EWM22182.1, cds8491 (CDS) Nannochloropsis gaditana

Overview
NameEWM22182.1
Unique Namecds8491
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:146414..146489 +
Alignment locationKK037249.1:146711..146875 +
Alignment locationKK037249.1:147129..147234 +
Alignment locationKK037249.1:147351..147381 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22182.1
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_101574g1.6003.mrna
GeneNUOF
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:146414..146489 +
KK037249.1supercontigKK037249.1:146711..146875 +
KK037249.1supercontigKK037249.1:147129..147234 +
KK037249.1supercontigKK037249.1:147351..147381 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR011538Nuo51_FMN-bd
Homology
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|585102613|gb|EWM22182.1| (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 251.521 bits (641), Expect = 1.204e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MLRSSGSKLKTAFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKSGATGVPLSWS 125
            MLRSSGSKLKTAFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKSGATGVPLSWS
Sbjct:    1 MLRSSGSKLKTAFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKSGATGVPLSWS 125          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|298711911|emb|CBJ48598.1| (NUOF homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus])

HSP 1 Score: 150.984 bits (380), Expect = 6.893e-41
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 0
Query:   12 AFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
              GR A  + R  +A+      AP   +VYGGLKDQDRIFTNLYGE DWR+  A+KRGDWH TKEIMW GPDWIV+EMK SGLRGRGGAGFPSGLKWSFMPK +
Sbjct:   22 VVGRSAAVLGRSLSAAPGAKEEAPEPPRVYGGLKDQDRIFTNLYGEQDWRVGDALKRGDWHQTKEIMWMGPDWIVQEMKDSGLRGRGGAGFPSGLKWSFMPKNT 125          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|1214703825|gb|OWZ15775.1| (NADH dehydrogenase flavoprotein 1 [Phytophthora megakarya])

HSP 1 Score: 146.747 bits (369), Expect = 2.481e-39
Identity = 64/93 (68.82%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   23 RGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            R +A+ A     PAM +VYGGLKD+DRIFTN+YGE  WR+DGA++RGDWH TK+++  GPDWIV+E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   19 RSSAAVANAVQEPAMARVYGGLKDEDRIFTNVYGEDTWRVDGALRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 111          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|301111442|ref|XP_002904800.1| (NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4] >gi|262095130|gb|EEY53182.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 146.362 bits (368), Expect = 3.177e-39
Identity = 64/93 (68.82%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   23 RGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            R +A+ A     PAM +VYGGLKD+DRIFTN+YGE  WR+DGA++RGDWH TK+++  GPDWIV+E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   19 RTSAAVANAAEEPAMARVYGGLKDEDRIFTNVYGEDTWRVDGAVRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 111          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|1173960825|gb|OQS06914.1| (NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 145.206 bits (365), Expect = 7.784e-39
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 0
Query:   29 APPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            A     PAMT++YGGLKD+DRIFTNLYGE  WRI+GA+KRGDW+ TK++++ GPDWIV+E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   24 ANAEETPAMTRIYGGLKDEDRIFTNLYGEQTWRIEGALKRGDWYRTKDLLYMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 110          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|698809434|ref|XP_009837746.1| (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Aphanomyces astaci] >gi|574107447|gb|ETV72960.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 145.206 bits (365), Expect = 9.636e-39
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 0
Query:    1 MLRSSGSKLKTAFGRLAGDILRRGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            + R+   KLK+         +       APP     +T+VYGGLKD+DRIFTNLYGE  WR+DGA++RGDWH TK+++  GP+WI++E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:    7 LTRAVAQKLKSQVRLFQSSAVLNNVQGEAPP-----LTRVYGGLKDEDRIFTNLYGEQTWRVDGALRRGDWHRTKDLLCMGPEWIIQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 116          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|566008922|gb|ETI31833.1| (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica P1569] >gi|567946408|gb|ETK72219.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica] >gi|567975100|gb|ETL25669.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica] >gi|568034480|gb|ETM32149.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica] >gi|570312601|gb|ETO60549.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica P1976] >gi|570936366|gb|ETP01623.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 144.05 bits (362), Expect = 2.277e-38
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   23 RGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            R +A+ A     PAM +VYGGLKD+DRIFTN+YGE  WR+DGA++RGDW+ TK+++  GPDWIV+E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   20 RTSAAVANAAEEPAMARVYGGLKDEDRIFTNVYGEDTWRVDGALRRGDWYRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 112          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|669151874|ref|XP_008611499.1| (NADH dehydrogenase (ubiquinone) flavoprotein 1 [Saprolegnia diclina VS20] >gi|530736973|gb|EQC35215.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Saprolegnia diclina VS20])

HSP 1 Score: 144.05 bits (362), Expect = 2.314e-38
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0
Query:   34 APAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
             PAMT+VYGGLKD+DRIFTNLYGE  WRIDGA+KRGDW+ TK+ +  GP+WI++EMK SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   35 TPAMTRVYGGLKDEDRIFTNLYGEQTWRIDGALKRGDWYRTKDFLNMGPEWIIQEMKDSGLRGRGGAGFPSGLKWSFMPKQT 116          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|675212031|ref|XP_008914900.1| (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|568004556|gb|ETL78876.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica] >gi|568084889|gb|ETM99809.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|570966684|gb|ETP29803.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Phytophthora parasitica P10297] >gi|970656736|gb|KUF94713.1| Tartrate-resistant acid phosphatase type 5 [Phytophthora nicotianae])

HSP 1 Score: 144.05 bits (362), Expect = 2.399e-38
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   23 RGAASAAPPPAAPAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            R +A+ A     PAM +VYGGLKD+DRIFTN+YGE  WR+DGA++RGDW+ TK+++  GPDWIV+E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   20 RTSAAVANAAEEPAMARVYGGLKDEDRIFTNVYGEDTWRVDGALRRGDWYRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKQT 112          
BLAST of EWM22182.1 vs. NCBI_GenBank
Match: gi|325187212|emb|CCA21752.1| (ubiquinone oxidoreductase putative [Albugo laibachii Nc14])

HSP 1 Score: 144.05 bits (362), Expect = 2.798e-38
Identity = 62/81 (76.54%), Postives = 75/81 (92.59%), Query Frame = 0
Query:   35 PAMTKVYGGLKDQDRIFTNLYGEYDWRIDGAMKRGDWHMTKEIMWQGPDWIVEEMKKSGLRGRGGAGFPSGLKWSFMPKKS 115
            PAMT+VYGGLKD+DRIFTNLYGE  WRIDGA+KRGDW+ TK+++  GP+WI++E+K SGLRGRGGAGFPSGLKWSFMPK++
Sbjct:   36 PAMTRVYGGLKDEDRIFTNLYGEKTWRIDGALKRGDWYRTKDLLCMGPEWIIQEVKDSGLRGRGGAGFPSGLKWSFMPKQT 116          
The following BLAST results are available for this feature:
BLAST of EWM22182.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102613|gb|EWM22182.1|1.204e-84100.00nadh dehydrogenase [Nannochloropsis gaditana][more]
gi|298711911|emb|CBJ48598.1|6.893e-4169.23NUOF homolog, NADH dehydrogenase (ubiquinone) subu... [more]
gi|1214703825|gb|OWZ15775.1|2.481e-3968.82NADH dehydrogenase flavoprotein 1 [Phytophthora me... [more]
gi|301111442|ref|XP_002904800.1|3.177e-3968.82NADH dehydrogenase flavoprotein 1, mitochondrial p... [more]
gi|1173960825|gb|OQS06914.1|7.784e-3972.41NADH dehydrogenase flavoprotein 1, mitochondrial p... [more]
gi|698809434|ref|XP_009837746.1|9.636e-3956.52NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
gi|566008922|gb|ETI31833.1|2.277e-3867.74NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
gi|669151874|ref|XP_008611499.1|2.314e-3876.83NADH dehydrogenase (ubiquinone) flavoprotein 1 [Sa... [more]
gi|675212031|ref|XP_008914900.1|2.399e-3867.74NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
gi|325187212|emb|CCA21752.1|2.798e-3876.54ubiquinone oxidoreductase putative [Albugo laibach... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8518rna8518Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications