Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8518rna8518-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22182.1cds8491Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8518 ID=rna8518|Name=rna8518|organism=Nannochloropsis gaditana|type=mRNA|length=675bp
GGACACGATTTCCCTTCCTTATGAAAGACTCGACCTGCGGTAACGCGCGC
GAATAGGTTGACAGGCATGTAGAAAAGGTGGTGGAGGGGTGCGTCGTGCT
TGGTAACGCGTAAAGGCGTGGATTTGACGACCGTAATGCCAGCCTTGGCG
GAATGAGGGTACCTGACCATGATGATTGTCTGTCTGCCGTCCACCTTCTT
GTGCCAAAAATAGGAGCCACCCAGGCCTTTATGCCCCACCCGTAGAAGTA
TTCTGCAGACACTGATGGTAATTCCTTATCACTTGTAAAGTTGCATTGTT
TCGCCCCCACAAAAGTGTTCGCAATGAGTGCTCCAGCGGCCACAGATGAC
GCGAAGTCCACCCCCCCTGCGTCTGCGGGCGCCGCGACAACTGCCACTAC
TCATGACGGGCCAGCGGGAGCGTATGAAGATCCGGAATTACTCCACAAAC
TTGCAGACACGGTGCGGCGGACAATGAAAATCCGAAACGGAGTCCTTCAA
GAGACTCGTGTGGATTACTTCAAAGGCACGAAACTAATCAAATACCTGAC
CACGGACTCGCTGAGCAAAGCAGACGGGAAACTTCCCAGTGTAGCCTCGG
AGGAGCAGGCCATCGCCATCGGCAACCTGCTGCTGCGAGCCAAGGGGTAG
GGAAGGAGGGAGGGAGGGAGGGAGG
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protein sequence of rna8518

>rna8518-protein ID=rna8518-protein|Name=rna8518|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MLRSSGSKLKTAFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRI
FTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGA
GFPSGLKWSFMPKKSGATGVPLSWS
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mRNA from alignment at KK037249.1:146414..147381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8518 ID=rna8518|Name=rna8518|organism=Nannochloropsis gaditana|type=mRNA|length=968bp|location=Sequence derived from alignment at KK037249.1:146414..147381+ (Nannochloropsis gaditana)
ATGCTGCGTTCCAGCGGCAGTAAGCTCAAGACAGCTTTCGGCCGCTTGGC
GGGCGATATCCTTCGACGTGGCGCGGGTAAGTTGTGTAAATTTGCTCCCT
GGCCGTGCATCCCAGGCTCCTACAGAGACCCCTCATtccacgtcccccct
ccatcatgTTTCACTCAACTGCCCGCGTCGGGGCTTGAGCATGCGCGGAT
TCGAAAGCGGTACAGAACCCTCTGACGCTGGTTTTGAATCCGCAAGCGTC
GTGGTTAGAATTCAGCCGTGTGGCCTCATTTCACCTCTTTCCTACAGCAT
cggctgccccccctcccgcagcGCCAGCCATGACTAAGGTCTATGGAGGC
CTCAAGGACCAAGATCGCATCTTCACAAATCTGTACGGCGAGTACGATTG
GCGCATTGACGGGGCGATGAAGCGTGGGGATTGGCACATGACCAAGGAAA
TCATGTGGCAAGgtaagggggggaggaaggagagaagggaaggaaggggg
aaaagcatGGTTGTACGAAACGGGATGTGTATGCATTCTTTTTCACAGTG
GCACAAGATGCTCATAAGGATACGTGTTTCTTGTCTCTGACCTTTTGCCT
ATCCgcatcgccttctctcctccttcctccctcctttcctccctctttcc
ttctttccctccccccctccctcccgcccgtcctttTCCCATCATCCCCA
TTCTCCCGCCTGTAGGCCCGGACTGGatcgtggaggagatgaagaagtCA
GGGCTccgaggacggggtggcgctggctttccttccggCCTCAAGTGGTC
CTTCATGCCGAAAAAAAGTgggtccctcccctccctccctccctccctcc
ctccctccctcccttcctccctccctttctccctccctttccaccatcgt
ccatcctcatcacacctccctccttttgaCGTGGCAGAGCGACGGgcgtc
cctctttcctggtCGTGA
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Coding sequence (CDS) from alignment at KK037249.1:146414..147381+

>rna8518 ID=rna8518|Name=rna8518|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at KK037249.1:146414..147381+ (Nannochloropsis gaditana)
ATGCTGCGTTCCAGCGGCAGTAAGCTCAAGACAGCTTTCGGCCGCTTGGC
GGGCGATATCCTTCGACGTGGCGCGGCATcggctgccccccctcccgcag
cGCCAGCCATGACTAAGGTCTATGGAGGCCTCAAGGACCAAGATCGCATC
TTCACAAATCTGTACGGCGAGTACGATTGGCGCATTGACGGGGCGATGAA
GCGTGGGGATTGGCACATGACCAAGGAAATCATGTGGCAAGGCCCGGACT
GGatcgtggaggagatgaagaagtCAGGGCTccgaggacggggtggcgct
ggctttccttccggCCTCAAGTGGTCCTTCATGCCGAAAAAAAGTggAGC
GACGGgcgtccctctttcctggtCGTGAATGCTGCGTTCCAGCGGCAGTA
AGCTCAAGACAGCTTTCGGCCGCTTGGCGGGCGATATCCTTCGACGTGGC
GCGGCATcggctgccccccctcccgcagcGCCAGCCATGACTAAGGTCTA
TGGAGGCCTCAAGGACCAAGATCGCATCTTCACAAATCTGTACGGCGAGT
ACGATTGGCGCATTGACGGGGCGATGAAGCGTGGGGATTGGCACATGACC
AAGGAAATCATGTGGCAAGGCCCGGACTGGatcgtggaggagatgaagaa
gtCAGGGCTccgaggacggggtggcgctggctttccttccggCCTCAAGT
GGTCCTTCATGCCGAAAAAAAGTggAGCGACGGgcgtccctctttcctgg
tCGTGAATGCTGCGTTCCAGCGGCAGTAAGCTCAAGACAGCTTTCGGCCG
CTTGGCGGGCGATATCCTTCGACGTGGCGCGGCATcggctgccccccctc
ccgcagcGCCAGCCATGACTAAGGTCTATGGAGGCCTCAAGGACCAAGAT
CGCATCTTCACAAATCTGTACGGCGAGTACGATTGGCGCATTGACGGGGC
GATGAAGCGTGGGGATTGGCACATGACCAAGGAAATCATGTGGCAAGGCC
CGGACTGGatcgtggaggagatgaagaagtCAGGGCTccgaggacggggt
ggcgctggctttccttccggCCTCAAGTGGTCCTTCATGCCGAAAAAAAG
TggAGCGACGGgcgtccctctttcctggtCGTGAATGCTGCGTTCCAGCG
GCAGTAAGCTCAAGACAGCTTTCGGCCGCTTGGCGGGCGATATCCTTCGA
CGTGGCGCGGCATcggctgccccccctcccgcagcGCCAGCCATGACTAA
GGTCTATGGAGGCCTCAAGGACCAAGATCGCATCTTCACAAATCTGTACG
GCGAGTACGATTGGCGCATTGACGGGGCGATGAAGCGTGGGGATTGGCAC
ATGACCAAGGAAATCATGTGGCAAGGCCCGGACTGGatcgtggaggagat
gaagaagtCAGGGCTccgaggacggggtggcgctggctttccttccggCC
TCAAGTGGTCCTTCATGCCGAAAAAAAGTggAGCGACGGgcgtccctctt
tcctggtCGTGA
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Synonyms
Publications